Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

LIMA1 Gene

protein-coding   GIFtS: 50
GCID: GC12M050569

LIM domain and actin binding 1

 Explore 6 diseases affiliated with
LIMA1 via our new
 Human Malady Compendium 
Biological research products
for LIMA1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
LIM Domain And Actin Binding 11 2     Epithelial Protein Lost In Neoplasm Beta2
EPLIN1 2 3 5     LIM Domain And Actin-Binding Protein 12
SREBP32 3 5     Sterol Regulatory Element Binding Protein 32
1110021C24Rik2     Epithelial Protein Lost In Neoplasm3

External Ids:    HGNC: 246361   Entrez Gene: 514742   Ensembl: ENSG000000504057   OMIM: 6083645   UniProtKB: Q9UHB63   

Export aliases for LIMA1 gene to outside databases

Previous GC identifers: GC12M048856 GC12M047604


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for LIMA1:
This gene encodes a cytoskeleton-associated protein that inhibits actin filament depolymerization and cross-links
filaments in bundles. It is downregulated in some cancer cell lines. Alternatively spliced transcript variants
encoding different isoforms have been described for this gene, and expression of some of the variants maybe
independently regulated. (provided by RefSeq, Aug 2011)

UniProtKB/Swiss-Prot: LIMA1_HUMAN, Q9UHB6
Function: Binds to actin monomers and filaments. Increases the number and size of actin stress fibers and inhibits
membrane ruffling. Inhibits actin filament depolymerization. Bundles actin filaments, delays filament nucleation and
reduces formation of branched filaments

Gene Wiki entry for LIMA1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the LIMA1 gene promoter:
         AML1a   SREBP-1c   Gfi-1   SREBP-1b   HEN1   SREBP-1a   POU2F1   POU2F1a   Hlf   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): LIMA1 promoter sequence
   Search SABiosciences Chromatin IP Primers for LIMA1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LIMA1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13   Ensembl cytogenetic band:  12q13.12   HGNC cytogenetic band: 12q13.12

LIMA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LIMA1 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M050569:  view genomic region     (about GC identifiers)

Start:
50,569,563 bp from pter      End:
50,677,353 bp from pter
Size:
107,791 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: LIMA1_HUMAN, Q9UHB6 (See protein sequence)
Recommended Name: LIM domain and actin-binding protein 1  
Size: 759 amino acids; 85226 Da
Subcellular location: Cytoplasm. Cell junction, focal adhesion. Cytoplasm, cytoskeleton. Note=This cytoskeletal protein
co-localizes with actin stress fibers and focal adhesion plaques
Sequence caution: Sequence=AAG17267.1; Type=Frameshift; Positions=365, 662; Sequence=BAA91120.1; Type=Frameshift;
Positions=697;
1 PDB 3D structure from and Proteopedia for LIMA1:
2D8Y (3D)    
Secondary accessions: B2RB09 Q2TAN7 Q9BVF2 Q9H8J1 Q9HBN5 Q9NX96 Q9NXC3 Q9NXU6 Q9P0H8 Q9UHB5
Alternative promoter usage, Alternative splicing: 4 isoforms:  Q9UHB6-1   Q9UHB6-2   Q9UHB6-3   Q9UHB6-4   (Produced by alternative splicing. Contains a phosphoserine at position 343)

Explore the universe of human proteins at neXtProt for LIMA1: NX_Q9UHB6

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9UHB6

  • LIMA1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (4 alternative transcripts): 
    NP_001107018.1  NP_001107019.1  NP_001230704.1  NP_057441.1  

    ENSEMBL proteins: 
     ENSP00000448463   ENSP00000448706   ENSP00000450266   ENSP00000378400   ENSP00000340184  
     ENSP00000448779   ENSP00000450087   ENSP00000448411   ENSP00000447720   ENSP00000447975  
     ENSP00000449890  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 2): LIMA1
    OriGene Custom Protein Services for LIMA1 
    GenScript Custom Purified and Recombinant Proteins Services for LIMA1
    Novus Biologicals LIMA1 Protein
    Novus Biologicals LIMA1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for LIMA1

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001725stress fiber IDA10618726
    GO:0005737cytoplasm IDA--
    GO:0005886plasma membrane IDA--
    GO:0005925focal adhesion IDA10618726
    GO:0015629actin cytoskeleton IDA--


    LIMA1 for ontologies           About GeneDecksing



    LIMA1 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for LIMA1 
    GenScript Custom Superior Antibodies Services for LIMA1
    Novus Biologicals LIMA1 Antibodies
    Search for Antibodies for LIMA1 at Abcam  
    Uscn Antibodies for LIMA1
    Search ThermoFisher Antibodies for LIMA1

