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Aliases & Descriptions for LIG3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.5.1.1 3 LIG2 2
Descriptions DNA ligase III 3 Polydeoxyribonucleotide synthase [ATP] 3 3 ligase II, DNA, ATP-dependent 1 , 2 ligase III, DNA, ATP-dependent 2 polydeoxyribonucleotide synthase 2
Search outside databases for aliases for LIG3 genePrevious GC identifers: GC17P033077 GC17P035343 GC17P033453
Summaries for LIG3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LIG3 : This gene is a member of the DNA ligase family. Each member of this family encodes a protein thatcatalyzes the joining of DNA ends but they each have a distinct role in DNA metabolism. Theprotein encoded by this gene is involved in excision repair and is located in both themitochondria and nucleus, with translation initiation from the upstream start codon allowing fortransport to the mitochondria and translation initiation from a downstream start codon allowingfor transport to the nucleus. Additionally, alternate transcriptional splice variants, encodingdifferent isoforms, have been characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: DNLI3_HUMAN, P49916 Function : Interacts with DNA-repair protein XRCC1 and can correct defective DNA strand-break repairand sister chromatid exchange following treatment with ionizing radiation and alkylating agents
Genomic Location for LIG3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LIG3 gene Entrez Gene cytogenetic band: 17q11.2-q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q11.2-q12 LIG3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P030331:
(about GC identifiers )
Start:
30,331,651 bp from pter
End:
30,356,201 bp from pter
Size:
24,551 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010799.14 Proteins for LIG3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DNLI3_HUMAN, P49916 (See
protein sequence )Recommended Name: DNA ligase 3 Size : 922 amino acids; 102691 Da
Cofactor : Magnesium (By similarity)
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1IMO (3D)
 1IN1 (3D)
 1UW0 (3D)
 
Secondary accessions : Q16714Alternative splicing : 2 isoforms : P49916-1 P49916-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002302.2 NP_039269.2 ENSEMBL proteins: ENSP00000367787 ENSP00000262327 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for LIG3: Assays for LIG3:
Protein
Domains/ Families for LIG3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P49916 ProtoNet protein and cluster: P49916
3 Blocks protein families : IPB001357 BRCT domain IPB001510 Zn-finger IPB012308 DNA ligase UniProtKB/Swiss-Prot: DNLI3_HUMAN, P49916 Similarity : Belongs to the ATP-dependent DNA ligase familySimilarity : Contains 1 BRCT domainSimilarity : Contains 1 PARP-type zinc finger
Gene Function for LIG3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002311 Applied Biosystems Silencer ® siRNAs for LIG3 Sigma-Aldrich siRNA and siRNA Panels for LIG3 Sigma-Aldrich shRNA Panels and shRNA for LIG3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002311                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002311                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_002311  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_013975 UniProtKB/Swiss-Prot: DNLI3_HUMAN, P49916 Function : Interacts with DNA-repair protein XRCC1 and can correct defective DNA strand-break repairand sister chromatid exchange following treatment with ionizing radiation and alkylating agents Catalytic activity : ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate +(deoxyribonucleotide)(n+m) Enzyme Number (IUBMB): EC 6.5.1.1
Genatlas biochemistry entry for LIG3 :DNA ligase III,ATP-dependent,103kDa,complexing with LIG3,involved in DNA replication,recombinationand DNA repair,highly expressed in testes
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Lig3) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
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Pathways & Interactions for LIG3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/37 Interacting proteins for LIG3 (P49916 1 , 2 ENSP00000367787 3 ) via UniProtKB, MINT, and/or STRING (see all 37
)About this table 5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
):
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Drugs & Compounds for LIG3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LIG3 3 Novoseek chemical compound relationships for LIG3 gene
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Transcripts for LIG3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002311 Sigma-Aldrich siRNA and siRNA Panels for LIG3 Sigma-Aldrich shRNA Panels and shRNA for LIG3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002311 NM_013975
REFSEQ mRNAs for LIG3 gene (2 alternative transcripts): NM_002311.3 NM_013975.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002311 NM_013975
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002311                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002311                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_002311  
Additional cDNA sequence: AK127668.1 AK300363.1 AK308407.1 BC009026.1 BC068005.1 CR616389.1 U40671.1 X84740.1
