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Aliases for LCN10 Gene

Aliases for LCN10 Gene

  • Lipocalin 10 2 3 5

External Ids for LCN10 Gene

Previous GeneCards Identifiers for LCN10 Gene

  • GC00U915587
  • GC09M136899
  • GC09M138753
  • GC09M139632
  • GC09M109091

Summaries for LCN10 Gene

Entrez Gene Summary for LCN10 Gene

  • Members of the lipocalin family, such as LCN10, have a common structure consisting of an 8-stranded antiparallel beta-barrel that forms a cup-shaped ligand-binding pocket or calyx. Lipocalins generally bind small hydrophobic ligands and transport them to specific cells (Suzuki et al., 2004 [PubMed 15363845]).[supplied by OMIM, Aug 2009]

GeneCards Summary for LCN10 Gene

LCN10 (Lipocalin 10) is a Protein Coding gene.

UniProtKB/Swiss-Prot for LCN10 Gene

  • May play a role in male fertility. May act as a retinoid carrier protein within the epididymis.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LCN10 Gene

Genomics for LCN10 Gene

Regulatory Elements for LCN10 Gene

Enhancers for LCN10 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LCN10 on UCSC Golden Path with GeneCards custom track

Genomic Location for LCN10 Gene

Chromosome:
9
Start:
136,738,167 bp from pter
End:
136,743,356 bp from pter
Size:
5,190 bases
Orientation:
Minus strand

Genomic View for LCN10 Gene

Genes around LCN10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LCN10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LCN10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LCN10 Gene

Proteins for LCN10 Gene

  • Protein details for LCN10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6JVE6-LCN10_HUMAN
    Recommended name:
    Epididymal-specific lipocalin-10
    Protein Accession:
    Q6JVE6
    Secondary Accessions:
    • A2RUU3
    • B0QZ79

    Protein attributes for LCN10 Gene

    Size:
    187 amino acids
    Molecular mass:
    20759 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LCN10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LCN10 Gene

Proteomics data for LCN10 Gene at MOPED

Post-translational modifications for LCN10 Gene

Other Protein References for LCN10 Gene

No data available for DME Specific Peptides for LCN10 Gene

Domains & Families for LCN10 Gene

Gene Families for LCN10 Gene

Protein Domains for LCN10 Gene

Suggested Antigen Peptide Sequences for LCN10 Gene

Graphical View of Domain Structure for InterPro Entry

Q6JVE6

UniProtKB/Swiss-Prot:

LCN10_HUMAN :
  • Belongs to the calycin superfamily. Lipocalin family.
Family:
  • Belongs to the calycin superfamily. Lipocalin family.
genes like me logo Genes that share domains with LCN10: view

Function for LCN10 Gene

Molecular function for LCN10 Gene

UniProtKB/Swiss-Prot Function:
May play a role in male fertility. May act as a retinoid carrier protein within the epididymis.
genes like me logo Genes that share phenotypes with LCN10: view

Animal Model Products

  • Taconic Biosciences Mouse Models for LCN10

miRNA for LCN10 Gene

miRTarBase miRNAs that target LCN10

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LCN10 Gene

Localization for LCN10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LCN10 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LCN10 Gene COMPARTMENTS Subcellular localization image for LCN10 gene
Compartment Confidence
extracellular 5
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for LCN10 Gene

Pathways & Interactions for LCN10 Gene

SuperPathways for LCN10 Gene

No Data Available

Interacting Proteins for LCN10 Gene

Gene Ontology (GO) - Biological Process for LCN10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LCN10 Gene

Drugs & Compounds for LCN10 Gene

No Compound Related Data Available

Transcripts for LCN10 Gene

Unigene Clusters for LCN10 Gene

Lipocalin 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LCN10 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c · 3d · 3e · 3f · 3g ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b · 12c · 12d ·
SP1: - -
SP2: - - - - -
SP3: - - -
SP4: - - - -
SP5: - - - - - -
SP6: - - -
SP7: - - - -
SP8: - - - -
SP9: - -
SP10: -
SP11: - - -
SP12:
SP13: - - -

