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Aliases for LINC00269 Gene

Subcategory (RNA class) for LINC00269 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00269 Gene

  • Long Intergenic Non-Protein Coding RNA 269 2 3 5
  • NCRNA00269 3 4
  • CXorf62 3 4
  • Chromosome X Open Reading Frame 62 2
  • Non-Protein Coding RNA 269 2

External Ids for LINC00269 Gene

Previous HGNC Symbols for LINC00269 Gene

  • CXorf62
  • NCRNA00269

Previous GeneCards Identifiers for LINC00269 Gene

  • GC0XU901742
  • GC0XP068402

Summaries for LINC00269 Gene

GeneCards Summary for LINC00269 Gene

LINC00269 (Long Intergenic Non-Protein Coding RNA 269) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00269 Gene

Genomics for LINC00269 Gene

Regulatory Elements for LINC00269 Gene

Enhancers for LINC00269 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG069179 0.5 ENCODE 0.7 +0.0 36 0.2 RFX1 SMARCA4 RBBP5 EP300 LINC00269 PIR50037
GH0XG069195 0.7 ENCODE 0.4 +15.9 15876 0.2 TFAP4 SAP130 SP5 CEBPG TEAD3 TBX3 NCOR1 PBX2 TCF7 NR2F6 PJA1 PIR50037 LINC00269
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00269 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00269 Gene

Chromosome:
X
Start:
69,179,557 bp from pter
End:
69,209,924 bp from pter
Size:
30,368 bases
Orientation:
Plus strand

Genomic View for LINC00269 Gene

Genes around LINC00269 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00269 Gene

Proteins for LINC00269 Gene

  • Protein details for LINC00269 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N2A0-CX062_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00269
    Protein Accession:
    Q8N2A0

    Protein attributes for LINC00269 Gene

    Size:
    174 amino acids
    Molecular mass:
    18329 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00269 Gene

Post-translational modifications for LINC00269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00269 Gene

Domains & Families for LINC00269 Gene

Protein Domains for LINC00269 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00269: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00269 Gene

Function for LINC00269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00269 Gene

Localization for LINC00269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00269 Gene

Pathways & Interactions for LINC00269 Gene

SuperPathways for LINC00269 Gene

No Data Available

Interacting Proteins for LINC00269 Gene

Gene Ontology (GO) - Biological Process for LINC00269 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00269 Gene

Transcripts for LINC00269 Gene

mRNA/cDNA for LINC00269 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00269 Gene

No ASD Table

Relevant External Links for LINC00269 Gene

GeneLoc Exon Structure for
LINC00269
ECgene alternative splicing isoforms for
LINC00269

Expression for LINC00269 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00269 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00269 Gene

This gene is overexpressed in Pituitary (x10.7), Brain - Nucleus accumbens (basal ganglia) (x7.5), Brain - Amygdala (x5.2), Brain - Anterior cingulate cortex (BA24) (x4.7), and Brain - Putamen (basal ganglia) (x4.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00269 Gene



NURSA nuclear receptor signaling pathways regulating expression of LINC00269 Gene:

LINC00269
genes like me logo Genes that share expression patterns with LINC00269: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00269 Gene

Orthologs for LINC00269 Gene

Evolution for LINC00269 Gene

ENSEMBL:
Gene Tree for LINC00269 (if available)
TreeFam:
Gene Tree for LINC00269 (if available)

No data available for Orthologs for LINC00269 Gene

Paralogs for LINC00269 Gene

No data available for Paralogs for LINC00269 Gene

Variants for LINC00269 Gene

Sequence variations from dbSNP and Humsavar for LINC00269 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000017493 -- 69,195,272(+) GCTGT(A/G)GCCCT intron-variant
rs1000172652 -- 69,204,386(+) AGCCT(A/G)GAGAT nc-transcript-variant
rs1000223978 -- 69,203,315(+) GAGGA(A/T)GGCCT intron-variant
rs1000225642 -- 69,186,599(+) TCCTG(C/T)TTACA intron-variant
rs1000279354 -- 69,184,810(+) TTCTG(A/C)ATAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00269 Gene

Variant ID Type Subtype PubMed ID
dgv515n21 CNV gain 19592680
esv1584074 OTHER inversion 17803354
nsv527002 CNV gain 19592680

Relevant External Links for LINC00269 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00269

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00269 Gene

Disorders for LINC00269 Gene

Relevant External Links for LINC00269

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00269

No disorders were found for LINC00269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00269 Gene

Publications for LINC00269 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. A Novel GLP1 Receptor Interacting Protein ATP6ap2 Regulates Insulin Secretion in Pancreatic Beta Cells. (PMID: 26272612) Dai F.F. … Wheeler M.B. (J. Biol. Chem. 2015) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for LINC00269 Gene

Sources for LINC00269 Gene

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