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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

LBX2 Gene

protein-coding GIFtS: 43
GCID: GC02M074724

ladybird homeobox 2

(Previous name: ladybird homeobox homolog 2 (Drosophila) )

Explore 1 disease affiliated with
LBX2 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Ladybird Homeobox 2¹ ²		Ladybird Homeobox Homolog 2²
Ladybird Homeobox Protein Homolog 2² ³		Ladybird-Like Homeobox 2²
Ladybird Homeobox Homolog 2 (Drosophila)¹		Ladybird-Like Homeodomain Protein 2²
Lady Bird-Like Homeobox 2²		Transcription Factor LBX2²

External Ids:	HGNC: 15525¹	Entrez Gene: 85474²	Ensembl: ENSG00000179528⁷	OMIM: 607164⁵	UniProtKB: Q6XYB7³

Export aliases for LBX2 gene to outside databases

Previous GC identifers: GC02U990293 GC02M074637 GC02M074578 GC02M074460

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: LBX2_HUMAN, Q6XYB7

Function: Putative transcription factor (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000002.11 NC_018913.1 NT_022184.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the LBX2 gene promoter:
E2F-3a E2F-4 E2F-5 STAT1 E2F-2 PPAR-gamma1 E2F-1 E2F PPAR-gamma2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: LBX2 promoter sequence

Search SABiosciences Chromatin IP Primers for LBX2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LBX2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p13.1 Ensembl cytogenetic band: 2p13.1 HGNC cytogenetic band: 2p13.1

LBX2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LBX2 gene location

GeneLoc information about chromosome 2 GeneLoc Exon Structure

GeneLoc location for GC02M074724: view genomic region (about GC identifiers)

Start:	74,724,644 bp from pter	End:	74,732,192 bp from pter
Size:	7,549 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: LBX2_HUMAN, Q6XYB7 (See protein sequence)

Recommended Name: Transcription factor LBX2

Size: 198 amino acids; 21482 Da

Subcellular location: Nucleus (By similarity)

Secondary accessions: Q7Z5Y8

Alternative splicing: 2 isoforms: Q6XYB7-1 Q6XYB7-2 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for LBX2: NX_Q6XYB7

LBX2 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001009812.1

ENSEMBL proteins:

ENSP00000366789 ENSP00000417116 ENSP00000450229

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	Uscn Proteins for LBX2

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

LBX2 for ontologies About GeneDecksing

LBX2 Antibody Products:

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	Uscn ELISAs and CLIAs for LBX2

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

LBX2 for domains About GeneDecksing

2 InterPro domains/families:

IPR001356 Homeodomain

IPR009057 Homeodomain-like

Graphical View of Domain Structure for InterPro Entry Q6XYB7

ProtoNet protein and cluster: Q6XYB7

1 Blocks protein family: IPB000047 Lambda and other repressor helix-turn-helix signature

UniProtKB/Swiss-Prot: LBX2_HUMAN, Q6XYB7

Similarity: Contains 1 homeobox DNA-binding domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: LBX2_HUMAN, Q6XYB7

Function: Putative transcription factor (By similarity)

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In Situ Assay
Products:

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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003700	sequence-specific DNA binding transcription factor activity	IEA	--
GO:0043565	sequence-specific DNA binding	IEA	--

LBX2 for ontologies           About GeneDecksing

Animal Models:
     Mouse knock-out Lbx2^tm1Fchn for LBX2
     4 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Lbx2):

embryogenesis

homeostasis/metabolism

mortality/aging

nervous system

LBX2 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for LBX2

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for LBX2 (Q6XYB7³ ENSP00000417116⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
MYC	P01106³, ENSP00000367207⁴	I2D: score=1 STRING: ENSP00000367207

About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006351	transcription, DNA-dependent	IEA	--

LBX2 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for LBX2
Search CenterWatch for drugs/clinical trials and news about LBX2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for LBX2 gene:

NM_001009812.1

Unigene Cluster for LBX2:

Ladybird homeobox 2

Hs.722114 [show with all ESTs]

Unigene Representative Sequence: AY305861

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000377566(uc002slv.4) ENST00000460508(uc002slw.3) ENST00000341396

ENST00000550249

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		5 QIAGEN miScript miRNA Assays for microRNAs that regulate LBX2:
		hsa-miR-422a hsa-miR-378c hsa-miR-378 hsa-miR-378b hsa-miR-1269
		SwitchGear 3'UTR luciferase reporter plasmid: LBX2 3' UTR sequence

