LCK Gene
protein-coding GIFtS : 76
GCID: GC01 P032716
lymphocyte-specific protein tyrosine kinase
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Aliasesfor LCK gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Lymphocyte-Specific Protein Tyrosine Kinase 1 2 Pp58lck1 Leukocyte C-Terminal Src Kinase2 3 Proto-Oncogene Tyrosine-Protein Kinase LCK2 Lymphocyte Cell-Specific Protein-Tyrosine Kinase2 3 T-Lymphocyte Specific Protein Tyrosine Kinase P56lck2 T Cell-Specific Protein-Tyrosine Kinase2 3 Tyrosine-Protein Kinase Lck2 LSK2 3 P56-LCK1 EC 2.7.10.23 8 Protein YT163 YT162 Proto-Oncogene Lck3 P56(LSTRA) Protein-Tyrosine Kinase2 EC 2.7.108 P56lck1
Export aliases for LCK gene to outside databases Previous GC identifers: GC01U990096 GC01P032143 GC01P032219 GC01P032386 GC01P032489 GC01P030833
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Summariesfor LCK gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for LCK : This gene is a member of the Src family of protein tyrosine kinases (PTKs). The encoded protein is a key signaling molecule in the selection and maturation of developing T-cells. It contains N-terminal sites for myristylation and palmitylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. The protein localizes to the plasma membrane and pericentrosomal vesicles, and binds to cell surface receptors, including CD4 and CD8, and other signaling molecules. Multiple alternatively spliced variants, encoding the same protein, have been described. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: LCK_HUMAN, P06239 Function : Non-receptor tyrosine-protein kinase that plays an essential role in the selection and maturation ofdeveloping T-cells in the thymus and in the function of mature T-cells. Plays a key role in T-cell antigen receptor (TCR)-linked signal transduction pathways. Constitutively associated with the cytoplasmic portions of the CD4 and CD8 surface receptors. Association of the TCR with a peptide antigen-bound MHC complex facilitates the interaction of CD4 and CD8 with MHC class II and class I molecules, respectively, thereby recruiting the associated LCK protein to the vicinity of the TCR/CD3 complex. LCK then phosphorylates tyrosines residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the cytoplasmic tails of the TCR-gamma chains and CD3 subunits, initiating the TCR/CD3 signaling pathway. Once stimulated, the TCR recruits the tyrosine kinase ZAP70, that becomes phosphorylated and activated by LCK. Following this, a large number of signaling molecules are recruited, ultimately leading to lymphokine production. LCK also contributes to signaling by other receptor molecules. Associates directly with the cytoplasmic tail of CD2, which leads to hyperphosphorylation and activation of LCK. Also plays a role in the IL2 receptor-linked signaling pathway that controls the T-cell proliferative response. Binding of IL2 to its receptor results in increased activity of LCK. Is expressed at all stages of thymocyte development and is required for the regulation of maturation events that are governed by both pre-TCR and mature alpha beta TCR. Phosphorylates other substrates including RUNX3, PTK2B/PYK2, the microtubule-associated protein MAPT, RHOH or TYROBP summary
for LCK : Src kinases consist of eight non-receptor tyrosine kinases (Src, Fyn, Yes, Lck, Lyn, Hck, Fgr and Blk) thatinteract with the intracellular domains of growth factor/cytokine receptors, GPCRs and integrins. Members ofthe Src kinase family have a very similar domain structure with a high degree of homology in the SH1(catalytic), linker, SH2 (p-Tyr binding), SH3 (protein-protein interaction) and SH4 (membrane association)domains. c-Src, Fyn and Yes are ubiquitously expressed, although high levels of c-Src are found inplatelets, neural tissue and osteoclasts. For c-Src, autophosphorylation of Tyr418 and dephosphorylation ofTyr530 is required to switch the kinase from the inactive closed formation to the active open formation.c-Src can be inactivated by two kinases, c-Src kinase (CSK) and CSK homologous kinase (CHK), both of whichphosphorylate Tyr530 of c-Src. The activity of the Src kinase family can also be regulated by phosphatases(e.g. SHP1), binding to adaptor proteins (e.g. Cbp) and proteasomal degradation. Src kinases are keyupstream mediators of both the PI 3-K and MAPK signaling pathways, and have been shown to have importantroles in cell proliferation, migration and survival. Gene Wiki entry for LCK (Lck)
