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Aliases for LINC00304 Gene

Subcategory (RNA class) for LINC00304 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00304 Gene

  • Long Intergenic Non-Protein Coding RNA 304 2 3 5
  • NCRNA00304 3 4
  • C16orf81 3 4
  • Chromosome 16 Open Reading Frame 81 2
  • Non-Protein Coding RNA 304 2

External Ids for LINC00304 Gene

Previous HGNC Symbols for LINC00304 Gene

  • C16orf81
  • NCRNA00304

Previous GeneCards Identifiers for LINC00304 Gene

  • GC16P089226

Summaries for LINC00304 Gene

GeneCards Summary for LINC00304 Gene

LINC00304 (Long Intergenic Non-Protein Coding RNA 304) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00304 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00304 Gene

Genomics for LINC00304 Gene

Regulatory Elements for LINC00304 Gene

Enhancers for LINC00304 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H089993 1.6 Ensembl ENCODE dbSUPER 35.7 +836.1 836102 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A ZNF2 ZBTB7B SLC30A9 ENSG00000259877 AFG3L1P ANKRD11 MC1R TCF25 ACSF3 ZNF778 LINC00304 LOC101927863 SNORD68
GH16H088779 1.7 FANTOM5 ENCODE dbSUPER 19.4 -376.4 -376390 6 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ANKRD11 ZC3H18 APRT ENSG00000259877 LINC00304 BANP ENSG00000268218 SNORD68 CDT1 TRAPPC2L
GH16H089558 1.7 Ensembl ENCODE dbSUPER 19.4 +403.5 403480 7 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF610 GLIS1 ANKRD11 AFG3L1P TCF25 ZC3H18 ENSG00000259877 ENSG00000268218 RPL13 LOC101927863 MC1R ACSF3
GH16H088809 1.4 ENCODE dbSUPER 19.7 -347.9 -347869 4 HNRNPUL1 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ENSG00000259877 ANKRD11 ZC3H18 SNORD68 LOC101927863 GALNS ENSG00000268218 RPL13 ENSG00000260121 ACSF3
GH16H089920 1.3 ENCODE dbSUPER 19.4 +763.1 763128 4 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 FOS DEK PAF1 SP3 ANKRD11 TCF25 ENSG00000259877 LINC00304 TUBB3 AFG3L1P MC1R SNORD68 ENSG00000268218 RPL13
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00304 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00304 Gene

Chromosome:
16
Start:
89,159,146 bp from pter
End:
89,164,245 bp from pter
Size:
5,100 bases
Orientation:
Plus strand

Genomic View for LINC00304 Gene

Genes around LINC00304 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00304 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00304 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00304 Gene

Proteins for LINC00304 Gene

  • Protein details for LINC00304 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9R0-CP081_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00304
    Protein Accession:
    Q8N9R0

    Protein attributes for LINC00304 Gene

    Size:
    145 amino acids
    Molecular mass:
    15610 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00304 Gene

Post-translational modifications for LINC00304 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00304 Gene

Domains & Families for LINC00304 Gene

Protein Domains for LINC00304 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00304: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00304 Gene

Function for LINC00304 Gene

Phenotypes From GWAS Catalog for LINC00304 Gene

Phenotypes for LINC00304 Gene

genes like me logo Genes that share phenotypes with LINC00304: view

Animal Model Products

CRISPR Products

miRNA for LINC00304 Gene

miRTarBase miRNAs that target LINC00304

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LINC00304
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00304 Gene

Localization for LINC00304 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00304 Gene

Pathways & Interactions for LINC00304 Gene

SuperPathways for LINC00304 Gene

No Data Available

Interacting Proteins for LINC00304 Gene

Gene Ontology (GO) - Biological Process for LINC00304 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00304 Gene

Drugs & Compounds for LINC00304 Gene

No Compound Related Data Available

Transcripts for LINC00304 Gene

mRNA/cDNA for LINC00304 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00304 Gene

Long intergenic non-protein coding RNA 304:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LINC00304
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00304 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3
SP1: -
SP2:

Relevant External Links for LINC00304 Gene

GeneLoc Exon Structure for
LINC00304
ECgene alternative splicing isoforms for
LINC00304

Expression for LINC00304 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00304 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00304 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1) and Brain - Cerebellar Hemisphere (x10.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00304 Gene:

LINC00304

SOURCE GeneReport for Unigene cluster for LINC00304 Gene:

Hs.739138
genes like me logo Genes that share expression patterns with LINC00304: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00304 Gene

Orthologs for LINC00304 Gene

Evolution for LINC00304 Gene

ENSEMBL:
Gene Tree for LINC00304 (if available)
TreeFam:
Gene Tree for LINC00304 (if available)

No data available for Orthologs for LINC00304 Gene

Paralogs for LINC00304 Gene

No data available for Paralogs for LINC00304 Gene

Variants for LINC00304 Gene

Sequence variations from dbSNP and Humsavar for LINC00304 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000065246 -- 89,162,396(+) CCACA(C/T)GCGCA intron-variant
rs1000175478 -- 89,157,520(+) AGGTA(A/T)GTATG upstream-variant-2KB, utr-variant-5-prime
rs1000337118 -- 89,161,138(+) GGGCA(A/G)GGCCA nc-transcript-variant
rs1000674876 -- 89,161,843(+) CATCC(G/T)CCCCT intron-variant
rs1000732262 -- 89,160,702(+) GAAGC(A/C/T)GGAAG nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC00304 Gene

Variant ID Type Subtype PubMed ID
dgv3066n100 CNV gain 25217958
dgv5320n54 CNV loss 21841781
esv1010665 CNV deletion 20482838
esv2715119 CNV deletion 23290073
esv2715120 CNV deletion 23290073
esv3553896 CNV deletion 23714750
nsv1062378 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1109036 CNV deletion 24896259
nsv1141296 CNV duplication 24896259
nsv457620 CNV gain 19166990
nsv457621 CNV loss 19166990
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv509638 CNV insertion 20534489
nsv519104 CNV loss 19592680
nsv521217 CNV loss 19592680
nsv524478 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573720 CNV gain 21841781
nsv573723 CNV gain 21841781
nsv573724 CNV loss 21841781
nsv952072 CNV deletion 24416366

Relevant External Links for LINC00304 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00304

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00304 Gene

Disorders for LINC00304 Gene

Relevant External Links for LINC00304

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00304

No disorders were found for LINC00304 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00304 Gene

Publications for LINC00304 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 60

Products for LINC00304 Gene

Sources for LINC00304 Gene

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