    Assay Products for LIMA1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for LIMA1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for LIMA1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    LIMA1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR001781 Znf_LIM

    Graphical View of Domain Structure for InterPro Entry Q9UHB6

    ProtoNet protein and cluster: Q9UHB6

    1 Blocks protein family: IPB001781 Zn-binding protein

    UniProtKB/Swiss-Prot: LIMA1_HUMAN, Q9UHB6
    Domain: Contains at least 2 actin-binding domains, one on each side of the LIM domain. Both domains bind actin monomers
    and filaments. The C-terminal domain binds filaments more efficiently than the N-terminus
    Similarity: Contains 1 LIM zinc-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: LIMA1_HUMAN, Q9UHB6
    Function: Binds to actin monomers and filaments. Increases the number and size of actin stress fibers and inhibits
    membrane ruffling. Inhibits actin filament depolymerization. Bundles actin filaments, delays filament nucleation and
    reduces formation of branched filaments
    Induction: Down-regulated in some cancer cell lines. Isoform Alpha is induced by serum. Isoform Beta is constitutively
    expressed

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 3): LIMA1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat LIMA1
    8/17 QIAGEN miScript miRNA Assays for microRNAs that regulate LIMA1 (see all 17):
    hsa-miR-106a hsa-miR-938 hsa-miR-216b hsa-miR-519a hsa-miR-93 hsa-miR-526b* hsa-miR-548c-3p hsa-miR-17
    SwitchGear 3'UTR luciferase reporter plasmidLIMA1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LIMA1 (see all 4)
    OriGene shRNA RFP: LIMA1
    OriGene siRNA: LIMA1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LIMA1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for LIMA1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): LIMA1 (NM_001113547)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for LIMA1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LIMA1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for LIMA1
    Search LifeMap BioReagents cell lines for LIMA1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LIMA1

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003785actin monomer binding IDA12566430
    GO:0008270zinc ion binding IEA--
    GO:0051015actin filament binding IDA12566430


    LIMA1 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Stabilization and expansion of the E-cadherin adherens junction
    Stabilization and expansion of the E-cadherin adherens junction1.00


    1 BioSystems Pathway for LIMA1 
        Stabilization and expansion of the E-cadherin adherens junction


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LIMA1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 12)

    5/21 Interacting proteins for LIMA1 (Q9UHB62, 3 ENSP000003784004) via UniProtKB, MINT, STRING, and/or I2D (see all 21)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAP3K3Q997592, 3MINT-48519 I2D: score=1 
    RIPK3Q9Y5722, 3MINT-49153 I2D: score=1 
    YWHAZP631042, 3MINT-3295953 I2D: score=1 
    ESR2Q927313, ENSP000003439254I2D: score=1 STRING: ENSP00000343925
    SVILO954253, ENSP000003481284I2D: score=1 STRING: ENSP00000348128
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0030835negative regulation of actin filament depolymerization IDA12566430
    GO:0031529ruffle organization IDA12566430
    GO:0051017actin filament bundle assembly IDA12566430


    LIMA1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for LIMA1
    Search CenterWatch for drugs/clinical trials and news about LIMA1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for LIMA1 gene (4 alternative transcripts): 
    NM_001113546.1  NM_001113547.1  NM_001243775.1  NM_016357.4  

    Unigene Cluster for LIMA1:

    LIM domain and actin binding 1
    Hs.525419  [show with all ESTs]
    Unigene Representative Sequence: NM_001113546
    17 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000552491 ENST00000547825(uc001rwg.4) ENST00000552823 ENST00000394943(uc001rwh.4)
    ENST00000341247(uc001rwj.4 uc001rwk.4 uc010sms.2 uc010smr.2)
    ENST00000552783(uc001rwi.4) ENST00000552909 ENST00000552720 ENST00000549064
    ENST00000552338 ENST00000552008 ENST00000552045 ENST00000551486 ENST00000550611
    ENST00000549681 ENST00000551691 ENST00000550592

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 3): LIMA1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat LIMA1
    8/17 QIAGEN miScript miRNA Assays for microRNAs that regulate LIMA1 (see all 17):
    hsa-miR-106a hsa-miR-938 hsa-miR-216b hsa-miR-519a hsa-miR-93 hsa-miR-526b* hsa-miR-548c-3p hsa-miR-17
    SwitchGear 3'UTR luciferase reporter plasmidLIMA1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LIMA1 (see all 4)
    OriGene shRNA RFP: LIMA1
    OriGene siRNA: LIMA1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LIMA1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): LIMA1 (NM_001113547)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for LIMA1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LIMA1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LIMA1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat LIMA1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LIMA1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LIMA1

    Additional cDNA sequence: 