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Additional cDNA sequence:

AY203953.1 AY305861.1 BC127932.1 BC127933.1 BC144442.1 BC150517.1 BC150518.1

2 DOTS entries:

DT.101959191 DT.99982153

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

LBX2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTCCCCCGAG

About this image

LBX2 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Posterior foregut-like cells (A scalable, suspensi...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See LBX2 Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.722114

SABiosciences Expression via Pathway-Focused PCR Array including LBX2:

Homeobox (HOX) Genes in human mouse rat

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LBX2

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for LBX2 (if available)
TreeFam Gene Tree for LBX2 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for LBX2 gene

NKX2-3² TLX1² HMX2² NKX3-2² NKX2-8² NKX2-6² NKX2-1² NKX2-5²

NKX2-2² LBX1² HMX3² NKX2-4² TLX3² HMX1² TLX2² NKX3-1²

1 SIMAP similar gene for LBX2 using alignment to 2 protein entries: LBX2_HUMAN (see all proteins):

LBX1

LBX2 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Clinical significance	Chr 2 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
rs189813200^1,2	--	74724155(+)	`GTAAAA/GTTTCT`	1	--	int¹		0	--	--	--	--
rs182267339^1,2	--	74724362(+)	`AGGTGA/GGCCAA`	1	--	int¹		0	--	--	--	--
rs186509651^1,2	--	74724394(+)	`GGCCCA/GGTGAC`	1	--	int¹		0	--	--	--	--
rs116810423^1,2	--	74724547(+)	`TTGCAT/CTGAAA`	1	--	int¹		1		NA	120
rs149693976^1,2	--	74724652(+)	`GGCAGA/CGTCTC`	1	--	ut3¹		0	--	--	--	--
rs193258880^1,2	--	74724672(+)	`CTCAAA/GTATTG`	1	--	ut3¹		0	--	--	--	--
rs199935347^1,2	--	74724715(+)	`TCTCT-/AAAAAA`	1	--	ut3¹		0	--	--	--	--
rs183874491^1,2	--	74724716(+)	`TCTCTA/CAAAAA`	1	--	ut3¹		0	--	--	--	--
rs188831634^1,2	--	74724717(+)	`CTCTAA/TAAAAA`	1	--	ut3¹		0	--	--	--	--
rs192872827^1,2	--	74724750(+)	`GGTGGC/TGCTGC`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for LBX2 (74724644 - 74732192 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for LBX2
2 CNVs: 50556 3366

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

LBX2 for disorders           About GeneDecksing

OMIM gene information: 607164    OMIM disorders: --

1 disease for LBX2:    About MalaCards

alstrom syndrome

Export disorders for LBX2 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for LBX2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with LBX2)

Utopia: connect your pdf to the dynamic
world of online information

Characterization of the murine Lbx2 promoter, identification of the human homologue, and evaluation as a candidate for Alstrom syndrome. (PubMed id 11386758)^{1, 2, 3} Chen F.... Epstein J.A. (2001)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)² Wan D....Gu J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)
Toward a complete human genome sequence. (PubMed id 9847074)¹ Wilson R. (1998)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 85474	HGNC: 15525	Ensembl:ENSG00000179528	euGenes: HUgn85474	ECgene: LBX2
H-InvDB: LBX2

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for LBX2	Pharmacogenomics, SNPs, Pathways

Intellectual Property for LBX2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for LBX2 gene:
Search GeneIP for patents involving LBX2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section

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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LBX2

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes LBX2 gene at Home site.

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LBX2 Gene

ladybird homeobox 2

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LBX2 Gene

ladybird homeobox 2

Aliasesfor LBX2 gene

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Genomic Viewsfor LBX2 gene

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Protein Domains /Familiesfor LBX2 gene

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Genome Databases showing LBX2 gene

Other Databases showing LBX2 gene

Specialized Databases showing LBX2 gene

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for LBX2 gene

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for LBX2 gene

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for LBX2 gene

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for LBX2 gene

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Families
for LBX2 gene

Function
for LBX2 gene

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for LBX2 gene

Drugs & Compounds
for LBX2 gene

Transcripts
for LBX2 gene

Expression
for LBX2 gene

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for LBX2 gene

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for LBX2 gene

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for LBX2 gene

Disorders / Diseases
for LBX2 gene

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for LBX2 gene

Intellectual Property
for LBX2 gene

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for LBX2 gene