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Genomic Viewsfor LCK gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_032977.9 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the LCK gene promoter: STAT1 Sp1 AP-1 AML1a STAT3 STAT1alpha Other transcription factors Search SABiosciences Chromatin IP Primers for LCK Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat LCK
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p34.3 Ensembl cytogenetic band: 1p35.1 HGNC cytogenetic band: 1p34.3 LCK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P032716: view genomic region
(about GC identifiers )
Start:
32,716,840 bp from pter
End:
32,751,766 bp from pter
Size:
34,927 bases
Orientation:
plus strand
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Proteinsfor LCK gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: LCK_HUMAN, P06239 (See
protein sequence )Recommended Name: Tyrosine-protein kinase Lck Size : 509 amino acids; 58001 Da
Subunit : Binds to the cytoplasmic domain of cell surface receptors, such as AXL, CD2, CD4, CD5, CD8, CD44, CD45 andCD122. Also binds to effector molecules, such as PI4K, VAV1, RASA1, FYB and to other protein kinases including CDK1, RAF1, ZAP70 and SYK. Binds to phosphatidylinositol 3'-kinase (PI3K) from T-lymphocytes through its SH3 domain and to the tyrosine phosphorylated form of KHDRBS1/p70 through its SH2 domain. Binds to HIV-1 Nef through its SH3 domain. This interaction inhibits its tyrosine-kinase activity. Interacts with SQSTM1. Interacts with phosphorylated LIME1. Interacts with CBLB and PTPRH. Interacts with RUNX3. Forms a signaling complex with EPHA1, PTK2B AND PI3-KINASE; upon activation by EFNA1 which may regulate T-lymphocyte migration. Associates with ZAP70 and RHOH; these interactions allow LCK-mediated RHOH and CD3 subunit phosphorylation in the presence of functional ZAP70
Subcellular location : Cytoplasm. Cell membrane; Lipid-anchor; Cytoplasmic side. Note=Present in lipid rafts in aninactive form
Mass spectrometry : Mass=57869.42; Method=MALDI; Range=2-509; Source=PubMed:11840567;
Sequence caution : Sequence=CAI22320.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=CAI22321.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
6/51 PDB 3D structures from and Proteopedia for LCK (see all 51 ):1BHF (3D)
  1BHH (3D)
  1CWD (3D)
  1CWE (3D)
  1FBZ (3D)
  1H92 (3D)
 
Secondary accessions : D3DPP8 P07100 Q12850 Q13152 Q5TDH8 Q5TDH9 Q7RTZ3 Q96DW4 Q9NYT8Alternative splicing : 3 isoforms : P06239-1 P06239-2 P06239-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for LCK: NX_P06239 Post-translational modifications:
Autophosphorylated on Tyr-394, increasing enzymatic activity, this site is dephosphorylated by PTN22. Phosphorylated on Tyr-505 by CSK, decreasing activity. Dephosphorylated by PTPRC/CD451
Myristoylation is required prior to palmitoylation (By similarity)1
Palmitoylation regulates subcellular location (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P06239 4/36 DME Specific Peptides for LCK (P06239 ) (see all 36 )LCK Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001036236.1 NP_005347.3 ENSEMBL proteins: ENSP00000337825 ENSP00000431517 ENSP00000435605 ENSP00000434525 ENSP00000362663 ENSP00000436554 ENSP00000362658 ENSP00000328213 ENSP00000362665 Reactome Protein details: P06239 Human Recombinant Protein Products: Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7 ): About this table
