 |
 | Services
| |
 |
Aliases & Descriptions for LCP1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CP64 1, 2 | | DKFZp781A23186 2 | | FLJ25423 2 | | FLJ26114 2 | | FLJ39956 2 | | L-PLASTIN 1, 2 | | L-plastin 2, 3 | | LC64P 1, 2, 3 | | LCP-1 3 | | LPL 2 | | OTTHUMP00000018362 2 | | PLS2 1, 2, 3 |
| | | Descriptions |
|---|
| L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P) 2 | | Lymphocyte cytosolic protein 1 3 | | Lymphocyte cytosolic protein-1 (plasmin) 2 | | bA139H14.1 (lymphocyte cytosolic protein 1 (L-plastin)) 2 | | lymphocyte cytosolic protein 1 (L-plastin) 2 | | plastin 2 2 |
|
| | Search outside databases for aliases for LCP1 genePrevious GC identifers: GC13M044700 GC13M040687 GC13M045636 GC13M044498 |
Summaries for LCP1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for LCP1: Plastins are a family of actin-binding proteins that are conserved throughout eukaryote evolution and expressed in most tissues of higher eukaryotes. In humans, two ubiquitous plastin isoforms (L and T) have been identified. Plastin 1 (otherwise known as Fimbrin) is a third distinct plastin isoform which is specifically expressed at high levels in the small intestine. The L isoform is expressed only in hemopoietic cell lineages, while the T isoform has been found in all other normal cells of solid tissues that have replicative potential (fibroblasts, endothelial cells, epithelial cells, melanocytes, etc.). However, L-plastin has been found in many types of malignant human cells of non-hemopoietic origin suggesting that its expression is induced accompanying tumorigenesis in solid tissues. [provided by RefSeq] UniProtKB/Swiss-Prot: PLSL_HUMAN, P13796Function: Actin-binding protein found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodiaGene Wiki entry for LCP1 |
Genomic Location for LCP1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the LCP1 gene 
Entrez Gene cytogenetic band: 13q14.3 Ensembl cytogenetic band: 13q14.12 HGNC cytogenetic band: 13q14.3LCP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13M045598:
(about GC identifiers)
Start:
|
45,598,060 bp from pter |
End:
|
45,683,484 bp from pter |
Size:
|
85,425 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000013.9 NT_024524.13
| Proteins for LCP1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PLSL_HUMAN, P13796 (See
protein sequence)Recommended Name: Plastin-2 Size: 627 amino acids; 70289 Da
Subunit: Monomer
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :2D85 (3D)
 
Secondary accessions: B2R613Post-translational modifications:
Phosphorylated1
The N-terminus is blocked1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002289.2
ENSEMBL proteins: ENSP00000315757 ENSP00000381581
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for LCP1: Assays for LCP1: | Protein
Domains/ Families for LCP1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P13796
ProtoNet protein and cluster: P13796 2 Blocks protein families: IPB001589 Actin-binding IPB001715 Calponin-like actin-binding
UniProtKB/Swiss-Prot: PLSL_HUMAN, P13796Similarity: Contains 2 actin-binding domainsSimilarity: Contains 4 CH (calponin-homology) domainsSimilarity: Contains 2 EF-hand domains | Gene Function for LCP1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002298
Applied Biosystems Silencer® siRNAs for LCP1
Sigma-Aldrich siRNA for LCP1  Sigma-Aldrich shRNA for LCP1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002298                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002298                                  untagged cDNA clone in CMV expression vector: NM_002298 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002298
UniProtKB/Swiss-Prot: PLSL_HUMAN, P13796Function: Actin-binding protein found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodiaGenatlas biochemistry entry for LCP1:lymphocyte cytosolic protein 1,plastin L,64kDa,actin binding protein,expressed in hemopoietic cells,overexpressed in tumerogenesis,involved in translocation t(3;13)(q27;q14) in B cell non-Hodgkin lymphoma,also involved in other translocations with acute myeloid leukemia3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for LCP1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Interacting proteins for LCP1 (P137961 ENSP000003157573) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- | | GO:0051017 | actin filament bundle formation |
IEA | -- | About this table
|
Drugs & Compounds for LCP1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for LCP1 7 Novoseek chemical compound relationships for LCP1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cytosine |
47.63 |
4 |
12719708 (2), 16179927 (1), 17679557 (1) |
| fmlp |
25.65 |
5 |
14556648 (5) |
| progesterone |
12.40 |
6 |
8012965 (3), 11062740 (1), 8055865 (1) |
| steroid |
5.75 |
8 |
16281503 (3), 9176394 (2), 8012965 (1) |
| calcium |
5.32 |
5 |
8663066 (2), 8461306 (1), 7897227 (1) |
| estradiol |
0.00 |
2 |
8012965 (1), 9176394 (1) |
| superoxide |
0.00 |
3 |
14769871 (1), 17320137 (1), 16391823 (1) |
About this table
|
Transcripts for LCP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002298
Sigma-Aldrich siRNA for LCP1  Sigma-Aldrich shRNA for LCP1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002298 REFSEQ mRNAs for LCP1 gene: NM_002298.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002298               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002298                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002298                                  untagged cDNA clone in CMV expression vector: NM_002298  Additional cDNA sequence: AB208984.1 AK058152.1 AK093568.1 AK097174.1 AK097275.1 AK129625.1 AK223305.1 AK300556.1 AK309009.1 AK312393.1 AY960627.3 BC007673.1 BC010271.1 BC015001.1 BC053839.1 CR593418.1 CR936795.1 J02923.1 M22300.1 M34426.1 24/33 DOTS entries (see all 33
