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Aliases for LIMS3-LOC440895 Gene

Subcategory (RNA class) for LIMS3-LOC440895 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LIMS3-LOC440895 Gene

  • LIMS3-LOC440895 Readthrough 3

External Ids for LIMS3-LOC440895 Gene

Previous GeneCards Identifiers for LIMS3-LOC440895 Gene

  • GC02U901641
  • GC02P110657

Summaries for LIMS3-LOC440895 Gene

GeneCards Summary for LIMS3-LOC440895 Gene

LIMS3-LOC440895 (LIMS3-LOC440895 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMS3-LOC440895 Gene

Genomics for LIMS3-LOC440895 Gene

Regulatory Elements for LIMS3-LOC440895 Gene

Enhancers for LIMS3-LOC440895 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LIMS3-LOC440895 on UCSC Golden Path with GeneCards custom track

Promoters for LIMS3-LOC440895 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LIMS3-LOC440895 on UCSC Golden Path with GeneCards custom track

Genomic Location for LIMS3-LOC440895 Gene

Chromosome:
2
Start:
109,898,432 bp from pter
End:
109,968,574 bp from pter
Size:
70,143 bases
Orientation:
Plus strand

Genomic View for LIMS3-LOC440895 Gene

Genes around LIMS3-LOC440895 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMS3-LOC440895 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMS3-LOC440895 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMS3-LOC440895 Gene

Proteins for LIMS3-LOC440895 Gene

Post-translational modifications for LIMS3-LOC440895 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIMS3-LOC440895 Gene

Domains & Families for LIMS3-LOC440895 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LIMS3-LOC440895 Gene

Function for LIMS3-LOC440895 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMS3-LOC440895 Gene

Localization for LIMS3-LOC440895 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIMS3-LOC440895 Gene

Pathways & Interactions for LIMS3-LOC440895 Gene

SuperPathways for LIMS3-LOC440895 Gene

No Data Available

Interacting Proteins for LIMS3-LOC440895 Gene

Gene Ontology (GO) - Biological Process for LIMS3-LOC440895 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIMS3-LOC440895 Gene

Drugs & Compounds for LIMS3-LOC440895 Gene

No Compound Related Data Available

Transcripts for LIMS3-LOC440895 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LIMS3-LOC440895 Gene

No ASD Table

Relevant External Links for LIMS3-LOC440895 Gene

GeneLoc Exon Structure for
LIMS3-LOC440895

No data available for mRNA/cDNA for LIMS3-LOC440895 Gene

Expression for LIMS3-LOC440895 Gene

mRNA expression in normal human tissues for LIMS3-LOC440895 Gene

mRNA expression in normal human tissues for LIMS3-LOC440895 Gene
genes like me logo Genes that share expression patterns with LIMS3-LOC440895: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LIMS3-LOC440895 Gene

Orthologs for LIMS3-LOC440895 Gene

No data available for Orthologs and Evolution for LIMS3-LOC440895 Gene

Paralogs for LIMS3-LOC440895 Gene

No data available for Paralogs for LIMS3-LOC440895 Gene

Variants for LIMS3-LOC440895 Gene

Sequence variations from dbSNP and Humsavar for LIMS3-LOC440895 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs336802 -- 109,935,740(+) CTTTG(C/T)CCCTA intron-variant
rs336803 -- 109,936,674(-) TACTT(G/T)TATGT intron-variant
rs336806 -- 109,939,340(+) gaaga(C/G)aaata intron-variant
rs451002 -- 109,945,228(+) ACACA(C/T)TGGTA intron-variant
rs1966906 -- 109,936,801(-) gagtg(C/T)agtgg nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LIMS3-LOC440895 Gene

Variant ID Type Subtype PubMed ID
nsv874777 CNV Gain 21882294
nsv510884 CNV Complex 20534489
esv2751812 CNV Loss 17911159
dgv4263n71 CNV Gain 21882294
nsv469649 CNV Complex 16826518
nsv508157 CNV Loss 20534489
esv28875 CNV Gain+Loss 19812545
nsv10114 CNV Gain+Loss 18304495
esv2677490 CNV Deletion 23128226
nsv7324 OTHER Inversion 18451855
esv29077 CNV Gain+Loss 19812545
nsv10123 CNV Gain+Loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LIMS3-LOC440895 Gene

Disorders for LIMS3-LOC440895 Gene

No disorders were found for LIMS3-LOC440895 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LIMS3-LOC440895 Gene

Publications for LIMS3-LOC440895 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LIMS3-LOC440895 Gene

Sources for LIMS3-LOC440895 Gene

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