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Aliases for LINC00174 Gene

Subcategory (RNA class) for LINC00174 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00174 Gene

  • Long Intergenic Non-Protein Coding RNA 174 2 3 5
  • Non-Protein Coding RNA 174 2
  • NCRNA00174 3

External Ids for LINC00174 Gene

Previous HGNC Symbols for LINC00174 Gene

  • NCRNA00174

Previous GeneCards Identifiers for LINC00174 Gene

  • GC07M065842

Summaries for LINC00174 Gene

GeneCards Summary for LINC00174 Gene

LINC00174 (Long Intergenic Non-Protein Coding RNA 174) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00174 Gene

Genomics for LINC00174 Gene

Regulatory Elements for LINC00174 Gene

Enhancers for LINC00174 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F065749 1.1 ENCODE 12.8 +650.2 650229 2.8 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 SLC30A9 VKORC1L1 LOC100420547 LOC84214 LOC100996437 RABGEF1 LINC00174 ENSG00000230189 ENSG00000244657 ENSG00000227113 ENSG00000223473
GH07F065872 1 ENCODE 11.2 +527.9 527868 1.9 PKNOX1 SIN3A DMAP1 YY1 GTF3C2 SP3 SP5 MXD4 TBX21 ETV4 LOC100996437 VKORC1L1 RABGEF1 LOC84214 ENSG00000244657 LOC100420547 ENSG00000229180 ENSG00000223473 ENSG00000232546 LINC00174
GH07F066847 0.9 ENCODE 12 -447.1 -447081 1.5 ARID4B PTRF SLC30A9 FOS CEBPB HDAC8 CREB3 MEF2D ZNF589 KLF16 LOC644794 ENSG00000232559 RABGEF1 LINC00174 TPST1 STAG3L4 ENSG00000232546 GTF2IP23
GH07F065448 1.1 Ensembl ENCODE 8.2 +952.2 952211 1.4 HDAC1 CBX3 PKNOX1 TBL1XR1 ZBTB40 CHAMP1 ZNF766 GATA2 CBX5 ZNF366 CCT6P3 LINC00174 ENSG00000238124 ZNF92
GH07F066974 1 ENCODE 7.1 -573.9 -573945 0.6 ARNT FEZF1 DMAP1 ZNF2 YY1 ZNF766 FOS SP5 YY2 PPARG ENSG00000232559 LINC00174 GUSB LOC100996437 LOC644794 RN7SL43P TMEM248
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00174 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00174 Gene

Chromosome:
7
Start:
66,376,044 bp from pter
End:
66,401,338 bp from pter
Size:
25,295 bases
Orientation:
Minus strand

Genomic View for LINC00174 Gene

Genes around LINC00174 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00174 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00174 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00174 Gene

Proteins for LINC00174 Gene

Post-translational modifications for LINC00174 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00174 Gene

Domains & Families for LINC00174 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00174 Gene

Function for LINC00174 Gene

Phenotypes for LINC00174 Gene

GenomeRNAi human phenotypes for LINC00174:
genes like me logo Genes that share phenotypes with LINC00174: view

Animal Model Products

miRNA for LINC00174 Gene

miRTarBase miRNAs that target LINC00174

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00174 Gene

Localization for LINC00174 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00174 Gene

Pathways & Interactions for LINC00174 Gene

SuperPathways for LINC00174 Gene

No Data Available

Interacting Proteins for LINC00174 Gene

Gene Ontology (GO) - Biological Process for LINC00174 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00174 Gene

Transcripts for LINC00174 Gene

Unigene Clusters for LINC00174 Gene

Long intergenic non-protein coding RNA 174:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00174 Gene

No ASD Table

Relevant External Links for LINC00174 Gene

GeneLoc Exon Structure for
LINC00174
ECgene alternative splicing isoforms for
LINC00174

Expression for LINC00174 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00174 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00174 Gene

This gene is overexpressed in Testis (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00174 Gene:

LINC00174

SOURCE GeneReport for Unigene cluster for LINC00174 Gene:

Hs.50755
genes like me logo Genes that share expression patterns with LINC00174: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00174 Gene

Orthologs for LINC00174 Gene

Evolution for LINC00174 Gene

ENSEMBL:
Gene Tree for LINC00174 (if available)
TreeFam:
Gene Tree for LINC00174 (if available)

No data available for Orthologs for LINC00174 Gene

Paralogs for LINC00174 Gene

No data available for Paralogs for LINC00174 Gene

Variants for LINC00174 Gene

Sequence variations from dbSNP and Humsavar for LINC00174 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10279130 -- 66,394,668(+) cagac(A/G)gggtg intron-variant
rs10593646 -- 66,388,340(+) TATTC(-/ATTT)ATTTA intron-variant
rs1065265 -- 66,376,216(-) TTTAC(A/G)TCTTC nc-transcript-variant
rs1083554 -- 66,387,354(-) ccacc(A/G)tgtct intron-variant
rs111298438 -- 66,400,118(+) CCTAA(C/T)AGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00174 Gene

Variant ID Type Subtype PubMed ID
nsv981506 CNV duplication 23825009
nsv956968 CNV deletion 24416366
nsv950539 CNV deletion 24416366
nsv511970 CNV loss 21212237
nsv508458 CNV deletion 20534489
nsv435858 CNV deletion 17901297
esv999969 CNV deletion 20482838
esv3891135 CNV gain 25118596
esv3541802 CNV deletion 23714750
esv32937 CNV gain 17666407
esv2671443 CNV deletion 23128226
esv2664145 CNV deletion 23128226
esv1272173 CNV deletion 17803354

Relevant External Links for LINC00174 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00174

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00174 Gene

Disorders for LINC00174 Gene

Relevant External Links for LINC00174

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00174

No disorders were found for LINC00174 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00174 Gene

Publications for LINC00174 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00174 Gene

Sources for LINC00174 Gene

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