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Aliases for LINC00336 Gene

Subcategory (RNA class) for LINC00336 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00336 Gene

  • Long Intergenic Non-Protein Coding RNA 336 2 3
  • NCRNA00336 3 4
  • C6orf227 3 4
  • Chromosome 6 Open Reading Frame 227 2
  • Non-Protein Coding RNA 336 2

External Ids for LINC00336 Gene

ORGUL Members for LINC00336 Gene

Previous Symbols for LINC00336 Gene

  • C6orf227
  • NCRNA00336

Summaries for LINC00336 Gene

GeneCards Summary for LINC00336 Gene

LINC00336 (Long Intergenic Non-Protein Coding RNA 336) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00336 Gene

Genomics for LINC00336 Gene

Genomic Location for LINC00336 Gene

Start:
33,586,106 bp from pter
End:
33,593,338 bp from pter
Size:
7,233 bases
Orientation:
Minus strand

Genomic View for LINC00336 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00336 Gene

No data available for Regulatory Elements for LINC00336 Gene

Proteins for LINC00336 Gene

  • Protein details for LINC00336 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUF6-NC336_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00336
    Protein Accession:
    Q6ZUF6
    Secondary Accessions:

    Protein attributes for LINC00336 Gene

    Size:
    198 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00336 Gene

Proteomics data for LINC00336 Gene at MOPED

Post-translational modifications for LINC00336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00336 Gene

Domains for LINC00336 Gene

Gene Families for LINC00336 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00336 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00336: view

No data available for UniProtKB/Swiss-Prot for LINC00336 Gene

Function for LINC00336 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00336 Gene

Localization for LINC00336 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC00336 Gene

Pathways for LINC00336 Gene

SuperPathways for LINC00336 Gene

No Data Available

Interacting Proteins for LINC00336 Gene

Gene Ontology (GO) - Biological Process for LINC00336 Gene

None

No data available for Pathways by source for LINC00336 Gene

Transcripts for LINC00336 Gene

mRNA/cDNA for LINC00336 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00336 Gene

Long intergenic non-protein coding RNA 336:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00336 Gene

No ASD Table

Relevant External Links for LINC00336 Gene

GeneLoc Exon Structure for
LINC00336
ECgene alternative splicing isoforms for
LINC00336

Expression for LINC00336 Gene

mRNA expression in normal human tissues for LINC00336 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00336 Gene

This gene is overexpressed in Testis (9.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for LINC00336 Gene

SOURCE GeneReport for Unigene cluster for LINC00336 Gene Hs.520075

genes like me logo Genes that share expressions with LINC00336: view

Orthologs for LINC00336 Gene

Evolution for LINC00336 Gene

ENSEMBL:
Gene Tree for LINC00336 (if available)
TreeFam:
Gene Tree for LINC00336 (if available)

No data available for Orthologs for LINC00336 Gene

Paralogs for LINC00336 Gene

Selected SIMAP similar genes for LINC00336 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LINC00336: view

No data available for Paralogs for LINC00336 Gene

Variants for LINC00336 Gene

Sequence variations from dbSNP and Humsavar for LINC00336 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs210162 - 33,593,119(+) TCCGC(A/G)GGGTG nc-transcript-variant
rs210163 -- 33,593,387(+) GCCCT(C/T)AGGGG upstream-variant-2KB
rs210164 -- 33,593,910(+) gtggc(A/G)cgatc upstream-variant-2KB
rs210165 -- 33,593,956(+) gattc(G/T)cctgc upstream-variant-2KB
rs375555 -- 33,589,964(+) CCAGC(C/T)CTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00336 Gene

Variant ID Type Subtype PubMed ID
nsv885770 CNV Loss 21882294
dgv85n68 CNV Loss 17160897

Relevant External Links for LINC00336 Gene

HapMap Linkage Disequilibrium report
LINC00336

Disorders for LINC00336 Gene

No disorders were found for LINC00336 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00336 Gene

Publications for LINC00336 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for LINC00336 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00336
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00336
    • Block miRNA regulation of LINC00336 using miScript Target Protectors

    Sources for LINC00336 Gene

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