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Aliases for LIN28B-AS1 Gene

Subcategory (RNA class) for LIN28B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LIN28B-AS1 Gene

  • LIN28B Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 577 2 3
  • Chromosome 6 Open Reading Frame 220 2
  • DJ439I14.1 3
  • LINC00577 3
  • C6orf220 3

External Ids for LIN28B-AS1 Gene

Previous HGNC Symbols for LIN28B-AS1 Gene

  • C6orf220
  • LINC00577

Previous GeneCards Identifiers for LIN28B-AS1 Gene

  • GC06M104937

Summaries for LIN28B-AS1 Gene

GeneCards Summary for LIN28B-AS1 Gene

LIN28B-AS1 (LIN28B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIN28B-AS1 Gene

Genomics for LIN28B-AS1 Gene

Regulatory Elements for LIN28B-AS1 Gene

Enhancers for LIN28B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F104951 1.8 FANTOM5 Ensembl ENCODE 6.5 -14.5 -14472 8.5 PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 ENSG00000231628 LIN28B LIN28B-AS1 HACE1 RNU6-1106P GC06M105046
GH06F104940 1.4 FANTOM5 ENCODE 7 +0.4 365 2.1 PKNOX1 MLX ZFP64 ARID4B GLI4 DMAP1 ZNF48 ZNF2 GLIS2 ZNF143 LIN28B-AS1 HACE1 LIN28B
GH06F104942 0.4 Ensembl 0.8 -1.2 -1154 0.4 POLR2H ZBTB11 HACE1 LIN28B-AS1 GC06M105046 RNU6-1106P
GH06F104968 0.5 ENCODE 0.3 -28.1 -28122 1.1 TEAD4 TCF7L2 ZNF558 TRIM28 HACE1 LIN28B-AS1 GC06M105046 RNU6-1106P
GH06F104970 0.5 Ensembl 0.3 -28.9 -28854 0.2 RAD51 PRDM1 TRIM28 LIN28B-AS1 GC06M105046 RNU6-1106P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LIN28B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for LIN28B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001883341 -253 1000 PKNOX1 MLX ZFP64 ARID4B GLI4 DMAP1 ZNF48 ZNF2 GLIS2 ZNF143
ENSR00001883340 947 601 ZNF202 MXI1 RNF2 SAP130 KLF6 NFYC HBP1 SIN3B JUND SMARCA4

Genomic Location for LIN28B-AS1 Gene

Chromosome:
6
Start:
104,864,464 bp from pter
End:
104,941,447 bp from pter
Size:
76,984 bases
Orientation:
Minus strand

Genomic View for LIN28B-AS1 Gene

Genes around LIN28B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIN28B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIN28B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIN28B-AS1 Gene

Proteins for LIN28B-AS1 Gene

Post-translational modifications for LIN28B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIN28B-AS1 Gene

Domains & Families for LIN28B-AS1 Gene

Suggested Antigen Peptide Sequences for LIN28B-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LIN28B-AS1 Gene

Function for LIN28B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIN28B-AS1 Gene

Localization for LIN28B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIN28B-AS1 Gene

Pathways & Interactions for LIN28B-AS1 Gene

SuperPathways for LIN28B-AS1 Gene

No Data Available

Interacting Proteins for LIN28B-AS1 Gene

Gene Ontology (GO) - Biological Process for LIN28B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIN28B-AS1 Gene

Transcripts for LIN28B-AS1 Gene

mRNA/cDNA for LIN28B-AS1 Gene

(1) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LIN28B-AS1 Gene

Long intergenic non-protein coding RNA 577:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIN28B-AS1 Gene

No ASD Table

Relevant External Links for LIN28B-AS1 Gene

GeneLoc Exon Structure for
LIN28B-AS1
ECgene alternative splicing isoforms for
LIN28B-AS1

Expression for LIN28B-AS1 Gene

SOURCE GeneReport for Unigene cluster for LIN28B-AS1 Gene:

Hs.649249
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LIN28B-AS1 Gene

Orthologs for LIN28B-AS1 Gene

Evolution for LIN28B-AS1 Gene

ENSEMBL:
Gene Tree for LIN28B-AS1 (if available)
TreeFam:
Gene Tree for LIN28B-AS1 (if available)

No data available for Orthologs for LIN28B-AS1 Gene

Paralogs for LIN28B-AS1 Gene

No data available for Paralogs for LIN28B-AS1 Gene

Variants for LIN28B-AS1 Gene

Sequence variations from dbSNP and Humsavar for LIN28B-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10562331 -- 104,938,078(+) AAAAA(-/A)TTAGG intron-variant
rs10651252 -- 104,938,077(+) AAAAA(-/AA)TTAGG intron-variant
rs11156431 -- 104,936,617(+) CATCA(C/T)AGTCC nc-transcript-variant, upstream-variant-2KB
rs112284710 -- 104,940,398(+) CCGGG(A/T)GTCAC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112917617 -- 104,939,591(+) GAAAT(A/G)TATCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LIN28B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv216e55 CNV gain 17911159
esv23149 CNV loss 19812545
esv2759461 CNV gain 17122850
esv3610248 CNV gain 21293372
nsv1028763 CNV gain 25217958
nsv604433 CNV loss 21841781
nsv818450 CNV gain 17921354

Relevant External Links for LIN28B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIN28B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LIN28B-AS1 Gene

Disorders for LIN28B-AS1 Gene

Relevant External Links for LIN28B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIN28B-AS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIN28B-AS1

No disorders were found for LIN28B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIN28B-AS1 Gene

Publications for LIN28B-AS1 Gene

No publications were found for LIN28B-AS1 Gene.

Products for LIN28B-AS1 Gene

Sources for LIN28B-AS1 Gene

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