LCK for ontologies About GeneDecksing LCK Antibody Products: Assay Products for LCK:
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Protein
Domains / Familiesfor LCK gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
LCK for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry P06239 ProtoNet protein and cluster: P06239
3 Blocks protein families : IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: LCK_HUMAN, P06239 Domain : The SH2 domain mediates interaction with SQSTM1. Interaction is regulated by Ser-59 phosphorylationSimilarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SH2 domainSimilarity : Contains 1 SH3 domain
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Functionfor LCK gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: LCK_HUMAN, P06239 Function : Non-receptor tyrosine-protein kinase that plays an essential role in the selection and maturation ofdeveloping T-cells in the thymus and in the function of mature T-cells. Plays a key role in T-cell antigen receptor (TCR)-linked signal transduction pathways. Constitutively associated with the cytoplasmic portions of the CD4 and CD8 surface receptors. Association of the TCR with a peptide antigen-bound MHC complex facilitates the interaction of CD4 and CD8 with MHC class II and class I molecules, respectively, thereby recruiting the associated LCK protein to the vicinity of the TCR/CD3 complex. LCK then phosphorylates tyrosines residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the cytoplasmic tails of the TCR-gamma chains and CD3 subunits, initiating the TCR/CD3 signaling pathway. Once stimulated, the TCR recruits the tyrosine kinase ZAP70, that becomes phosphorylated and activated by LCK. Following this, a large number of signaling molecules are recruited, ultimately leading to lymphokine production. LCK also contributes to signaling by other receptor molecules. Associates directly with the cytoplasmic tail of CD2, which leads to hyperphosphorylation and activation of LCK. Also plays a role in the IL2 receptor-linked signaling pathway that controls the T-cell proliferative response. Binding of IL2 to its receptor results in increased activity of LCK. Is expressed at all stages of thymocyte development and is required for the regulation of maturation events that are governed by both pre-TCR and mature alpha beta TCR. Phosphorylates other substrates including RUNX3, PTK2B/PYK2, the microtubule-associated protein MAPT, RHOH or TYROBP Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme regulation : The relative activities of the inhibitory tyrosine-protein kinase CSK and the activatingtyrosine-protein phosphatase PTPRC/CD45 determine the level of LCK activity. These interactions allow rapid and efficient activation of LCK in response to TCR stimulation
Genatlas biochemistry entry for LCK : breakpoint in T-cell acute lymphoblastic leukemia with translocations t(1;7)(p34;q34) Enzyme Numbers (IUBMB): EC 2.7.10.2 1 2 EC 2.7.10 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LCK (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LCK (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): LCK (NM_005356 ) Sino Biological Human cDNA Clone for LCK DNA2.0 Custom Codon Optimized Gene
Synthesis Service for LCK Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LCK
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LCK
Gene Ontology (GO): 5/15 molecular function terms (GO ID links to tree view) (see all 15 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001948 glycoprotein binding
IPI 8650207 GO:0003823 antigen binding
IEA -- GO:0004713 protein tyrosine kinase activity
TAS -- GO:0004715 non-membrane spanning protein tyrosine kinase activity
IEA -- GO:0004722 protein serine/threonine phosphatase activity
ISS --
