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Aliases for LINC00226 Gene

Subcategory (RNA class) for LINC00226 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00226 Gene

  • Long Intergenic Non-Protein Coding RNA 226 2 3 5
  • Chromosome 14 Open Reading Frame 97 2
  • Non-Protein Coding RNA 226 2
  • NCRNA00226 3
  • C14orf97 3

External Ids for LINC00226 Gene

Previous HGNC Symbols for LINC00226 Gene

  • C14orf97
  • NCRNA00226

Previous GeneCards Identifiers for LINC00226 Gene

  • GC14P106746

Summaries for LINC00226 Gene

GeneCards Summary for LINC00226 Gene

LINC00226 (Long Intergenic Non-Protein Coding RNA 226) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00226 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00226 Gene

Genomics for LINC00226 Gene

Regulatory Elements for LINC00226 Gene

Enhancers for LINC00226 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H106286 0.6 dbSUPER 0.7 -0.8 -840 1.7 CTCF ETV1 SMC3 CREB1 ELF1 ZBTB40 LINC00226 IGHV1-24
GH14H106277 0.8 ENCODE dbSUPER 0.4 -10.0 -10005 0.2 SMARCA5 CTCF IKZF1 TRIM22 SMC3 ZNF143 RAD21 IGHV3-19 IGHV1-24 LINC00226
GH14H106283 0.2 dbSUPER 0.7 -3.3 -3335 1 LINC00226 IGHV1-24
GH14H106281 0.2 dbSUPER 0.4 -5.3 -5331 1.3 IGHV3-19 IGHV1-24 LINC00226
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00226 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00226 Gene

Genomic Locations for LINC00226 Gene
chr14:106,287,674-106,288,828
(GRCh38/hg38)
Size:
1,155 bases
Orientation:
Plus strand
chr14:106,744,269-106,744,975
(GRCh37/hg19)

Genomic View for LINC00226 Gene

Genes around LINC00226 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00226 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00226 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00226 Gene

Proteins for LINC00226 Gene

Post-translational modifications for LINC00226 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00226 Gene

Domains & Families for LINC00226 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00226 Gene

Function for LINC00226 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00226 Gene

Localization for LINC00226 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00226 Gene

Pathways & Interactions for LINC00226 Gene

SuperPathways for LINC00226 Gene

No Data Available

Interacting Proteins for LINC00226 Gene

Gene Ontology (GO) - Biological Process for LINC00226 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00226 Gene

Drugs & Compounds for LINC00226 Gene

No Compound Related Data Available

Transcripts for LINC00226 Gene

mRNA/cDNA for LINC00226 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00226 Gene

Long intergenic non-protein coding RNA 226:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00226 Gene

No ASD Table

Relevant External Links for LINC00226 Gene

GeneLoc Exon Structure for
LINC00226
ECgene alternative splicing isoforms for
LINC00226

Expression for LINC00226 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00226 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00226 Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00226 Gene:

LINC00226

SOURCE GeneReport for Unigene cluster for LINC00226 Gene:

Hs.733991
genes like me logo Genes that share expression patterns with LINC00226: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00226 Gene

Orthologs for LINC00226 Gene

Evolution for LINC00226 Gene

ENSEMBL:
Gene Tree for LINC00226 (if available)
TreeFam:
Gene Tree for LINC00226 (if available)

No data available for Orthologs for LINC00226 Gene

Paralogs for LINC00226 Gene

No data available for Paralogs for LINC00226 Gene

Variants for LINC00226 Gene

Sequence variations from dbSNP and Humsavar for LINC00226 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1006171755 -- 106,288,140(+) TCCGG(G/T)TCCTG nc-transcript-variant
rs1007062930 -- 106,288,512(+) ATGTT(C/T)AAGGT downstream-variant-500B
rs1007420997 -- 106,287,337(+) CCGCT(G/T)CTTCC upstream-variant-2KB
rs1009022491 -- 106,286,757(+) CATCT(C/G)GTCTC upstream-variant-2KB
rs1010014719 -- 106,288,447(+) TTTTT(G/T)TGTGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC00226 Gene

