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Aliases for LIMD1-AS1 Gene

Subcategory (RNA class) for LIMD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LIMD1-AS1 Gene

  • LIMD1 Antisense RNA 1 2 3 5
  • LIMD1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for LIMD1-AS1 Gene

Previous GeneCards Identifiers for LIMD1-AS1 Gene

  • GC03M045719

Summaries for LIMD1-AS1 Gene

GeneCards Summary for LIMD1-AS1 Gene

LIMD1-AS1 (LIMD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMD1-AS1 Gene

Genomics for LIMD1-AS1 Gene

Regulatory Elements for LIMD1-AS1 Gene

Enhancers for LIMD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G045638 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +45.5 45524 9.6 CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 MEF2D LIMD1 SACM1L XCR1 RPS24P8 ZNF501 RN7SL145P LARS2-AS1 LIMD1-AS1 EXOSC7 ZDHHC3
GH03G045664 1.5 Ensembl ENCODE dbSUPER 12.8 +22.4 22422 5.2 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B SIN3A TCF12 GTF3C2 ZNF766 SACM1L LIMD1 LIMD1-AS1 RN7SL145P LARS2-AS1 XCR1 EXOSC7 ZDHHC3 LARS2 GC03M045664
GH03G045653 1.5 Ensembl ENCODE dbSUPER 11.1 +33.7 33725 4.2 HDGF PKNOX1 FOXA2 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 GLIS2 ZNF143 SACM1L LIMD1 ZNF502 RN7SL145P LARS2-AS1 LIMD1-AS1 CCR3 GC03M045664 PIR32515
GH03G045659 1.4 Ensembl ENCODE dbSUPER 11.7 +28.9 28900 1.9 ELF3 CBX3 PKNOX1 RB1 ARID4B RAD21 ZSCAN5C ZNF143 FOS RELB LIMD1 SACM1L LIMD1-AS1 LARS2-AS1 LARS2 GC03M045664 PIR32515
GH03G045605 1.5 Ensembl ENCODE dbSUPER 10.8 +81.4 81427 3.7 PKNOX1 FOXA2 ATF1 ARID4B SIN3A SLC30A9 FOS ZNF263 ZHX2 PPARG LIMD1 SACM1L LIMD1-AS1 LARS2 CLEC3B PIR32515 GC03M045664
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for LIMD1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000151766 -67 2800 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 SSRP1

Genomic Location for LIMD1-AS1 Gene

Chromosome:
3
Start:
45,678,165 bp from pter
End:
45,689,134 bp from pter
Size:
10,970 bases
Orientation:
Minus strand

Genomic View for LIMD1-AS1 Gene

Genes around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMD1-AS1 Gene

Proteins for LIMD1-AS1 Gene

Post-translational modifications for LIMD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIMD1-AS1 Gene

Domains & Families for LIMD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LIMD1-AS1 Gene

Function for LIMD1-AS1 Gene

Phenotypes for LIMD1-AS1 Gene

GenomeRNAi human phenotypes for LIMD1-AS1:
genes like me logo Genes that share phenotypes with LIMD1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMD1-AS1 Gene

Localization for LIMD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIMD1-AS1 Gene

Pathways & Interactions for LIMD1-AS1 Gene

SuperPathways for LIMD1-AS1 Gene

No Data Available

Interacting Proteins for LIMD1-AS1 Gene

Gene Ontology (GO) - Biological Process for LIMD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIMD1-AS1 Gene

Drugs & Compounds for LIMD1-AS1 Gene

No Compound Related Data Available

Transcripts for LIMD1-AS1 Gene

mRNA/cDNA for LIMD1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LIMD1-AS1 Gene

LIMD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIMD1-AS1 Gene

No ASD Table

Relevant External Links for LIMD1-AS1 Gene

GeneLoc Exon Structure for
LIMD1-AS1
ECgene alternative splicing isoforms for
LIMD1-AS1

Expression for LIMD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LIMD1-AS1 Gene

SOURCE GeneReport for Unigene cluster for LIMD1-AS1 Gene:

Hs.712889
genes like me logo Genes that share expression patterns with LIMD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIMD1-AS1 Gene

Orthologs for LIMD1-AS1 Gene

Evolution for LIMD1-AS1 Gene

ENSEMBL:
Gene Tree for LIMD1-AS1 (if available)
TreeFam:
Gene Tree for LIMD1-AS1 (if available)

No data available for Orthologs for LIMD1-AS1 Gene

Paralogs for LIMD1-AS1 Gene

No data available for Paralogs for LIMD1-AS1 Gene

Variants for LIMD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LIMD1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000231345 -- 45,687,085(+) TACAT(C/T)AAGAG intron-variant
rs1000504897 -- 45,682,175(+) TTTTT(C/T)CTTTT intron-variant
rs1000561993 -- 45,688,672(+) GCATC(A/C)TCCGG nc-transcript-variant, upstream-variant-2KB
rs1000577135 -- 45,680,498(+) TTTTA(A/G)TAGAG intron-variant, utr-variant-3-prime
rs1000593105 -- 45,688,280(+) ATAAT(A/C)CCCCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LIMD1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2725223 CNV deletion 23290073
esv34130 CNV loss 18971310

Relevant External Links for LIMD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIMD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LIMD1-AS1 Gene

Disorders for LIMD1-AS1 Gene

Relevant External Links for LIMD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIMD1-AS1

No disorders were found for LIMD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIMD1-AS1 Gene

Publications for LIMD1-AS1 Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  2. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark S.L. … van den Oord E.J. (Psychol Med 2012) 3 64

Products for LIMD1-AS1 Gene

Sources for LIMD1-AS1 Gene

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