ExUns: 12e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:

Relevant External Links for LCN10 Gene

GeneLoc Exon Structure for
LCN10
ECgene alternative splicing isoforms for
LCN10

Expression for LCN10 Gene

mRNA expression in normal human tissues for LCN10 Gene

mRNA differential expression in normal tissues according to GTEx for LCN10 Gene

This gene is overexpressed in Cervix - Endocervix (x5.2), Fallopian Tube (x4.7), Heart - Left Ventricle (x4.6), and Uterus (x4.2).

SOURCE GeneReport for Unigene cluster for LCN10 Gene Hs.98132

genes like me logo Genes that share expression patterns with LCN10: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LCN10 Gene

Orthologs for LCN10 Gene

This gene was present in the common ancestor of mammals.

Orthologs for LCN10 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia LCN10 35
  • 74.69 (n)
  • 64.81 (a)
LCN10 36
  • 66 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lcn10 35
  • 77.11 (n)
  • 71.69 (a)
Lcn10 16
Lcn10 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lcn10 35
  • 78.04 (n)
  • 71.86 (a)
cow
(Bos Taurus)
Mammalia LCN10 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LCN10 36
  • 40 (a)
OneToOne
Species with no ortholog for LCN10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LCN10 Gene

ENSEMBL:
Gene Tree for LCN10 (if available)
TreeFam:
Gene Tree for LCN10 (if available)

Paralogs for LCN10 Gene

No data available for Paralogs for LCN10 Gene

Variants for LCN10 Gene

Sequence variations from dbSNP and Humsavar for LCN10 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs7848807 -- 136,740,978(+) GTTCC(C/T)GGATG intron-variant
rs7862031 -- 136,741,770(+) ACGGT(C/T)CTTGT intron-variant
rs114417543 -- 136,739,719(+) GCATC(A/G)CCTGG intron-variant
rs114525382 -- 136,739,538(+) GGATG(C/G)TGTGT reference, missense
rs115170022 -- 136,739,544(+) TGTGT(A/G)TACGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for LCN10 Gene

Variant ID Type Subtype PubMed ID
dgv8385n71 CNV Loss 21882294
dgv2426e1 CNV Complex 17122850
nsv469918 CNV Loss 18288195
dgv8400n71 CNV Loss 21882294
nsv894386 CNV Loss 21882294
nsv894387 CNV Gain 21882294
nsv8579 CNV Gain 18304495
dgv8404n71 CNV Loss 21882294
dgv2427e1 CNV Complex 17122850
esv2422220 CNV Deletion 17116639
dgv8408n71 CNV Loss 21882294
dgv8410n71 CNV Loss 21882294
dgv8411n71 CNV Loss 21882294
dgv8412n71 CNV Loss 21882294
dgv8413n71 CNV Loss 21882294
dgv8414n71 CNV Loss 21882294
dgv8415n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv6769 CNV Insertion 18451855
esv2657925 CNV Deletion 23128226
nsv818738 CNV Gain 17921354

Variation tolerance for LCN10 Gene

Residual Variation Intolerance Score: 73.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.89; 67.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LCN10 Gene

HapMap Linkage Disequilibrium report
LCN10
Human Gene Mutation Database (HGMD)
LCN10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LCN10 Gene

Disorders for LCN10 Gene

Relevant External Links for LCN10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LCN10

No disorders were found for LCN10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LCN10 Gene

Publications for LCN10 Gene

  1. Molecular evolution of epididymal lipocalin genes localized on mouse chromosome 2. (PMID: 15363845) Suzuki K. … Orgebin-Crist M.-C. (Gene 2004) 2 3 4 23 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LCN10 Gene

Sources for LCN10 Gene

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