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Aliases for LIMD1-AS1 Gene

Subcategory (RNA class) for LIMD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LIMD1-AS1 Gene

  • LIMD1 Antisense RNA 1 2 3 5
  • LIMD1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for LIMD1-AS1 Gene

Previous GeneCards Identifiers for LIMD1-AS1 Gene

  • GC03M045719

Summaries for LIMD1-AS1 Gene

GeneCards Summary for LIMD1-AS1 Gene

LIMD1-AS1 (LIMD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LIMD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMD1-AS1 Gene

Genomics for LIMD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for LIMD1-AS1 Gene

Promoters and enhancers for LIMD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I045638 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +45.5 45524 9.6 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 SLC30A9 E2F8 FOS LIMD1 SACM1L LARS2-AS1 LIMD1-AS1 LARS2 CLEC3B GC03M045664 PIR32515
GH03I045664 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.8 +22.4 22422 5.2 HDGF PKNOX1 ATF1 SMAD1 ARNT ARID4B SIN3A IRF4 NCOA2 GTF3C2 GC03M045664 SACM1L LIMD1 LIMD1-AS1 LARS2-AS1 LARS2 PIR52455
GH03I045653 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 +33.7 33725 4.2 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 GLIS2 SACM1L LIMD1 ZNF502 RN7SL145P LARS2-AS1 LIMD1-AS1 CCR3 GC03M045664 PIR32515
GH03I045659 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 +28.9 28900 1.9 ELF3 RB1 ARID4B RAD21 ZNF143 FOS IKZF2 THAP11 RXRA REST LIMD1 LIMD1-AS1 SACM1L LARS2-AS1 LARS2 GC03M045664 PIR32515
GH03I045611 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.4 +76.3 76335 3 HDGF FEZF1 BATF KLF5 ZNF121 ZNF366 SCRT2 ZNF143 ATF7 IKZF2 LIMD1 SACM1L RPS24P8 ZNF502 LIMD1-AS1 PIR32515 GC03M045664
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LIMD1-AS1 Gene

Genomic Locations for LIMD1-AS1 Gene
chr3:45,678,165-45,689,134
(GRCh38/hg38)
Size:
10,970 bases
Orientation:
Minus strand
chr3:45,719,657-45,730,626
(GRCh37/hg19)

Genomic View for LIMD1-AS1 Gene

Genes around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMD1-AS1 Gene

Proteins for LIMD1-AS1 Gene

Post-translational modifications for LIMD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIMD1-AS1 Gene

Domains & Families for LIMD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LIMD1-AS1 Gene

Function for LIMD1-AS1 Gene

Phenotypes From GWAS Catalog for LIMD1-AS1 Gene

Phenotypes for LIMD1-AS1 Gene

GenomeRNAi human phenotypes for LIMD1-AS1:
genes like me logo Genes that share phenotypes with LIMD1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMD1-AS1 Gene

Localization for LIMD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LIMD1-AS1 Gene

Pathways & Interactions for LIMD1-AS1 Gene

SuperPathways for LIMD1-AS1 Gene

No Data Available

Interacting Proteins for LIMD1-AS1 Gene

Gene Ontology (GO) - Biological Process for LIMD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIMD1-AS1 Gene

Drugs & Compounds for LIMD1-AS1 Gene

No Compound Related Data Available

Transcripts for LIMD1-AS1 Gene

mRNA/cDNA for LIMD1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LIMD1-AS1 Gene

LIMD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIMD1-AS1 Gene

No ASD Table

Relevant External Links for LIMD1-AS1 Gene

GeneLoc Exon Structure for
LIMD1-AS1
ECgene alternative splicing isoforms for
LIMD1-AS1

Expression for LIMD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LIMD1-AS1 Gene

SOURCE GeneReport for Unigene cluster for LIMD1-AS1 Gene:

Hs.712889
genes like me logo Genes that share expression patterns with LIMD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIMD1-AS1 Gene

Orthologs for LIMD1-AS1 Gene

Evolution for LIMD1-AS1 Gene

ENSEMBL:
Gene Tree for LIMD1-AS1 (if available)
TreeFam:
Gene Tree for LIMD1-AS1 (if available)

No data available for Orthologs for LIMD1-AS1 Gene

Paralogs for LIMD1-AS1 Gene

No data available for Paralogs for LIMD1-AS1 Gene

Variants for LIMD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LIMD1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000231345 -- 45,687,085(-) C/T intron_variant
rs1000504897 -- 45,682,175(-) T/C intron_variant
rs1000561993 -- 45,688,672(-) A/C non_coding_transcript_variant
rs1000577135 -- 45,680,498(-) A/G intron_variant
rs1000593105 -- 45,688,280(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LIMD1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2725223 CNV deletion 23290073
esv34130 CNV loss 18971310

Additional Variant Information for LIMD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIMD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LIMD1-AS1 Gene

Disorders for LIMD1-AS1 Gene

Additional Disease Information for LIMD1-AS1

No disorders were found for LIMD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIMD1-AS1 Gene

Publications for LIMD1-AS1 Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  2. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark SL … van den Oord EJ (Psychological medicine 2012) 3 58

Products for LIMD1-AS1 Gene

Sources for LIMD1-AS1 Gene

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