Variant ID Type Subtype PubMed ID
nsv832898 CNV gain+loss 17160897
nsv832897 CNV loss 17160897
nsv827160 CNV loss 20364138
nsv821677 CNV gain 15273396
nsv820254 CNV gain 19587683
nsv817649 CNV loss 17921354
nsv566622 CNV loss 21841781
nsv566621 CNV loss 21841781
nsv566592 CNV gain 21841781
nsv566547 CNV gain+loss 21841781
nsv566351 CNV loss 21841781
nsv517055 CNV gain+loss 19592680
nsv471673 CNV gain+loss 15918152
nsv469645 CNV gain+loss 16826518
nsv456477 CNV loss 19166990
nsv438265 CNV loss 16468122
nsv436184 CNV deletion 17901297
nsv436051 CNV insertion 17901297
nsv433424 CNV gain 18776910
nsv1448 CNV insertion 18451855
nsv1443 CNV deletion 18451855
nsv1160206 CNV deletion 26073780
nsv1153927 CNV deletion 26484159
nsv1115815 CNV deletion 24896259
nsv1071184 CNV deletion 25765185
nsv1054822 CNV gain 25217958
nsv1053673 CNV loss 25217958
nsv1042113 CNV loss 25217958
nsv1041013 CNV gain+loss 25217958
nsv1038315 CNV loss 25217958
nsv1036045 CNV loss 25217958
esv3892590 CNV gain 25118596
esv3892588 CNV loss 25118596
esv3892584 CNV gain 25118596
esv3892583 CNV gain 25118596
esv3635671 CNV loss 21293372
esv3635665 CNV loss 21293372
esv3581459 CNV loss 25503493
esv3568731 CNV gain 25503493
esv33760 CNV gain+loss 17666407
esv32669 CNV gain+loss 17666407
esv29981 CNV gain 17803354
esv2761366 CNV gain+loss 21179565
esv2760346 CNV gain+loss 21179565
esv2749343 CNV deletion 23290073
esv27023 CNV gain+loss 19812545
esv2676057 CNV deletion 23128226
esv2668522 CNV deletion 23128226
esv1002625 CNV gain 20482838
dgv693e212 CNV loss 25503493
dgv692e212 CNV gain 25503493
dgv691e212 CNV gain 25503493
dgv690e212 CNV gain 25503493
dgv689e212 CNV loss 25503493
dgv687e212 CNV loss 25503493
dgv684e212 CNV gain 25503493
dgv431e199 CNV deletion 23128226
dgv430e199 CNV deletion 23128226
dgv429e199 CNV deletion 23128226
dgv423e199 CNV deletion 23128226
dgv4073n54 CNV loss 21841781
dgv4064n54 CNV loss 21841781
dgv4063n54 CNV gain 21841781
dgv4062n54 CNV loss 21841781
dgv4058n54 CNV loss 21841781
dgv4055n54 CNV loss 21841781
dgv4054n54 CNV loss 21841781
dgv4053n54 CNV gain 21841781
dgv4050n54 CNV gain+loss 21841781
dgv4049n54 CNV loss 21841781
dgv4048n54 CNV loss 21841781
dgv4045n54 CNV gain 21841781
dgv4044n54 CNV loss 21841781
dgv4042n54 CNV loss 21841781
dgv4041n54 CNV loss 21841781
dgv394n67 CNV loss 20364138
dgv392n67 CNV loss 20364138
dgv297e201 CNV deletion 23290073
dgv2088n100 CNV gain 25217958
dgv2087n100 CNV gain 25217958
dgv2086n100 CNV loss 25217958
dgv2085n100 CNV gain 25217958
dgv2084n100 CNV gain 25217958
dgv2083n100 CNV loss 25217958
dgv2082n100 CNV gain 25217958
dgv2081n100 CNV gain 25217958
dgv2080n100 CNV gain 25217958
dgv2079n100 CNV gain 25217958
dgv2078n100 CNV gain 25217958
dgv2077n100 CNV loss 25217958
dgv2076n100 CNV gain 25217958
dgv2075n100 CNV loss 25217958
dgv2074n100 CNV gain 25217958
dgv2073n100 CNV gain 25217958
dgv2072n100 CNV loss 25217958
dgv2071n100 CNV loss 25217958
dgv2070n100 CNV gain 25217958
dgv2069n100 CNV loss 25217958
dgv2068n100 CNV gain 25217958
dgv2066n100 CNV gain 25217958
dgv2065n100 CNV gain+loss 25217958
dgv2061n100 CNV gain 25217958
dgv2060n100 CNV gain+loss 25217958
dgv2057n100 CNV loss 25217958
dgv2055n100 CNV loss 25217958
dgv2054n100 CNV gain 25217958
dgv2053n100 CNV gain+loss 25217958
dgv2043n100 CNV gain 25217958
dgv2042n100 CNV loss 25217958
dgv2040n100 CNV loss 25217958
dgv2037n100 CNV gain 25217958
dgv2026n100 CNV loss 25217958
dgv2020n100 CNV gain 25217958
dgv2019n100 CNV loss 25217958
dgv2018n100 CNV loss 25217958
dgv2017n100 CNV gain 25217958
dgv1996n100 CNV loss 25217958
dgv1985n100 CNV loss 25217958

Relevant External Links for LINC00226 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00226 Gene

Disorders for LINC00226 Gene

Relevant External Links for LINC00226

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00226

No disorders were found for LINC00226 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00226 Gene

Publications for LINC00226 Gene

  1. Analysis of distinct long noncoding RNA transcriptional fingerprints in pancreatic ductal adenocarcinoma. (PMID: 28220683) Yu X … Lv Z (Cancer medicine 2017) 2 3 60

Products for LINC00226 Gene

Sources for LINC00226 Gene

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