    AB209512.1 AF157325.1 AF198454.1 AF198455.1 AF218025.1 AK000057.1 AK000335.1 AK000372.1 
    AK023649.1 AK096172.1 AK222971.1 AK297766.1 AK314447.1 AL136911.1 BC001247.1 BC010664.1 
    BC110815.1 BC136763.1 BC144402.1 BC144403.1 

    15 DOTS entries:

    DT.100819043  DT.92456287  DT.86845452  DT.100819042  DT.95245153  DT.121130288  DT.92051769  DT.95196924 
    DT.121130266  DT.40189444  DT.75175098  DT.100819045  DT.102826445  DT.75147778  DT.91820351 

    24/359 AceView cDNA sequences (see all 359):

    CA447584 AA709389 AA732369 AA772616 CA413573 AF198455 AA552115 AW051405 
    AI095661 AA724868 AA553659 BQ694787 AI241322 N27847 AK000335 CN483889 
    BF197289 AI867204 CB130547 AI081288 BC001247 AI806874 AA635572 AA593109 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for LIMA1 (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c · 14d ·
    SP1:                    -                 -     -                                               -           -                 -                                 
    SP2:                    -                 -     -                                               -           -                 -                                 
    SP3:                                                                                            -           -                 -                                 
    SP4:                                                                                            -           -                 -                                 
    SP5:                                      -     -                                                                                                               

    ExUns: 14e
    SP1:      
    SP2:      
    SP3:      
    SP4:      
    SP5:      


    ECgene alternative splicing isoforms for LIMA1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    LIMA1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AAATGTAATT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See LIMA1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for LIMA1

    SOURCE GeneReport for Unigene cluster: Hs.525419

    UniProtKB/Swiss-Prot: LIMA1_HUMAN, Q9UHB6
    Tissue specificity: Highly expressed in placenta, kidney, pancreas, prostate, ovary, spleen and heart. Also detected in
    lung, liver, brain, skeletal muscle, thymus, testis and intestine. Not detected in leukocytes. Isoform Beta expressed
    generally at very low levels. Isoform Alpha abundant in epithelial cells from mammary gland, prostate and in normal
    oral keratinocytes. Low levels in aortic endothelial cells and dermal fibroblasts. Not detectable in myocardium

        SABiosciences Custom PCR Arrays for LIMA1
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LIMA1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat LIMA1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LIMA1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LIMA1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LIMA1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for LIMA1 gene from 9/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lima11 , 5 LIM domain and actin binding 11, 5 80.1(n)1
    76.73(a)1
      15 (56.13 cM)5
    659701  NM_001113545.11  NP_001107017.11 
     997784705 
    chicken
    (Gallus gallus)
    Aves LIMA11 LIM domain and actin binding 1 66.8(n)
    60.08(a)
      426878  XM_424485.2  XP_424485.2 
    lizard
    (Anolis carolinensis)
    Reptilia LIMA16
    --
    53(a)
    1 ↔ 1
    2(91497040-91564259)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.247802 Xenopus laevis transcribed sequence with weak similarity more 75.9(n)    CA972760.1 
    zebrafish
    (Danio rerio)
    Actinopterygii AF307846.12   -- 76.01(n)   64000  AF307846.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG335216
    --
    7(a)
    possible ortholog
    4(1206399-1213320)
    worm
    (Caenorhabditis elegans)
    Secernentea tag-2736
    Temporarily Assigned Gene name family member (tag-...
    8(a)
    possible ortholog
    IV(14487059-14505139)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G399006
    AT3G557706
    (see all 6)
    LIM domain-containing protein
    GATA type zinc finger transcription factor-like pr...
    (see all 6)
    22(a)
    20(a)
    (see all 6)
    many ↔ many
    many ↔ many
    (see all 6)
    2(16658656-16660437)
    3(20703222-20705320)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 6)
    OsLIM - LIM domain protein, putative actin-binding...
    OsWLIM2 - LIM domain protein, putative actin-bindi...
    (see all 6)
    3(a)
    25(a)
    (see all 6)
    many ↔ many
    many ↔ many
    (see all 6)
    6(7132790-7139004)
    3(8796786-8798774)


    ENSEMBL Gene Tree for LIMA1 (if available)
    TreeFam Gene Tree for LIMA1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for LIMA1 gene
    LIMD22  
    1 SIMAP similar gene for LIMA1 using alignment to 8 protein entries:     LIMA1_HUMAN (see all proteins):
    LIMD2

