LINC00470 Gene
RNA gene GIFtS: 31
GCID: GC18M001268
|
|
long intergenic non-protein coding RNA 470(Previous name: chromosome 18 open reading frame 2 )
(Previous symbol: C18orf2)
| |
Aliases
for LINC00470 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 3
| Aliases |
|---|
| Long Intergenic Non-Protein Coding RNA 4701 2 | | C18orf21 2 3 | | Chromosome 18 Open Reading Frame 21 |
| External Ids: | HGNC: 12251 | Entrez Gene: 566512 | Ensembl: ENSG000001322047 | UniProtKB: Q9BZP33 | | ORGUL members: | |
|---|
| NONCODE:n383254 | |
Export aliases for LINC00470 gene to outside databases
|---|
Summaries
for LINC00470 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for LINC00470 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000018.9 NC_018929.1 NT_010859.14
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for LINC00470
Other transcription factors
Search SABiosciences Chromatin IP Primers for LINC00470
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LINC00470 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Ensembl cytogenetic band: 18p11.32 HGNC cytogenetic band: 18p11.32LINC00470 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18M001268: view genomic region
(about GC identifiers)
Start:
|
1,254,384 bp from pter |
End:
|
1,408,345 bp from pter |
Size:
|
153,962 bases |
Orientation:
|
minus strand |
|
Proteins
for LINC00470 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CR002_HUMAN, Q9BZP3 (See
protein sequence)Recommended Name: Putative uncharacterized protein encoded by LINC00470 Size: 86 amino acids; 9646 Da
Caution: Product of a dubious CDS prediction. May be a non-coding RNA
Secondary accessions: Q9BZP2 Q9BZP4Alternative splicing: 3 isoforms: Q9BZP3-1 Q9BZP3-2 Q9BZP3-3 Explore the universe of human proteins at neXtProt for LINC00470: NX_Q9BZP3
LINC00470 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005575 | cellular_component |
ND | -- |
LINC00470 for ontologies About GeneDecksing
LINC00470 Antibody Products:
Assay Products for LINC00470: |
Protein
Domains /
Families
for LINC00470 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q9BZP3 |
Function
for LINC00470 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LINC00470 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- |
LINC00470 for ontologies About GeneDecksing
|
Pathways & Interactions
for LINC00470 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LINC00470
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- |
LINC00470 for ontologies About GeneDecksing
|
Drugs & Compounds
for LINC00470 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for LINC00470
Search CenterWatch for drugs/clinical trials and news about LINC00470 
|
Transcripts
for LINC00470 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for LINC00470 gene: NM_031416.2 Unigene Cluster for LINC00470: Long intergenic non-protein coding RNA 470 Hs.541165 [show with all ESTs]Unigene Representative Sequence: NR_02392513 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000584090(lincRNA)(uc002klb.1) ENST00000412816(lincRNA)(uc002klg.2 uc002klc.1 uc010dki.1 uc002kld.1)
ENST00000577867(lincRNA) ENST00000584492(lincRNA)(uc002kle.1) ENST00000578835(lincRNA)(uc002klf.1)
ENST00000581430(lincRNA) ENST00000582862(lincRNA) ENST00000577403(lincRNA) ENST00000581212(lincRNA) ENST00000582570(lincRNA)
ENST00000580336(lincRNA) ENST00000334697(lincRNA) ENST00000269201(lincRNA)
Additional cDNA sequence: AF295729.1 AK057505.1 NR_023925.1 NR_023926.1 NR_023927.1 2 DOTS entries: DT.430115 DT.75177691 24/39 AceView cDNA sequences (see all 39): CA422689 AF295726 CF528954 NM_031416 AF295728 BX112668 T82070 AF295730 AF295727 BU732870 AK057505 AF295729 AI221255 BU633738 BQ012749 AA019670 AF295725 AV685708 T78248 T71647 AV686058 AV689746 AA021221 AV693105
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for LINC00470 About this scheme
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b |
|---|
|
| SP1: | | | - | | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for LINC00470
|
Expression
for LINC00470 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for LINC00470:none
LINC00470 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGTGTCTGGG
About this image
Genevestigator expression for LINC00470
SOURCE GeneReport for Unigene cluster: Hs.541165
UniProtKB/Swiss-Prot: CR002_HUMAN, Q9BZP3Tissue specificity: Retina-specific
SABiosciences Custom PCR Arrays for LINC00470
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat LINC00470 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LINC00470 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LINC00470 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LINC00470 |
Orthologs
for LINC00470 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for LINC00470 (if available)
TreeFam Gene Tree for LINC00470 (if available) |
Paralogs
for LINC00470 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for LINC00470 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 18 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for LINC00470 (1254384 - 1408345 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for LINC00470: -- | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for LINC00470 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for LINC00470 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for LINC00470 gene integrated from 9 sources:
(articles sorted by number of sources associating them with LINC00470) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- EST mining of the UniGene dataset to identify retina-specific genes. (PubMed id 11173868)1, 2, 3 Stohr H....Weber B.H. (2000)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
|
External Searches for LINC00470 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing LINC00470 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing LINC00470 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing LINC00470 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for LINC00470 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for LINC00470 gene:
Search GeneIP for patents involving LINC00470
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for LINC00470 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat LINC00470 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LINC00470 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LINC00470 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LINC00470 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LINC00470 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LINC00470 |
| |
 |  |  |  | |
| | | |  |  |  |  | | | | |
 |
 |
 |
 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LINC00470 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat LINC00470 |
|
|
|
|
GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
View Random Gene
|
Category
|
|
|
von Willebrand factor
|
| GIFtS Group |
|
Developed at the Crown Human Genome Center,
Department of Molecular Genetics,
the Weizmann Institute of Science
Copyright © 1996-2013
, Weizmann Institute of Science. All Rights Reserved.
hostname: 356980-web2.xennexinc.com
index build: 100 solr: 1.4
|
