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Aliases & Descriptions for LBR
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DHCR14B 1 , 2 FLJ43126 2 LMN2R 2 , 3 MGC9041 2 OTTHUMP00000035631 2 PHA 2 , 5
Descriptions Integral nuclear envelope inner membrane protein 2 , 3 lamin B receptor 2
Search outside databases for aliases for LBR genePrevious GC identifers: GC01M224071 GC01M221406 GC01M221996 GC01M222563 GC01M221895
Summaries for LBR (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LBR : The protein encoded by this gene belongs to the ERG4/ERG24 family. It localized in the nuclearenvelope inner membrane and anchors the lamina and the heterochromatin to the membrane. It maymediate interaction between chromatin and lamin B. Mutations of this gene has been associated withautosomal recessive HEM/Greenberg skeletal dysplasia. Alternative splicing occurs at this locusand two transcript variants encoding the same protein have been identified. [provided by RefSeq] UniProtKB/Swiss-Prot: LBR_HUMAN, Q14739 Function : Anchors the lamina and the heterochromatin to the inner nuclear membrane
Gene Wiki entry for LBR (Lamin_B_receptor)
Genomic Location for LBR
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LBR gene Entrez Gene cytogenetic band: 1q42.1 Ensembl cytogenetic band: 1q42.12 HGNC cytogenetic band: 1q42.1 LBR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M223657:
(about GC identifiers )
Start:
223,655,827 bp from pter
End:
223,683,142 bp from pter
Size:
27,316 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004559.13 Proteins for LBR
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LBR_HUMAN, Q14739 (See
protein sequence )Recommended Name: Lamin-B receptor Size : 615 amino acids; 70703 Da
Subunit : Interacts directly with CBX5. Can interact with chromodomain proteins. Interacts directlywith DNA. Interaction with DNA is sequence independent with higher affinity for supercoiled andrelaxed circular DNA than linear DNA
Subcellular location : Nucleus inner membrane; Multi-pass membrane protein
PDB structures from and Proteopedia : 2DIG (3D)
 
Secondary accessions : Q14740 Q53GU7 Q59FE6
Post-translational modifications:
Phosphorylated by CDC2 protein kinase in mitosis when the inner nuclear membrane breaks down intovesicles that dissociate from the lamina and the chromatin. It is phosphorylated by differentprotein kinases in interphase when the membrane is associated with these structures.Phosphorylation of LBR and HP1 proteins may be responsible for some of the alterations inchromatin organization and nuclear structure which occur at various times during the cell cycle1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002287.2 NP_919424.1 ENSEMBL proteins: ENSP00000339883 ENSP00000272163 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for LBR: Assays for LBR:
Protein
Domains/ Families for LBR(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q14739 ProtoNet protein and cluster: Q14739
3 Blocks protein families : IPB001171 ERG4/ERG24 ergosterol biosynthesis protein IPB002999 Tudor domain IPB011024 Gamma-crystallin related UniProtKB/Swiss-Prot: LBR_HUMAN, Q14739 Similarity : Belongs to the ERG4/ERG24 family
Gene Function for LBR
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002296 Applied Biosystems Silencer ® siRNAs for LBR Sigma-Aldrich siRNA and siRNA Panels for LBR Sigma-Aldrich shRNA for LBR Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002296                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002296                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002296  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_194442 UniProtKB/Swiss-Prot: LBR_HUMAN, Q14739 Function : Anchors the lamina and the heterochromatin to the inner nuclear membrane
Genatlas biochemistry entry for LBR :lamin B receptor,integral protein of the nuclear enveloppe inner membrane,binding the lamina to chrhetrerochromatin,ubiquitously expressed,LAP2 (lamina-associated protein 2) family
15/22 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Lbr) (see all 22
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for LBR
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for LBR 5/20 Interacting proteins for LBR (Q14739 1 , 2 ENSP00000339883 3 ) via UniProtKB, MINT, and/or STRING (see all 20
)Interactant Interaction Details GeneCard External ID(s) CBX5 P45973 1 , ENSP00000209875 3 EBI-1055147, EBI-78219 STRING (score=.988 ) CBX3 Q13185 1 , ENSP00000336687 3 EBI-1055147, EBI-78176 STRING (score=.832 ) YWHAG P61981 1 , 2 EBI-1055147, EBI-359832 MINT-50793 EBI-1055147, EBI-359832 MINT-50793 YWHAG P61981 1 , 2 EBI-1055147, EBI-359832 MINT-50793 EBI-1055147, EBI-359832 MINT-50793 YWHAB P31946 2 MINT-50938
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Drugs & Compounds for LBR (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LBR 10/51 Novoseek chemical compound relationships for LBR gene (see all 51
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
con a
69.38
32
2054070 (3), 1997001 (3), 16286849 (2), 1657242 (2) (see all 23 )
ionomycin
66.75
35
8299228 (3), 8098667 (3), 8586487 (3), 11841833 (2) (see all 21 )
thymidine
62.42
40
1974593 (1), 8288318 (1), 10981527 (1), 2111191 (1) (see all 36 )
3beta-hydroxysterol
58.49
7
16784888 (3)
phorbol 12,13-dibutyrate
44.05
14
8299228 (2), 8402922 (2), 16568834 (2), 7593202 (1) (see all 6 )
calcium
25.74
50
7800684 (2), 7829128 (2), 1827986 (2), 8299228 (2) (see all 33 )
sterol
23.53
13
9630650 (3), 9878250 (2), 12618959 (2), 10411271 (1) (see all 5 )
a23187
22.92
1
1829396 (1)
ppix
21.53
1
9613240 (1)
neopterin
21.19
2
2127317 (1), 9566389 (1)