LCK for ontologies About GeneDecksing 3 GenomeRNAi human phenotypes for LCK :Animal Models: Mouse knock-outs for LCK: Lck tm1Mak Lck tm1.1Litt 5 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Lck) :
LCK for phenotypes About GeneDecksing
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Pathways & Interactionsfor LCK gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/69 super-pathways (see all 69 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Signaling by FGFR 2 PIP3 activates AKT signaling 3 CD28 co-stimulation 4 G-protein signaling K-RAS regulation pathway 5 Translocation of ZAP-70 to Immunological synapse
Pathway sources See GeneCards unified pathways Show all pathways 5/15 EMD Millipore Pathways for LCK (see all 15 )5/14 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for LCK (see all 14 )3
Cell Signaling Technology (CST) Pathways for LCK 5/15 GeneGo (Thomson Reuters) Pathways for LCK (see all 15 )5/25 BioSystems Pathways for LCK (see all 25 ) 5/57
Reactome Pathways for LCK (see all 57 )4
Kegg Pathways (Kegg details for LCK) :
LCK for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for LCK STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/289 Interacting proteins for LCK (P06239 1 , 2 , 3 ENSP00000337825 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 289 )Interactant Interaction Details GeneCard External ID(s) SYK P43405 2 , 3 , ENSP00000364898 4 MINT-8036452 MINT-8036467 MINT-16945 MINT-8033612 MINT-56730 MINT-8036437 MINT-8033597 MINT-8033582 I2D:
score=4 STRING: ENSP00000364898 SH2D2A Q9NP31 2 , 3 , ENSP00000357182 4 MINT-7303133 MINT-7303194 MINT-7135547 MINT-7135623 MINT-7303144 MINT-7135538 MINT-7135634 MINT-7135612 MINT-7135817 MINT-7135583 MINT-7303166 I2D:
score=6 STRING: ENSP00000357182 PTPRC P08575 1 , 2 , 3 , ENSP00000356346 4 EBI-1348,EBI-1341 MINT-8310873 MINT-8310398 MINT-8310416 MINT-8311622 MINT-8310648 I2D:
score=7 STRING: ENSP00000356346 KHDRBS1 Q07666 1 , 2 , 3 , ENSP00000313829 4 EBI-1348,EBI-1364 MINT-3374138 MINT-7212471 I2D:
score=5 STRING: ENSP00000313829 PTPN6 P29350 2 , 3 , ENSP00000391592 4 MINT-8310748 MINT-8310738 MINT-8310762 MINT-8310776 I2D:
score=4 STRING: ENSP00000391592
About this table Gene Ontology (GO): 5/35 biological process terms (GO ID links to tree view) (see all 35 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006468 protein phosphorylation
IDA 214242 GO:0006882 cellular zinc ion homeostasis
ISS -- GO:0006915 apoptotic process
-- -- GO:0006917 induction of apoptosis
ISS -- GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
ISS --
LCK for ontologies About GeneDecksing
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Drugs & Compoundsfor LCK gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
LCK for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for LCK
Compounds for LCK available from Tocris Bioscience About this table Compound Action
CAS
# Piceatannol Inhibits TNF-induced NF-kappaB activation [10083-24-6] Damnacanthal Potent, selective inhibitor of p65lck [477-84-9]
3 HMDB Compounds for LCK About this table 10/12 DrugBank Compounds for LCK (see all 12 ) About this table Compound Synonyms
CAS
# Type Actions PubMed Ids 1-Tert-Butyl-3-(4-Chloro-Phenyl)-1h-Pyrazolo[3,4-D]Pyrimidin-4-Ylamine -- -- target -- 17139284 17016423 10592235 Dasatinib -- 302962-49-8 target multitarget 20072833 11752352 17154512 (4-{2-Acetylamino-2-[1-(3-Carbamoyl-4-Cyclohexylmethoxy-Phenyl)-Ethylcarbamoyl}-Ethyl}-2-Phosphono-Phenoxy)-Acetic Acid -- -- target -- 17139284 17016423 Phosphoaminophosphonic Acid-Adenylate Ester -- -- target -- 17139284 17016423 Staurosporine -- 62996-74-1 target -- 17139284 17016423 {4-[2-Acetylamino-2-(3-Carbamoyl-2-Cyclohexylmethoxy-6,7,8,9-Tetrahydro-5h-Benzocyclohepten-5ylcarbamoyl)-Ethyl]-2-Phosphono-Phenyl}-Phosphonic Acid -- -- target -- 17139284 17016423 2,3-DIPHENYL-N-(2-PIPERAZIN-1-YLETHYL)FURO[2,3-B]PYRIDIN-4-AMINE -- -- target -- 10592235 3-(2-AMINOQUINAZOLIN-6-YL)-4-METHYL-N-[3-(TRIFLUOROMETHYL)PHENYL]BENZAMIDE -- -- target -- 10592235 5,6-DIPHENYL-N-(2-PIPERAZIN-1-YLETHYL)FURO[2,3-D]PYRIMIDIN-4-AMINE -- -- target -- 10592235 N-(2,6-dimethylphenyl)-5-phenylimidazo[1,5-a]pyrazin-8-amine -- -- target -- 10592235
10/68 Novoseek chemical compound relationships for LCK gene (see all 68 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