): DT.418819 DT.95226164 DT.95317085 DT.100656064 DT.100656072 DT.100804311 DT.100656067 DT.100031383 DT.101984525 DT.100830729 DT.92464039 DT.120773322 DT.97862431 DT.97817205 DT.101976482 DT.120773270 DT.120773310 DT.120773329 DT.92464082 DT.95317150 DT.97775295 DT.100061002 DT.100656071 DT.100774306 24/713 AceView cDNA sequences (see all 713
):BX361599 AL043695 AW401986 AW467876 CN479414 BQ065013 AU076720 W79358 AA156857 BX443732 BU164563 AI499994 AA707091 AU136291 BQ436063 AW403332 BI093518 BM454253 BM465025 BE858569 BQ229636 BQ433642 BU431561 BM479779
highest scoring ESTs for LCP1:J02923 AA312169 AA346505 AA346507 AK093568 AL601737 AU076720 AU100436 AV759230 AW502859 Unigene Cluster for LCP1: Lymphocyte cytosolic protein 1 (L-plastin) Hs.381099 [show with all ESTs]Unigene Representative Sequence: NM_002298
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for LCP1 (see all 7
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | |
| SP1: | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 19a | · | 19b | · | 19c | |
| SP1: | |   | |   | |   | |
| SP2: | |   | |   | |   | |
| SP3: | |   | |   | |   | |
| SP4: | |   | |   | |   | |
| SP5: | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for LCP1
2 Ensembl transcripts including schematic representations: ENST00000323076
ENST00000398576
|
Expression for LCP1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| LCP1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for LCP1
1 / 2 / 3 3 probe-sets matching LCP1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGGCTCCTCC
SOURCE GeneReport for Unigene cluster: Hs.381099
Expression variation in blood from EXPOLDB for LCP1 UniProtKB/Swiss-Prot: PLSL_HUMAN, P13796Tissue specificity: Restricted to the spleen and other lymph node-containing organs. Expressed in neutrophils, monocytes, B lymphocytes, and myeloid cells |
Orthologs for LCP1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for LCP1 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for LCP1
ENSEMBL Gene Tree for LCP1 | Paralogs for LCP1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for LCP1 gene
- PLS12 PLS32
|
SNPs/Variants for LCP1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for LCP1 (up to first 250kb)
|
Disorders & Mutations for LCP1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 153430
10/14 Novoseek disease relationships for LCP1 gene (see all 14
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| solid tumor |
31.59 |
3 |
8461306 (1), 8012965 (1), 8428952 (1) |
| cancer |
24.30 |
8 |
12843666 (2), 12719708 (1), 8428953 (1), 16287074 (1) (see all 6) |
| fibrosarcoma |
22.43 |
1 |
8428952 (1) |
| ovarian cancer |
21.66 |
3 |
11389068 (2), 10195877 (1) |
| tumors |
21.39 |
12 |
17290393 (2), 11062740 (2), 8548753 (2), 17679557 (1) (see all 9) |
| ovarian carcinoma |
15.21 |
1 |
8428952 (1) |
| colon cancer |
12.77 |
2 |
16287074 (1) |
| breast carcinoma |
3.11 |
1 |
8428952 (1) |
| shock |
0.00 |
2 |
12949081 (1), 15749383 (1) |
| melanoma |
0.00 |
6 |
17290393 (6) |
About this table
1 PharmGKB disease relationship for LCP1 geneAbout this table
|
Medical News for LCP1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for LCP1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/101 PubMed articles for LCP1 gene (see all 101
):- Characterization of interleukin 2 stimulated 65-kilodalton phosphoprotein in human T cells. (PubMed id 2111166)2, 3, 4 Zu Y.... Namba Y. (1990)
- Human plastin genes. Comparative gene structure, chromosome location, and differential expression in normal and neoplastic cells. (PubMed id 8428952)1, 3, 4 Lin C.-S.... Leavitt J. (1993)
- 65-kilodalton protein phosphorylated by interleukin 2 stimulation bears two putative actin-binding sites and two calcium-binding sites. (PubMed id 2252891)1, 3, 4 Zu Y....Namba Y. (1990)
- Correction of the N-terminal sequences of the human plastin isoforms by using anchored polymerase chain reaction: identification of a potential calcium-binding domain. (PubMed id 2378651)1, 3, 4 Lin C.-S.... Leavitt J. (1990)
- Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)3, 4 Rush J.... Comb M.J. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Purification and characterization of a cytosolic 65-kilodalton phosphoprotein in human leukocytes whose phosphorylation is augmented by stimulation with interleukin 1. (PubMed id 3261603)3, 4 Matsushima K.... Copeland T.D. (1988)
- Molecular cloning and characterization of plastin, a human leukocyte protein expressed in transformed human fibroblasts. (PubMed id 3211125)3, 4 Lin C.-S.... Leavitt J. (1988)
- Phosphorylation of ectopically expressed L-plastin enhances invasiveness of human melanoma cells. (PubMed id 17290393)1, 3 Klemke M....Samstag Y. (2007)
|
Search for LCP1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing LCP1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing LCP1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing LCP1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for LCP1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for LCP1:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for LCP1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|