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Aliases for LIMD1-AS1 Gene

Subcategory (RNA class) for LIMD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LIMD1-AS1 Gene

  • LIMD1 Antisense RNA 1 2 3 5
  • LIMD1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for LIMD1-AS1 Gene

Previous GeneCards Identifiers for LIMD1-AS1 Gene

  • GC03M045719

Summaries for LIMD1-AS1 Gene

GeneCards Summary for LIMD1-AS1 Gene

LIMD1-AS1 (LIMD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMD1-AS1 Gene

Genomics for LIMD1-AS1 Gene

Regulatory Elements for LIMD1-AS1 Gene

Enhancers for LIMD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F045664 1.3 Ensembl ENCODE 12.8 +22.4 22422 5.2 HDGF PKNOX1 ATF1 ARNT CREB3L1 ARID4B SIN3A GTF3C2 FOS JUNB SACM1L LIMD1 LIMD1-AS1 RN7SL145P LARS2-AS1 XCR1 EXOSC7 ZDHHC3 LARS2 GC03M045664
GH03F045712 0.2 ENCODE 11.9 -23.5 -23491 1.0 INSM2 ZEB1 HIC1 ZNF366 SCRT2 KLF8 ZNF639 GFI1B ZEB2 TSHZ1 SACM1L LIMD1-AS1 LZTFL1 RN7SL145P
GH03F045659 0.8 Ensembl ENCODE 11.7 +28.9 28900 1.9 ELF3 CBX3 PKNOX1 ARID4B RAD21 ZNF143 FOS THAP11 ELF1 REST LIMD1 LIMD1-AS1 SACM1L LARS2-AS1 LARS2 GC03M045664 PIR32515
GH03F045653 0.6 Ensembl ENCODE 11.1 +33.8 33774 4.3 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 GLIS2 ZNF143 ZNF548 SACM1L LIMD1 ZNF502 RN7SL145P LARS2-AS1 LIMD1-AS1 CCR3 GC03M045664 PIR32515
GH03F045658 0.2 ENCODE 11.1 +30.8 30752 0.2 TBL1XR1 IKZF1 NBN TRIM22 ZBTB33 TBX21 LIMD1 LARS2-AS1 LIMD1-AS1 SACM1L GC03M045664 PIR32515
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for LIMD1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001362789 -166 3001 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for LIMD1-AS1 Gene

Chromosome:
3
Start:
45,678,165 bp from pter
End:
45,689,134 bp from pter
Size:
10,970 bases
Orientation:
Minus strand

Genomic View for LIMD1-AS1 Gene

Genes around LIMD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIMD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIMD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMD1-AS1 Gene

Proteins for LIMD1-AS1 Gene

Post-translational modifications for LIMD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIMD1-AS1 Gene

Domains & Families for LIMD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LIMD1-AS1 Gene

Function for LIMD1-AS1 Gene

Phenotypes for LIMD1-AS1 Gene

GenomeRNAi human phenotypes for LIMD1-AS1:
genes like me logo Genes that share phenotypes with LIMD1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIMD1-AS1 Gene

Localization for LIMD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LIMD1-AS1 Gene

Pathways & Interactions for LIMD1-AS1 Gene

SuperPathways for LIMD1-AS1 Gene

No Data Available

Interacting Proteins for LIMD1-AS1 Gene

Gene Ontology (GO) - Biological Process for LIMD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIMD1-AS1 Gene

Transcripts for LIMD1-AS1 Gene

mRNA/cDNA for LIMD1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LIMD1-AS1 Gene

LIMD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIMD1-AS1 Gene

No ASD Table

Relevant External Links for LIMD1-AS1 Gene

GeneLoc Exon Structure for
LIMD1-AS1
ECgene alternative splicing isoforms for
LIMD1-AS1

Expression for LIMD1-AS1 Gene

mRNA expression in normal human tissues for LIMD1-AS1 Gene

SOURCE GeneReport for Unigene cluster for LIMD1-AS1 Gene:

Hs.712889
genes like me logo Genes that share expression patterns with LIMD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LIMD1-AS1 Gene

Orthologs for LIMD1-AS1 Gene

Evolution for LIMD1-AS1 Gene

ENSEMBL:
Gene Tree for LIMD1-AS1 (if available)
TreeFam:
Gene Tree for LIMD1-AS1 (if available)

No data available for Orthologs for LIMD1-AS1 Gene

Paralogs for LIMD1-AS1 Gene

No data available for Paralogs for LIMD1-AS1 Gene

Variants for LIMD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LIMD1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1047937 -- 45,679,619(-) AAATC(C/T)GGCCA nc-transcript-variant, utr-variant-3-prime
rs111270047 -- 45,687,580(+) AAGCC(A/G)AGATC intron-variant, upstream-variant-2KB
rs11130073 -- 45,686,269(+) tcctc(A/G)gggct intron-variant
rs111609798 -- 45,686,888(+) GGTCT(C/G)GAACT intron-variant
rs111623960 -- 45,683,803(+) TTGTT(A/G)CTTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LIMD1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2725223 CNV deletion 23290073
esv34130 CNV loss 18971310

Relevant External Links for LIMD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIMD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LIMD1-AS1 Gene

Disorders for LIMD1-AS1 Gene

Relevant External Links for LIMD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIMD1-AS1

No disorders were found for LIMD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIMD1-AS1 Gene

Publications for LIMD1-AS1 Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  2. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark S.L. … van den Oord E.J. (Psychol Med 2012) 3 64

Products for LIMD1-AS1 Gene

Sources for LIMD1-AS1 Gene

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