90.7
1050
16154907 (5), 8756658 (4), 1697929 (4), 9225005 (4) (see all 99 )
phosphotyrosine
80
35
8618896 (2), 7539434 (2), 8626636 (2), 12922168 (2) (see all 26 )
herbimycin a
73.6
8
7615501 (1), 9341768 (1), 9207149 (1), 9531565 (1) (see all 7 )
damnacanthal
70
8
7547985 (3), 10050753 (1), 11182374 (1)
a 201
57.7
2
17123354 (1)
ara-m
56.7
1
7509083 (1)
phosphatidylinositol
54.4
25
8845017 (3), 10636929 (1), 11694268 (1), 8096851 (1) (see all 18 )
st-pc
52.6
1
17266559 (1)
serine
50.7
58
9225005 (3), 1385559 (3), 12589038 (3), 8910336 (3) (see all 34 )
threonine
49.5
19
7547985 (1), 8794306 (1), 10762062 (1), 8887682 (1) (see all 15 )
Search CenterWatch for drugs/clinical trials and news about LCK
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Transcriptsfor LCK gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for LCK gene (2 alternative transcripts): NM_001042771.1 NM_005356.3 Unigene Cluster for LCK:
Lymphocyte-specific protein tyrosine kinase Hs.470627 [show with all ESTs ] Unigene Representative Sequence: BC013200 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000336890 (uc001bux.3 uc001bva.3 ) ENST00000482949 ENST00000495610 ENST00000355928 ENST00000476457 ENST00000469765 ENST00000461712 ENST00000373562 ENST00000477031 ENST00000373557 ENST00000333070 (uc010ohc.1 uc001buy.3 uc001buz.3 )ENST00000469956 ENST00000373564 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LCK (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LCK (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): LCK (NM_005356 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for LCK Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LCK
Additional cDNA sequence: AF228313.1 AJ865079.1 AK098027.1 AK303073.1 BC013200.1 M36881.1 U07236.1 X04476.1 X05027.1 X06369.1 X13529.1
19 DOTS entries : DT.91672474 DT.91762501
DT.95346527 DT.121325198 DT.121325457 DT.100021868 DT.414928 DT.121325377 DT.100749446 DT.121325427 DT.121325430 DT.75198010 DT.100739523 DT.100749445 DT.40106180 DT.91985416 DT.100662923 DT.121325197 DT.97804498 24/114 AceView cDNA sequences (see all 114 ):
AA354022 BI062938 AL558447 BC013200 BI062867 AW084769 BG686106 BQ711028 CB115016 AA357039 AA306569 BM918144 BG756739 AA961253 BF128825 CR594236 AF228313 BI063930 BI820532 BI062346 BM919471 BM917288 BF129162 AA282059 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for LCK (see all 11 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ SP1 :                     -           -       -                 SP2 :           -   -   -   -     -           -       -             -     SP3 :           -   -   -   -     -           -       -             -     SP4 :                     -           -       -       -       -     SP5 :                               -       -       -          
ExUns: 12 ^ 13 ^ 14a · 14b · 14c SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
ECgene alternative splicing isoforms for LCK
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Expression for LCK gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section LCK expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATGTCTTGG
About this image LCK expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 2 LifeMap Cells Name Category ES04(HES-4) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See LCK Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for LCK SOURCE GeneReport for Unigene cluster: Hs.470627 UniProtKB/Swiss-Prot: LCK_HUMAN, P06239 Tissue specificity : Expressed specifically in lymphoid cells SABiosciences Expression via Pathway-Focused PCR Arrays including LCK : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for LCKBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat LCK QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat LCK QIAGEN QuantiFast Probe-based Assays in human , mouse , rat LCK In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LCK
