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Aliases for LINC00460 Gene

Subcategory (RNA class) for LINC00460 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00460 Gene

  • Long Intergenic Non-Protein Coding RNA 460 2 3 5

External Ids for LINC00460 Gene

Previous GeneCards Identifiers for LINC00460 Gene

  • GC13P107030

Summaries for LINC00460 Gene

GeneCards Summary for LINC00460 Gene

LINC00460 (Long Intergenic Non-Protein Coding RNA 460) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00460 Gene

Genomics for LINC00460 Gene

Regulatory Elements for LINC00460 Gene

Enhancers for LINC00460 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G106372 1.5 FANTOM5 Ensembl ENCODE 0.7 -3.0 -3004 2.6 PKNOX1 TBL1XR1 NFIB FEZF1 GATA2 SCRT2 HSF1 FOS RELB IKZF2 LINC00460 GC13M106362
GH13G106375 0.8 ENCODE 0.7 +0.1 129 1.5 CTCF JUN FEZF1 ZIC2 RAD21 HIC1 ZFHX2 GLIS2 GATA2 ZNF366 LINC00460 RPL35P9
GH13G106378 0.6 ENCODE 0.7 +2.6 2617 1.1 HIC1 PRDM6 JUND ZNF629 FOS ZEB2 EP300 LINC00460 RPL35P9
GH13G106380 0.4 ENCODE 0.7 +4.7 4694 0.9 ZNF10 LINC00460 RPL35P9
GH13G106423 0.6 ENCODE 0.2 +47.1 47065 0.2 SMARCA4 NR2F1 IKZF1 RELB HNF4A EBF1 RPL35P9 LINC00460
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00460 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00460 Gene

Chromosome:
13
Start:
106,376,563 bp from pter
End:
106,378,217 bp from pter
Size:
1,655 bases
Orientation:
Plus strand

Genomic View for LINC00460 Gene

Genes around LINC00460 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00460 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00460 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00460 Gene

Proteins for LINC00460 Gene

Post-translational modifications for LINC00460 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00460 Gene

Domains & Families for LINC00460 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00460 Gene

Function for LINC00460 Gene

Phenotypes for LINC00460 Gene

GenomeRNAi human phenotypes for LINC00460:
genes like me logo Genes that share phenotypes with LINC00460: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00460 Gene

Localization for LINC00460 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00460 Gene

Pathways & Interactions for LINC00460 Gene

SuperPathways for LINC00460 Gene

No Data Available

Interacting Proteins for LINC00460 Gene

Gene Ontology (GO) - Biological Process for LINC00460 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00460 Gene

Drugs & Compounds for LINC00460 Gene

No Compound Related Data Available

Transcripts for LINC00460 Gene

mRNA/cDNA for LINC00460 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00460 Gene

Long intergenic non-protein coding RNA 460:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00460 Gene

No ASD Table

Relevant External Links for LINC00460 Gene

GeneLoc Exon Structure for
LINC00460
ECgene alternative splicing isoforms for
LINC00460

Expression for LINC00460 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00460 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00460 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x9.1), Brain - Nucleus accumbens (basal ganglia) (x8.5), Brain - Putamen (basal ganglia) (x8.4), Brain - Amygdala (x6.5), Brain - Anterior cingulate cortex (BA24) (x5.1), and Brain - Frontal Cortex (BA9) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00460 Gene:

LINC00460

SOURCE GeneReport for Unigene cluster for LINC00460 Gene:

Hs.559194
genes like me logo Genes that share expression patterns with LINC00460: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00460 Gene

Orthologs for LINC00460 Gene

Evolution for LINC00460 Gene

ENSEMBL:
Gene Tree for LINC00460 (if available)
TreeFam:
Gene Tree for LINC00460 (if available)

No data available for Orthologs for LINC00460 Gene

Paralogs for LINC00460 Gene

No data available for Paralogs for LINC00460 Gene

Variants for LINC00460 Gene

Sequence variations from dbSNP and Humsavar for LINC00460 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000346534 -- 106,377,810(+) TGATA(C/T)TTGAT downstream-variant-500B
rs1001043351 -- 106,377,486(+) CACAG(C/T)GAGAA nc-transcript-variant
rs1001982275 -- 106,374,695(+) GATTA(C/T)AGGCT upstream-variant-2KB
rs1003566428 -- 106,375,769(+) CTCCT(C/G)ACCTC upstream-variant-2KB
rs1003659827 -- 106,375,613(+) CGGCT(C/G)ACTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC00460 Gene

Variant ID Type Subtype PubMed ID
esv3633458 CNV gain 21293372
nsv1039628 CNV gain 25217958

Relevant External Links for LINC00460 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00460

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00460 Gene

Disorders for LINC00460 Gene

Relevant External Links for LINC00460

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00460

No disorders were found for LINC00460 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00460 Gene

Publications for LINC00460 Gene

  1. Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer. (PMID: 27591862) Wang R. … Wang C. (J. Cancer Res. Clin. Oncol. 2016) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00460 Gene

Sources for LINC00460 Gene

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