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Aliases for LIMS4 Gene

Aliases for LIMS4 Gene

  • LIM Zinc Finger Domain Containing 4 2 3
  • LIM And Senescent Cell Antigen-Like Domains 3-Like 2 3 5
  • LIMS3L 3 4 5
  • LIM And Senescent Cell Antigen-Like-Containing Domain Protein 3-Like 3 4
  • LIM-Type Zinc Finger Domains 4 2 3
  • Particularly Interesting New Cys-His Protein 3 3

External Ids for LIMS4 Gene

Previous HGNC Symbols for LIMS4 Gene

  • LIMS3L

Summaries for LIMS4 Gene

GeneCards Summary for LIMS4 Gene

LIMS4 (LIM Zinc Finger Domain Containing 4) is a Protein Coding gene. An important paralog of this gene is LDB3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMS4 Gene

Genomics for LIMS4 Gene

Regulatory Elements for LIMS4 Gene

Enhancers for LIMS4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LIMS4 on UCSC Golden Path with GeneCards custom track

Promoters for LIMS4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LIMS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for LIMS4 Gene

110,445,883 bp from pter
110,473,075 bp from pter
27,193 bases
Minus strand

Genomic View for LIMS4 Gene

Genes around LIMS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMS4 Gene

Proteins for LIMS4 Gene

  • Protein details for LIMS4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    LIM and senescent cell antigen-like-containing domain protein 4
    Protein Accession:
    Secondary Accessions:
    • C9K0W2

    Protein attributes for LIMS4 Gene

    117 amino acids
    Molecular mass:
    13251 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LIMS4 Gene

Proteomics data for LIMS4 Gene at MOPED

Post-translational modifications for LIMS4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LIMS4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LIMS4 Gene

Domains & Families for LIMS4 Gene

Gene Families for LIMS4 Gene

Protein Domains for LIMS4 Gene


Suggested Antigen Peptide Sequences for LIMS4 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 LIM zinc-binding domain.
  • Contains 1 LIM zinc-binding domain.
genes like me logo Genes that share domains with LIMS4: view

Function for LIMS4 Gene

Gene Ontology (GO) - Molecular Function for LIMS4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LIMS4: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMS4 Gene

Localization for LIMS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIMS4 Gene

Pathways & Interactions for LIMS4 Gene

SuperPathways for LIMS4 Gene

No Data Available

Interacting Proteins for LIMS4 Gene

Selected Interacting proteins: P0CW20-LIMS4_HUMAN for LIMS4 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for LIMS4 Gene


No data available for Pathways by source and SIGNOR curated interactions for LIMS4 Gene

Drugs & Compounds for LIMS4 Gene

No Compound Related Data Available

Transcripts for LIMS4 Gene

mRNA/cDNA for LIMS4 Gene

(2) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LIMS4 Gene

No ASD Table

Relevant External Links for LIMS4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LIMS4 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LIMS4 Gene

Orthologs for LIMS4 Gene

This gene was present in the common ancestor of animals.

Orthologs for LIMS4 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia MGC142792 36
  • 15 (a)
(Canis familiaris)
Mammalia -- 36
  • 26 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 15 (a)
(Mus musculus)
Mammalia Lims1 36
  • 27 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 14 (a)
(Gallus gallus)
Aves -- 36
-- 36
-- 36
-- 36
LIMS1 36
  • 15 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 23 (a)
(Danio rerio)
Actinopterygii lims1 36
  • 15 (a)
lims2 36
  • 15 (a)
fruit fly
(Drosophila melanogaster)
Insecta stck 36
  • 10 (a)
(Caenorhabditis elegans)
Secernentea unc-97 36
  • 7 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11312 36
  • 12 (a)
Species with no ortholog for LIMS4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for LIMS4 Gene

Gene Tree for LIMS4 (if available)
Gene Tree for LIMS4 (if available)

Paralogs for LIMS4 Gene

genes like me logo Genes that share paralogs with LIMS4: view

Variants for LIMS4 Gene

Sequence variations from dbSNP and Humsavar for LIMS4 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1821574 -- 110,455,705(+) TTTTT(G/T)GAGAC intron-variant
rs2042815 -- 110,470,199(-) TGACA(A/G)AATGG intron-variant
rs3975758 -- 110,454,389(+) gtggg(A/G)ggact intron-variant
rs56030158 -- 110,453,604(+) GACGC(A/G)ATCTC intron-variant
rs56039415 -- 110,453,295(+) TACAG(C/G)CACCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LIMS4 Gene

Disorders for LIMS4 Gene

Relevant External Links for LIMS4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LIMS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIMS4 Gene

Publications for LIMS4 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LIMS4 Gene

Sources for LIMS4 Gene