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Orthologsfor LCK gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for LCK gene from 4/17 species (see all 17 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
LCK1
lymphocyte-specific protein tyrosine kinase
80.18(n) 82.87(a)
 
396460 XM_427615.3 XP_427615.3
zebrafish (Danio rerio)
Actinopterygii
lck1
lymphocyte-specific protein tyrosine kinase
67.68(n) 71.72(a)
 
414333 NM_001001596.1 NP_001001596.1
fruit fly (Drosophila melanogaster)
Insecta
Src64B3
ring canal formation protein tyrosine kinase
48(a)
 
64B12 --
worm (Caenorhabditis elegans)
Secernentea
src-13
Expression: vulva, anus, mu_bod, pharyngeal muscle, more
44(a) (best of 6)
 
I(1567610-1580076) --
ENSEMBL Gene Tree for LCK (if available)TreeFam Gene Tree for LCK (if available)
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Paralogsfor LCK gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for LCK gene TEC 2 FRK 2 BLK 2 FGR 2 ITK 2 LYN 2 TXK 2 HCK 2 YES1 2 PTK6 2 SRC 2 ABL1 2 FYN 2 BMX 2 ABL2 2 SRMS 2 BTK 2 18/56 SIMAP similar genes for LCK using alignment to 8 protein entries: LCK_HUMAN (see all proteins )
(see all similar genes ):BLK FYN SRC YES1 LYN tec HCK ABL1 FGR DKFZp686M05208 EPHA2 SH3GL2 NCK1 c-fgr NCK2 SLA2 TXK BTK kinase deficient isoform 4
LCK for paralogs About GeneDecksing
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Genomic Variantsfor LCK gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for LCK (32716840 - 32751766 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for LCK: -- Human Gene Mutation Database (HGMD) : LCK SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing LCK
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Disorders
/ Diseasesfor LCK gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
LCK for disorders About GeneDecksing
OMIM gene information: 153390
OMIM disorders : --UniProtKB/Swiss-Prot: LCK_HUMAN, P06239
Note=A chromosomal aberration involving LCK is found in leukemias. Translocation t(1;7)(p34;q34) with TCRB 20/57 diseases for LCK (see all 57 ): About MalaCards scid due to lck deficiency epidemic pleurodynia common variable immunodeficiency human t-cell leukemia virus type 1 hypersensitivity reaction type ii disease severe combined immunodeficiency wiskott-aldrich syndrome combined immunodeficiency lupus erythematosus burkitt's lymphoma b-cell lymphomas lymphopenia systemic lupus erythematosus acute lymphoblastic leukemia rheumatoid arthritis chronic lymphocytic leukemia hepatitis c lymphoblastic leukemia herpes simplex fanconi's anemia 2 diseases from the University of Copenhagen DISEASES database for LCK :Lymphoma Leukemia 10/50 Novoseek disease relationships for LCK gene (see all 50 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
leukemia t-cell
65
25
2116390 (2), 8139546 (2), 9032329 (2), 2384277 (2) (see all 13 )
immunodeficiency
34.3
16
1535787 (2), 11351273 (1), 15976924 (1), 8794306 (1) (see all 13 )
thymoma
29.9
4
7997241 (1), 14688799 (1), 15634634 (1)
t-all
23.1
3
1663780 (1), 1680958 (1), 12542476 (1)
lymphoma t-cell
22.4
2
2285146 (1), 15513966 (1)
autoimmune diseases
19.9
6
19267483 (1), 11717807 (1), 17082661 (1), 16673863 (1)
hematopoietic malignancies
16.3
3
8712692 (1), 8086341 (1)
leukemia
7.33
5
7506428 (1), 20185581 (1), 18314490 (1), 7997241 (1)
asthma
5.58
2
18683785 (1), 18537718 (1)
metastasis
5.08
7
8869106 (2), 11180095 (2), 11668504 (1), 15634634 (1)
Genetic Association Database (GAD): LCK Human Genome Epidemiology (HuGE) Navigator: LCK (4 documents) Tumor Gene Database (TGDB) : LCK Export disorders for LCK gene to outside databases
