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Aliases for LIMS3-LOC440895 Gene

Subcategory (RNA class) for LIMS3-LOC440895 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LIMS3-LOC440895 Gene

  • LIMS3-LOC440895 Readthrough 3

External Ids for LIMS3-LOC440895 Gene

Previous GeneCards Identifiers for LIMS3-LOC440895 Gene

  • GC02U901641
  • GC02P110657

Summaries for LIMS3-LOC440895 Gene

GeneCards Summary for LIMS3-LOC440895 Gene

LIMS3-LOC440895 (LIMS3-LOC440895 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMS3-LOC440895 Gene

Genomics for LIMS3-LOC440895 Gene

Regulatory Elements for LIMS3-LOC440895 Gene

Enhancers for LIMS3-LOC440895 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G109900 0.5 Ensembl 0.7 +2.6 2569 0.4 PAF1 TARDBP NBN LIMS3-LOC440895 ENSG00000284337 LOC105373547
GH02G109901 0.4 Ensembl 0.7 +3.1 3069 0.2 PAF1 LIMS3-LOC440895 ENSG00000284337 LOC105373547
GH02G109921 0.9 Ensembl 0.3 +23.6 23569 2.0 PKNOX1 ARNT TCF12 SLC30A9 ZNF592 SMARCA4 GLIS1 PBX2 HMBOX1 KDM1A LOC105373547 ENSG00000284337 LIMS3-LOC440895
GH02G109905 0.5 Ensembl 0.4 +7.4 7369 1.2 ZNF263 PAF1 TEAD1 MAFK TEAD3 LINC00116 ENSG00000284337 LIMS3-LOC440895 LOC105373547
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LIMS3-LOC440895 on UCSC Golden Path with GeneCards custom track

Promoters for LIMS3-LOC440895 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000121582 1068 601 PAF1

Genomic Location for LIMS3-LOC440895 Gene

Chromosome:
2
Start:
109,898,432 bp from pter
End:
109,968,574 bp from pter
Size:
70,143 bases
Orientation:
Plus strand

Genomic View for LIMS3-LOC440895 Gene

Genes around LIMS3-LOC440895 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMS3-LOC440895 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMS3-LOC440895 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMS3-LOC440895 Gene

Proteins for LIMS3-LOC440895 Gene

Post-translational modifications for LIMS3-LOC440895 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIMS3-LOC440895 Gene

Domains & Families for LIMS3-LOC440895 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LIMS3-LOC440895 Gene

Function for LIMS3-LOC440895 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMS3-LOC440895 Gene

Localization for LIMS3-LOC440895 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIMS3-LOC440895 Gene

Pathways & Interactions for LIMS3-LOC440895 Gene

SuperPathways for LIMS3-LOC440895 Gene

No Data Available

Interacting Proteins for LIMS3-LOC440895 Gene

Gene Ontology (GO) - Biological Process for LIMS3-LOC440895 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIMS3-LOC440895 Gene

Drugs & Compounds for LIMS3-LOC440895 Gene

No Compound Related Data Available

Transcripts for LIMS3-LOC440895 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LIMS3-LOC440895 Gene

No ASD Table

Relevant External Links for LIMS3-LOC440895 Gene

GeneLoc Exon Structure for
LIMS3-LOC440895

No data available for mRNA/cDNA for LIMS3-LOC440895 Gene

Expression for LIMS3-LOC440895 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LIMS3-LOC440895 Gene

mRNA expression in normal human tissues for LIMS3-LOC440895 Gene
genes like me logo Genes that share expression patterns with LIMS3-LOC440895: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIMS3-LOC440895 Gene

Orthologs for LIMS3-LOC440895 Gene

No data available for Orthologs and Evolution for LIMS3-LOC440895 Gene

Paralogs for LIMS3-LOC440895 Gene

No data available for Paralogs for LIMS3-LOC440895 Gene

Variants for LIMS3-LOC440895 Gene

Sequence variations from dbSNP and Humsavar for LIMS3-LOC440895 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1003290737 -- 109,963,427(+) CTCCT(C/G)CTCTG intron-variant
rs1003444195 -- 109,968,537(+) TAGAA(A/T)AAAAC nc-transcript-variant
rs1003909344 -- 109,968,610(+) TGTAA(C/T)TTCAA downstream-variant-500B
rs1003958509 -- 109,964,976(+) CATAA(A/C)GCATT intron-variant
rs1005579223 -- 109,918,035(+) GTAGG(C/T)CAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LIMS3-LOC440895 Gene

Variant ID Type Subtype PubMed ID
dgv1162e212 CNV gain 25503493
dgv1163e212 CNV loss 25503493
dgv1991n106 CNV deletion 24896259
dgv4037n100 CNV gain 25217958
dgv4038n100 CNV loss 25217958
dgv4047n100 CNV loss 25217958
dgv730e214 CNV gain 21293372
esv2677490 CNV deletion 23128226
esv2751812 CNV loss 17911159
esv28875 CNV gain+loss 19812545
esv29077 CNV gain+loss 19812545
esv3322917 CNV duplication 20981092
esv3331978 CNV duplication 20981092
esv3360420 CNV duplication 20981092
esv3376645 CNV duplication 20981092
esv3382968 CNV duplication 20981092
esv3451033 CNV duplication 20981092
esv3575292 CNV gain 25503493
esv3584010 CNV loss 25503493
esv3893059 CNV loss 25118596
nsv1003103 CNV gain+loss 25217958
nsv1010477 CNV gain+loss 25217958
nsv10114 CNV gain+loss 18304495
nsv10123 CNV gain+loss 18304495
nsv1072017 CNV deletion 25765185
nsv1072963 CNV deletion 25765185
nsv1149522 OTHER inversion 26484159
nsv469649 CNV loss 16826518
nsv508157 CNV deletion 20534489
nsv510884 OTHER complex 20534489
nsv582654 CNV loss 21841781
nsv582655 CNV loss 21841781
nsv582695 CNV loss 21841781
nsv7324 OTHER inversion 18451855
nsv953790 CNV deletion 24416366
nsv953791 CNV deletion 24416366
nsv963691 CNV duplication 23825009
nsv963694 CNV duplication 23825009
nsv979089 CNV duplication 23825009
nsv979092 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LIMS3-LOC440895 Gene

Disorders for LIMS3-LOC440895 Gene

Relevant External Links for LIMS3-LOC440895

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIMS3-LOC440895

No disorders were found for LIMS3-LOC440895 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIMS3-LOC440895 Gene

Publications for LIMS3-LOC440895 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LIMS3-LOC440895 Gene

Sources for LIMS3-LOC440895 Gene

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