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Aliases for LINC00336 Gene

Subcategory (RNA class) for LINC00336 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00336 Gene

  • Long Intergenic Non-Protein Coding RNA 336 2 3 5
  • NCRNA00336 3 4
  • C6orf227 3 4
  • Chromosome 6 Open Reading Frame 227 2
  • Non-Protein Coding RNA 336 2

External Ids for LINC00336 Gene

Previous HGNC Symbols for LINC00336 Gene

  • C6orf227
  • NCRNA00336

Previous GeneCards Identifiers for LINC00336 Gene

  • GC06M033554

Summaries for LINC00336 Gene

GeneCards Summary for LINC00336 Gene

LINC00336 (Long Intergenic Non-Protein Coding RNA 336) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00336 Gene

Genomics for LINC00336 Gene

Regulatory Elements for LINC00336 Gene

Enhancers for LINC00336 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G033710 1.4 ENCODE dbSUPER 11.1 -118.1 -118074 2.0 HDGF CREB3L1 ARNT AGO1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 IP6K3 UQCC2 LINC00336 LEMD2 RPS18 MIR3934
GH06G033654 0.8 ENCODE 11.8 -62.0 -61988 1.2 KLF1 ZNF76 KLF17 CEBPG ZIC2 ZKSCAN1 ZNF121 HIC1 ZNF316 ZFHX2 BAK1 IP6K3 ITPR3 LINC00336 GGNBP1 LEMD2 LOC105375023 MIR3934
GH06G033566 0.7 ENCODE 11.4 +26.3 26323 1.4 CTCF DDX20 ZNF175 ZNF384 RAD21 ZNF766 ZNF316 ZNF584 TRIM24 ZNF639 BAK1 CUTA LINC00336 GC06P033564
GH06G033724 0.6 Ensembl 10.8 -131.2 -131163 0.2 KLF17 MAFG ZFHX2 ZNF316 MAFF ZNF600 MAFK EMSY IP6K3 LINC00336 MLN LEMD2 GRM4 GGNBP1 BAK1 UQCC2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00336 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00336 Gene

33,586,106 bp from pter
33,593,338 bp from pter
7,233 bases
Minus strand

Genomic View for LINC00336 Gene

Genes around LINC00336 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00336 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00336 Gene

Proteins for LINC00336 Gene

  • Protein details for LINC00336 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC00336
    Protein Accession:

    Protein attributes for LINC00336 Gene

    198 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00336 Gene

Post-translational modifications for LINC00336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00336 Gene

Domains & Families for LINC00336 Gene

Protein Domains for LINC00336 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00336: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00336 Gene

Function for LINC00336 Gene

genes like me logo Genes that share phenotypes with LINC00336: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00336 Gene

Localization for LINC00336 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00336 Gene

Pathways & Interactions for LINC00336 Gene

SuperPathways for LINC00336 Gene

No Data Available

Interacting Proteins for LINC00336 Gene

Gene Ontology (GO) - Biological Process for LINC00336 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00336 Gene

Drugs & Compounds for LINC00336 Gene

No Compound Related Data Available

Transcripts for LINC00336 Gene

mRNA/cDNA for LINC00336 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00336 Gene

Long intergenic non-protein coding RNA 336:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00336 Gene

No ASD Table

Relevant External Links for LINC00336 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00336 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00336 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00336 Gene

This gene is overexpressed in Testis (x9.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00336 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00336 Gene:


SOURCE GeneReport for Unigene cluster for LINC00336 Gene:

genes like me logo Genes that share expression patterns with LINC00336: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00336 Gene

Orthologs for LINC00336 Gene

Evolution for LINC00336 Gene

Gene Tree for LINC00336 (if available)
Gene Tree for LINC00336 (if available)

No data available for Orthologs for LINC00336 Gene

Paralogs for LINC00336 Gene

(1) SIMAP similar genes for LINC00336 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LINC00336: view

No data available for Paralogs for LINC00336 Gene

Variants for LINC00336 Gene

Sequence variations from dbSNP and Humsavar for LINC00336 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000819546 -- 33,585,787(+) CGGCG(A/G)CTCAG intron-variant, downstream-variant-500B
rs1000874483 -- 33,592,090(+) ACCTG(C/T)AATCC intron-variant
rs1000907117 -- 33,591,854(+) CTGAA(C/T)CTCAG intron-variant
rs1001785673 -- 33,591,879(+) CAATG(C/G)GTGAA intron-variant
rs1001818743 -- 33,592,134(+) TTGAA(C/T)CTGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00336 Gene

Variant ID Type Subtype PubMed ID
dgv85n68 CNV loss 17160897
esv3608630 CNV gain 21293372
nsv602833 CNV loss 21841781

Relevant External Links for LINC00336 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00336 Gene

Disorders for LINC00336 Gene

Relevant External Links for LINC00336

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC00336 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00336 Gene

Publications for LINC00336 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for LINC00336 Gene

Sources for LINC00336 Gene

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