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Aliases for LINC00336 Gene

Subcategory (RNA class) for LINC00336 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00336 Gene

  • Long Intergenic Non-Protein Coding RNA 336 2 3
  • NCRNA00336 3 4
  • C6orf227 3 4
  • Chromosome 6 Open Reading Frame 227 2
  • Non-Protein Coding RNA 336 2

External Ids for LINC00336 Gene

ORGUL Members for LINC00336 Gene

Previous HGNC Symbols for LINC00336 Gene

  • C6orf227
  • NCRNA00336

Previous GeneCards Identifiers for LINC00336 Gene

  • GC06M033554

Summaries for LINC00336 Gene

GeneCards Summary for LINC00336 Gene

LINC00336 (Long Intergenic Non-Protein Coding RNA 336) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00336 Gene

Genomics for LINC00336 Gene

Genomic Location for LINC00336 Gene

Start:
33,586,106 bp from pter
End:
33,593,338 bp from pter
Size:
7,233 bases
Orientation:
Minus strand

Genomic View for LINC00336 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00336 Gene

No data available for Regulatory Elements for LINC00336 Gene

Proteins for LINC00336 Gene

  • Protein details for LINC00336 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUF6-NC336_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00336
    Protein Accession:
    Q6ZUF6
    Secondary Accessions:

    Protein attributes for LINC00336 Gene

    Size:
    198 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00336 Gene

Proteomics data for LINC00336 Gene at MOPED

Post-translational modifications for LINC00336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00336 Gene

Domains for LINC00336 Gene

Gene Families for LINC00336 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00336 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00336: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00336 Gene

Function for LINC00336 Gene

Animal Model Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00336
    • Block miRNA regulation of LINC00336 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00336

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00336 Gene

    Localization for LINC00336 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00336 Gene

    Pathways for LINC00336 Gene

    SuperPathways for LINC00336 Gene

    No Data Available

    Interacting Proteins for LINC00336 Gene

    Gene Ontology (GO) - Biological Process for LINC00336 Gene

    None

    No data available for Pathways by source for LINC00336 Gene

    Transcripts for LINC00336 Gene

    mRNA/cDNA for LINC00336 Gene

    (2) Selected AceView cDNA sequences:
    (1) REFSEQ mRNAs :
    (2) Additional mRNA sequences :
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for LINC00336 Gene

    Long intergenic non-protein coding RNA 336:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00336
      • Block miRNA regulation of LINC00336 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00336

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for LINC00336
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for LINC00336 Gene

      No ASD Table

      Relevant External Links for LINC00336 Gene

      GeneLoc Exon Structure for
      LINC00336
      ECgene alternative splicing isoforms for
      LINC00336

      Expression for LINC00336 Gene

      mRNA expression in normal human tissues for LINC00336 Gene

      mRNA differential expression in normal tissues according to GTEx for LINC00336 Gene

      This gene is overexpressed in Testis (9.3).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for LINC00336 Gene

      SOURCE GeneReport for Unigene cluster for LINC00336 Gene Hs.520075

      genes like me logo Genes that share expressions with LINC00336: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for LINC00336 Gene

      Orthologs for LINC00336 Gene

      Evolution for LINC00336 Gene

      ENSEMBL:
      Gene Tree for LINC00336 (if available)
      TreeFam:
      Gene Tree for LINC00336 (if available)

      No data available for Orthologs for LINC00336 Gene

      Paralogs for LINC00336 Gene

      Selected SIMAP similar genes for LINC00336 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with LINC00336: view

      No data available for Paralogs for LINC00336 Gene

      Variants for LINC00336 Gene

      Sequence variations from dbSNP and Humsavar for LINC00336 Gene

      SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
      rs210162 - 33,593,119(+) TCCGC(A/G)GGGTG nc-transcript-variant
      rs210163 -- 33,593,387(+) GCCCT(C/T)AGGGG upstream-variant-2KB
      rs210164 -- 33,593,910(+) gtggc(A/G)cgatc upstream-variant-2KB
      rs210165 -- 33,593,956(+) gattc(G/T)cctgc upstream-variant-2KB
      rs375555 -- 33,589,964(+) CCAGC(C/T)CTTTT intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for LINC00336 Gene

      Variant ID Type Subtype PubMed ID
      nsv885770 CNV Loss 21882294
      dgv85n68 CNV Loss 17160897

      Relevant External Links for LINC00336 Gene

      HapMap Linkage Disequilibrium report
      LINC00336

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC00336 Gene

      Disorders for LINC00336 Gene

      No disorders were found for LINC00336 Gene.

      No data available for UniProtKB/Swiss-Prot for LINC00336 Gene

      Publications for LINC00336 Gene

      1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3
      2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

      Products for LINC00336 Gene

      • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00336
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00336
        • Block miRNA regulation of LINC00336 using miScript Target Protectors

        Sources for LINC00336 Gene

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