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Aliases for LHFPL3-AS1 Gene

Subcategory (RNA class) for LHFPL3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LHFPL3-AS1 Gene

  • LHFPL3 Antisense RNA 1 2 3 5
  • LHFPL3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for LHFPL3-AS1 Gene

Previous GeneCards Identifiers for LHFPL3-AS1 Gene

  • GC07M104381

Summaries for LHFPL3-AS1 Gene

GeneCards Summary for LHFPL3-AS1 Gene

LHFPL3-AS1 (LHFPL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LHFPL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LHFPL3-AS1 Gene

Genomics for LHFPL3-AS1 Gene

Regulatory Elements for LHFPL3-AS1 Gene

Enhancers for LHFPL3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H104857 0.6 ENCODE 10.1 -53.8 -53802 0 EED IKZF1 ELF1 RUNX3 IKZF2 RELA LHFPL3-AS1 GC07M104825 RN7SL8P
GH07H104772 0.5 ENCODE 11 +31.4 31400 1 POLR2A MAX CTBP2 LHFPL3-AS1 LHFPL3 LOC105375436
GH07H104755 0.3 FANTOM5 10.4 +48.8 48799 0 LHFPL3-AS1 LOC105375436
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LHFPL3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for LHFPL3-AS1 Gene

Chromosome:
7
Start:
104,738,597 bp from pter
End:
104,804,107 bp from pter
Size:
65,511 bases
Orientation:
Minus strand

Genomic View for LHFPL3-AS1 Gene

Genes around LHFPL3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LHFPL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LHFPL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LHFPL3-AS1 Gene

Proteins for LHFPL3-AS1 Gene

Post-translational modifications for LHFPL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LHFPL3-AS1 Gene

Domains & Families for LHFPL3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LHFPL3-AS1 Gene

Function for LHFPL3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LHFPL3-AS1 Gene

Localization for LHFPL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LHFPL3-AS1 Gene

Pathways & Interactions for LHFPL3-AS1 Gene

SuperPathways for LHFPL3-AS1 Gene

No Data Available

Interacting Proteins for LHFPL3-AS1 Gene

Gene Ontology (GO) - Biological Process for LHFPL3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LHFPL3-AS1 Gene

Drugs & Compounds for LHFPL3-AS1 Gene

No Compound Related Data Available

Transcripts for LHFPL3-AS1 Gene

mRNA/cDNA for LHFPL3-AS1 Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LHFPL3-AS1 Gene

LHFPL3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LHFPL3-AS1 Gene

No ASD Table

Relevant External Links for LHFPL3-AS1 Gene

GeneLoc Exon Structure for
LHFPL3-AS1
ECgene alternative splicing isoforms for
LHFPL3-AS1

Expression for LHFPL3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LHFPL3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LHFPL3-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x20.4) and Skin - Not Sun Exposed (Suprapubic) (x8.1).

SOURCE GeneReport for Unigene cluster for LHFPL3-AS1 Gene:

Hs.658835
genes like me logo Genes that share expression patterns with LHFPL3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LHFPL3-AS1 Gene

Orthologs for LHFPL3-AS1 Gene

Evolution for LHFPL3-AS1 Gene

ENSEMBL:
Gene Tree for LHFPL3-AS1 (if available)
TreeFam:
Gene Tree for LHFPL3-AS1 (if available)

No data available for Orthologs for LHFPL3-AS1 Gene

Paralogs for LHFPL3-AS1 Gene

No data available for Paralogs for LHFPL3-AS1 Gene

Variants for LHFPL3-AS1 Gene

Sequence variations from dbSNP and Humsavar for LHFPL3-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000633373 -- 104,796,992(+) CAAAC(C/T)TTGCA intron-variant
rs1000962846 -- 104,796,686(+) TCTTA(A/G)AAAAC intron-variant, nc-transcript-variant
rs1001002661 -- 104,801,059(+) TGTAT(G/T)CAGGG intron-variant
rs1001307937 -- 104,800,025(+) AGTGC(C/T)AGATC intron-variant, nc-transcript-variant
rs1001456501 -- 104,801,366(+) CAGAT(A/G)AGCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LHFPL3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv425n21 CNV gain 19592680
dgv6545n100 CNV gain 25217958
esv2660132 CNV deletion 23128226
esv3614403 CNV loss 21293372
nsv1019625 CNV gain 25217958
nsv436902 CNV insertion 17901297
nsv5887 CNV deletion 18451855
nsv831086 CNV loss 17160897

Relevant External Links for LHFPL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LHFPL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LHFPL3-AS1 Gene

Disorders for LHFPL3-AS1 Gene

Relevant External Links for LHFPL3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LHFPL3-AS1

No disorders were found for LHFPL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LHFPL3-AS1 Gene

Publications for LHFPL3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LHFPL3-AS1 Gene

Sources for LHFPL3-AS1 Gene

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