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Aliases for LINC00174 Gene

Subcategory (RNA class) for LINC00174 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LINC00174 Gene

  • Long Intergenic Non-Protein Coding RNA 174 2 3
  • Non-Protein Coding RNA 174 2
  • NCRNA00174 3

External Ids for LINC00174 Gene

ORGUL Members for LINC00174 Gene

Previous Symbols for LINC00174 Gene

  • NCRNA00174

Summaries for LINC00174 Gene

GeneCards Summary for LINC00174 Gene

LINC00174 (Long Intergenic Non-Protein Coding RNA 174) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00174 Gene

Genomics for LINC00174 Gene

Genomic Location for LINC00174 Gene

Start:
66,376,044 bp from pter
End:
66,401,338 bp from pter
Size:
25,295 bases
Orientation:
Minus strand

Genomic View for LINC00174 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00174 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00174 Gene

No data available for Regulatory Elements for LINC00174 Gene

Proteins for LINC00174 Gene

Post-translational modifications for LINC00174 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00174 Gene

Domains for LINC00174 Gene

Gene Families for LINC00174 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with LINC00174: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for LINC00174 Gene

Function for LINC00174 Gene

miRNA for LINC00174 Gene

miRTarBase miRNAs that target LINC00174

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for LINC00174 Gene

Localization for LINC00174 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC00174 Gene

Pathways for LINC00174 Gene

SuperPathways for LINC00174 Gene

No Data Available

Interacting Proteins for LINC00174 Gene

Gene Ontology (GO) - Biological Process for LINC00174 Gene

None

No data available for Pathways by source for LINC00174 Gene

Transcripts for LINC00174 Gene

Unigene Clusters for LINC00174 Gene

Long intergenic non-protein coding RNA 174:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00174 Gene

No ASD Table

Relevant External Links for LINC00174 Gene

GeneLoc Exon Structure for
LINC00174
ECgene alternative splicing isoforms for
LINC00174

Expression for LINC00174 Gene

mRNA expression in normal human tissues for LINC00174 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00174 Gene

This gene is overexpressed in Testis (4.3).

SOURCE GeneReport for Unigene cluster for LINC00174 Gene Hs.50755

genes like me logo Genes that share expressions with LINC00174: view

Orthologs for LINC00174 Gene

Evolution for LINC00174 Gene

ENSEMBL:
Gene Tree for LINC00174 (if available)
TreeFam:
Gene Tree for LINC00174 (if available)

No data available for Orthologs for LINC00174 Gene

Paralogs for LINC00174 Gene

No data available for Paralogs for LINC00174 Gene

Variants for LINC00174 Gene

Sequence variations from dbSNP and Humsavar for LINC00174 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs11764 -- 66,377,557(+) CACAC(A/C/G)TGCTG nc-transcript-variant
rs778679 -- 66,375,924(-) TATTA(C/T)TTACT downstream-variant-500B
rs778700 -- 66,401,463(-) GGGAT(A/G)GGTTT upstream-variant-2KB
rs778701 -- 66,401,431(-) GAGCT(A/C)CTTGC upstream-variant-2KB
rs778702 -- 66,399,848(-) GAATC(C/T)CTCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00174 Gene

Variant ID Type Subtype PubMed ID
esv2664145 CNV Deletion 23128226
nsv508458 CNV Loss 20534489
nsv888326 CNV Gain 21882294
esv32937 CNV Gain 17666407
nsv435858 CNV Deletion 17901297
esv999969 CNV Deletion 20482838
nsv511970 CNV Loss 21212237
esv2734596 CNV Deletion 23290073
esv2671443 CNV Deletion 23128226
esv1272173 CNV Deletion 17803354

Relevant External Links for LINC00174 Gene

HapMap Linkage Disequilibrium report
LINC00174

Disorders for LINC00174 Gene

No disorders were found for LINC00174 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00174 Gene

Publications for LINC00174 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for LINC00174 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00174
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00174
    • Block miRNA regulation of LINC00174 using miScript Target Protectors

    Sources for LINC00174 Gene

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