15 DOTS entries : DT.313674 DT.95088103 DT.100784860 DT.100784857 DT.120964172 DT.91749274 DT.95358707 DT.120964053 DT.91704022 DT.100784856 DT.120964009 DT.120964125 DT.91824684 DT.91837080 DT.100008759
24/150 AceView cDNA sequences (see all 150
):BX280780 BM927151 BF881950 BG766643 CB127294 AA953450 U40671 BQ691150 BX470676 AL528176 BQ082820 AW236716 BU171391 NM_013975 BM726768 CR616389 CA426477 AK125853 AW950125 BQ024078 AI682152 BG230655 BC009026 BP873049
highest scoring ESTs for LIG3 :X84740 AA029240 AA029241 AA149292 AA149406 AA531535 AA742510 AA872458 AA939162 AA953450
Unigene Cluster for LIG3: Ligase III, DNA, ATP-dependent Hs.100299 [show with all ESTs ] Unigene Representative Sequence: NM_013975 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for LIG3 (see all 8
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ SP1 :             -       -       -                 -     -         SP2 :             -       -       -                 -     -         SP3 :         -   -   -       -       -                             SP4 :                                                     SP5 :                                                    
ExUns: 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 SP1 :           -     SP2 :               SP3 :               SP4 :               SP5 :              
About this scheme ECgene alternative splicing isoforms for LIG3 2 Ensembl transcripts including schematic representations : ENST00000378526
ENST00000262327
Expression for LIG3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LIG3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LIG3 1 / 2 / 3
8 probe-sets matching LIG3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGAAAGAAAASOURCE GeneReport for Unigene cluster: Hs.100299 Expression variation in blood from EXPOLDB for LIG3
UniProtKB/Swiss-Prot: DNLI3_HUMAN, P49916 Tissue specificity : Testis, thymus, prostate and heart
Orthologs for LIG3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LIG3 gene from 5/11 species (see all 11
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
LIG31
--
ligase III, DNA, ATP-dependent
89.84(n) 91.4(a)
491145 XM_548265.2 XP_548265.2
chimpanzee (Pan troglodytes)
LIG31
--
ligase III, DNA, ATP-dependent
99.78(n) 99.78(a)
454581 XM_511409.2 XP_511409.2
cow (Bos taurus)
LIG31
--
ligase III, DNA, ATP-dependent
89.18(n) 88.78(a)
514719 NM_001038107.1 NP_001033196.1
rat (Rattus norvegicus)
Lig31
--
ligase III, DNA, ATP-dependent
88.14(n) 90.21(a)
303369 NM_001012011.1 NP_001012011.1
mouse (Mus musculus)
Lig31 , 5
11 (48.00 cM) 5
ligase III, DNA, ATP-dependent1, 5
87.64(n) 1 88.4(a) 1
16882 1 NM_010716.2 1 NP_034846.2 1 AA409796 5 AK010719 5 (see all 24 )
About this table Species with no ortholog for LIG3 ENSEMBL Gene Tree for LIG3 Paralogs for LIG3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LIG3 gene LIG4 2 LIG1 2
SNPs/Variants for LIG3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LIG3 (up to first 250kb)
Disorders & Mutations for LIG3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600940 2 Novoseek disease relationships for LIG3 gene
About this table Human Gene Mutation Database : LIG3 Genetic Association Database: LIG3 Human Genome Epidemiology Navigator: LIG3 (13 documents)
Medical News for LIG3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LIG3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/99 PubMed articles for LIG3 gene (see all 99
): Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination. (PubMed id 7760816) 1, 2, 3, 4 Wei Y.-F.... Lindahl T. (1995) Mammalian DNA ligase III: molecular cloning, chromosomal localization, and expression in spermatocytes undergoing meiotic recombination. (PubMed id 7565692) 1, 3, 4 Chen J.... Husain I. (1995) Polymorphisms of DNA repair genes and risk of non-small cell lung cancer. (PubMed id 16195237) 3, 6 Zienolddiny S....Haugen A. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Identification of genetic variants in base excision repair pathway and their associations with risk of esophageal squamous cell carcinoma. (PubMed id 15205355) 3, 6 Hao B....He F. (2004) Expression, purification, and biophysical characterization of the BRCT domain of human DNA ligase IIIalpha. (PubMed id 11281714) 3, 4 Thornton K.H.... Cosman M. (2001) XRCC1 protein interacts with one of two distinct forms of DNA ligase III. (PubMed id 9136882) 1, 3 Nash R.A....Lindahl T. (1997) An interaction between the mammalian DNA repair protein XRCC1 and DNA ligase III. (PubMed id 8264637) 1, 3 Caldecott K.W....Thompson L.H. (1994) A novel interaction between DNA ligase III and DNA polymerase gamma plays an essential role in mitochondrial DNA stability. (PubMed id 17054425) 1, 3 De A. and Campbell C. (2007) Two DNA-binding and nick recognition modules in human DNA ligase III. (PubMed id 18238776) 1, 3 Cotner-Gohara E....Ellenberger T. (2008)
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Genome Databases showing LIG3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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(According to HUGE )
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Specialized Databases showing LIG3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LIG3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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