    LIMA1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1646 NCBI SNPs in LIMA1 are shown (see all 1646    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs758067021,2
    --47602945(+) CAACAA/GATGTA 4 -- ut312Minor allele frequency- G:0.08CSA WA 120
    rs95881,2
    C--47603088(+) AATTAG/TTGTCT 4 -- ut31 ese32Minor allele frequency- T:0.00MN NA 186
    rs760203741,2
    --47603196(+) TTGCTC/GTAACA 4 -- ut310--------
    rs740900941,2
    C,F,--47603281(+) TATCAC/TCAGAA 4 -- ut313Minor allele frequency- T:0.05WA CSA 122
    rs31841221,2
    C,F,A,H,--47603310(-) TTTACT/CGTACT 4 -- ut31 ese327Minor allele frequency- C:0.24MN NA NS EA WA 2856
    rs37943121,2
    C,H,--47603597(+) CTGTGC/TCCTTT 4 -- ut31 ese34Minor allele frequency- T:0.00NS EA 420
    rs785935061,2
    F,--47608144(+) AGAACT/AAATGA 4 -- int11Minor allele frequency- A:0.04WA 118
    rs124244081,2
    C,H--47608278(+) GCTCAG/AAAAGG 4 -- int1 trp35Minor allele frequency- A:0.00NS EA NA 502
    rs781145771,2
    F,--47608451(+) GCAACA/GTAGAG 4 -- int11Minor allele frequency- G:0.04WA 118
    rs1114511001,2
    C,--47609326(+) GGTCGG/CGGGGG 4 -- int12Minor allele frequency- C:0.15NA 122

    HapMap Linkage Disequilibrium report for LIMA1 (50569563 - 50677353 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for LIMA1: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LIMA1
    DNA2.0 Custom Variant and Variant Library Synthesis for LIMA1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    LIMA1 for disorders           About GeneDecksing

    OMIM gene information: 608364    OMIM disorders: --

    6 diseases for LIMA1:    About MalaCards
    breast carcinoma    prostate cancer    breast cancer    adenoma
    carcinoma    prostatitis

    2 Novoseek disease relationships for LIMA1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cancer 17.5 3 10618726 (1), 11179679 (1)
    tumors 4.24 1 12566430 (1)


    Export disorders for LIMA1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for LIMA1 gene, integrated from 9 sources (see all 53):
    (articles sorted by number of sources associating them with LIMA1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. EPLIN regulates actin dynamics by cross-linking and stabilizing filaments. (PubMed id 12566430)1, 2, 3, 9 Maul R.S.... Chang D.D. (2003)
    2. EPLIN, epithelial protein lost in neoplasm. (PubMed id 10618726)1, 2, 3, 9 Maul R.S. and Chang D.D. (1999)
    3. Characterization of the human EPLIN (Epithelial protein lost in neoplasm) gene reveals distinct promoters for the two EPLIN isoforms. (PubMed id 10806352)1, 2, 3, 9 Chen S.... Chang D.D. (2000)
    4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    5. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)1, 2 Wan D....Gu J. (2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    8. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
    9. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PubMed id 10931946)1, 2 Hu R.-M.... Chen J.-L. (2000)
    10. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614)1, 2 Simpson J.C.... Wiemann S. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 51474 HGNC: 24636 AceView: EPLIN Ensembl:ENSG00000050405 euGenes: HUgn51474
    ECgene: LIMA1 H-InvDB: LIMA1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for LIMA1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for LIMA1 gene:
    Search GeneIP for patents involving LIMA1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for LIMA1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LIMA1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LIMA1  
     OriGene Protein Over-expression Lysate for LIMA1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for LIMA1   OriGene 3'-UTR Clone for LIMA1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LIMA1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for LIMA1   OriGene Custom Protein Services for LIMA1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat LIMA1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LIMA1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LIMA1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LIMA1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LIMA1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LIMA1
     GenScript Custom Purified and Recombinant Proteins Services for LIMA1 GenScript cDNA clones with any tag delivered in your preferred vector for LIMA1
     GenScript Custom Assay Services for LIMA1 GenScript Custom Superior Antibodies Services for LIMA1
     GenScript Custom overexpressing Cell Line Services for LIMA1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in LIMA1 promoter
     Search Chromatin IP Primers for LIMA1
     RT2 qPCR Primer Assay in human, mouse, rat LIMA1
     Search GNC Networks for LIMA1
     SABiosciences Custom PCR Arrays for LIMA1
     Search Tocris compounds for LIMA1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     LIMA1 antibodies
     LIMA1 proteins
     LIMA1 lysates
     Search for Antibodies for LIMA1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for LIMA1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     LIMA1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for LIMA1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LIMA1
     SwitchGear 3'UTR luciferase reporter plasmids for LIMA1
     SwitchGear Promoter luciferase reporter plasmids for LIMA1
     Search ThermoFisher Antibodies for LIMA1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LIMA1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      LIMA1 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4