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Publicationsfor LCK gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for LCK gene, integrated from 9 sources (see all 1042 ): (articles sorted by number of sources associating them with LCK) Utopia : connect your pdf to the dynamic world of online information
No association between lck gene polymorphisms and protein level in type 1 diabetes. (PubMed id 12401726) 1 , 2 , 4 Nervi S.... Vialettes B. (2002) Structure of the two promoters of the human lck gene: differential accumulation of two classes of lck transcripts in T cells. (PubMed id 2787474) 1 , 2 , 3 Takadera T.... Mak T.W. (1989) Oncogenic activation of the Lck protein accompanies translocation of the LCK gene in the human HSB2 T-cell leukemia. (PubMed id 8139546) 1 , 2 , 9 Wright D.D.... Kamps M.P. (1994) Identification of substrates of human protein-tyrosine phosphatase PTPN22. (PubMed id 16461343) 1 , 2 , 9 Wu J....Clark J.M. (2006) Intracellular signaling of the Ufo/Axl receptor tyrosine kinase is mediated mainly by a multi-substrate docking-site. (PubMed id 9178760) 1 , 2 , 9 Braunger J....Janssen J.W. (1997) p70 phosphorylation and binding to p56lck is an early event in interleukin-2-induced onset of cell cycle progression in T- lymphocytes. (PubMed id 7852312) 1 , 2 , 9 Vogel L.B. and Fujita D.J. (1995) Interaction of SAP-1, a transmembrane-type protein-tyrosine phosphatase, with the tyrosine kinase Lck. Roles in regulation of T cell function. (PubMed id 12837766) 1 , 2 , 9 Ito T.... Matozaki T. (2003) Phosphotyrosine-independent binding of a 62-kDa protein to the src homology 2 (SH2) domain of p56lck and its regulation by phosphorylation of Ser-59 in the lck unique N-terminal region. (PubMed id 8618896) 1 , 2 , 9 Park I.... Shin J. (1995) Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation. (PubMed id 8945479) 1 , 2 , 9 Yamaguchi H. and Hendrickson W.A. (1996) Human immunodeficiency virus type 1 Nef binds directly to LCK and mitogen-activated protein kinase, inhibiting kinase activity. (PubMed id 8794306) 1 , 2 , 9 Greenway A.L.... McPhee D.A. (1996)
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External Searches for LCK gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing LCK gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing LCK gene
(According to HUGE )
About This Section --
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Specialized Databases showing LCK gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for LCK gene: Search GeneIP for patents involving LCK GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor LCK gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for LCK OriGene shRNA RFP for LCK OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for LCK OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for LCK OriGene Protein Over-expression Lysate for LCK Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for LCK OriGene 3'-UTR Clone for LCK OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LCK OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LCK Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for LCK OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for LCK OriGene Custom Protein Services for LCK OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat LCK QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing LCK QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat LCK QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat LCK QIAGEN QuantiFast Probe-based Assays in human , mouse , rat LCK QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat LCK
Antibodies & Assays for LCK  
Tocris compounds for LCK
LCK Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LCK
ThermoFisher Antibody for LCK
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LCK
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