About this table
Transcripts for LBR(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002296 Sigma-Aldrich siRNA and siRNA Panels for LBR Sigma-Aldrich shRNA for LBR Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002296 NM_194442
REFSEQ mRNAs for LBR gene (2 alternative transcripts): NM_002296.2 NM_194442.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002296 NM_194442
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002296                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002296                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002296  
Additional cDNA sequence: AB209514.1 AK222834.1 AK303589.1 AK312258.1 BC020079.1 CR611515.1 CR626457.1 L25931.1
15 DOTS entries : DT.87017006 DT.86843514 DT.95196450 DT.92002360 DT.87017009 DT.100817668 DT.95313391 DT.100692097 DT.95235214 DT.100641937 DT.100817675 DT.87017008 DT.91764211 DT.95196448 DT.95196451
24/310 AceView cDNA sequences (see all 310
):NM_002296 AL601685 BU176075 BF434266 AW014332 AI161010 BF434265 BQ425976 AW148868 BU682707 AU137830 AW590073 AU130258 AA318500 AA057743 CB109614 AA903251 AA744808 CB156205 AA741047 AI961385 BX281056 BU629100 AW473042
highest scoring ESTs for LBR :BE243907 BG773304 BX479564 L25931 AA057743 AA086058 AA086146 AA086147 AA099136 AA099192
Unigene Cluster for LBR: Lamin B receptor Hs.435166 [show with all ESTs ] Unigene Representative Sequence: NM_002296 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for LBR (see all 6
) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b SP1 :         -                         -           SP2 :                             -               SP3 :   -   -     -                                   SP4 :         -                                   SP5 :                                          
About this scheme ECgene alternative splicing isoforms for LBR 2 Ensembl transcripts including schematic representations : ENST00000338179
ENST00000272163
Expression for LBR
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LBR expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LBR 1 / 2 / 3
5 probe-sets matching LBR gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTATTTGGCSOURCE GeneReport for Unigene cluster: Hs.435166 Expression variation in blood from EXPOLDB for LBR
Orthologs for LBR
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LBR gene from 5/15 species (see all 15
)
About this table Species with no ortholog for LBR ENSEMBL Gene Tree for LBR Paralogs for LBR (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LBR gene DHCR7 2 TM7SF2 2
SNPs/Variants for LBR (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LBR (up to first 250kb)
Disorders & Mutations for LBR
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600024 disorders : 169400 215140 UniProtKB/Swiss-Prot: LBR_HUMAN, Q14739
Defects in LBR are a cause of Pelger-Huet anomaly (PHA) [MIM:169400]. PHA is an autosomaldominant inherited abnormality of neutrophils, characterized by reduced nuclear segmentation andan apparently looser chromatin structure. Heterozygotes show hypolobulated neutrophil nuclei withcoarse chromatin. Presumed homozygous individuals have ovoid neutrophil nuclei, as well as varyingdegrees of developmental delay, epilepsy, and skeletal abnormalities Defects in LBR are the cause of hydrops-ectopic calcification-moth-eaten skeletaldysplasia (HEM) [MIM:215140]; also known as Greenberg skeletal dysplasia. HEM is a rare autosomalrecessive chondrodystrophy characterized by early in utero lethality and, therefore, considered tobe nonviable. Affected fetuses typically present with fetal hydrops, short-limbed dwarfism, and amarked disorganization of chondro-osseous calcification and may present with polydactyly andadditional nonskeletal malformations
10/62 Novoseek disease relationships for LBR gene (see all 62
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pelger-huet anomaly
74.03
5
14617022 (2), 12618959 (1), 15724491 (1)
necrosis
46.79
21
9698426 (1), 11729831 (1), 18288269 (1), 9020407 (1) (see all 21 )
tetanus
42.14
14
1643425 (2), 8223849 (1), 11357954 (1), 10744782 (1) (see all 12 )
immunodeficiency
36.59
4
8658055 (1), 9588845 (1), 7532407 (1), 9311806 (1)
biliary cirrhosis primary
33.45
4
7515343 (1), 8425102 (1), 8157662 (1), 8550049 (1)
lymphopenia
32.97
1
8761000 (1)
leukemia
20.23
8
8640841 (2), 1693168 (1), 10077340 (1), 7691315 (1) (see all 6 )
skeletal dysplasia
20.04
3
16784888 (1), 18382993 (1)
rheumatoid arthritis
19.87
3
1393371 (1), 7821975 (1), 2113447 (1)
dermatitis atopic
19.71
5
1531123 (2), 10981527 (1)
About this table Human Gene Mutation Database : LBR
Medical News for LBR (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LBR (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/509 PubMed articles for LBR gene (see all 509
): Characterization of the human gene encoding LBR, an integral protein of the nuclear envelope inner membrane. (PubMed id 8157663) 2, 3, 4 Schuler E.... Worman H.J. (1994) Primary structure analysis and lamin B and DNA binding of human LBR, an integral protein of the nuclear envelope inner membrane. (PubMed id 8157662) 1, 3, 4 Ye Q. and Worman H.J. (1994) Lamin B-receptor mutations in Pelger-Huet anomaly. (PubMed id 14617022) 1, 3, 4 Best S....Rees D.C. (2003) The human lamin B receptor/sterol reductase multigene family. (PubMed id 9878250) 1, 2, 3 Holmer L....Worman H.J. (1998) Autosomal recessive HEM/Greenberg skeletal dysplasia is caused by 3 beta-hydroxysterol delta 14-reductase deficiency due to mutations in the lamin B receptor gene. (PubMed id 12618959) 1, 3, 4 Waterham H.R.... Oosterwijk J.C. (2003) Inner nuclear membrane protein LBR preferentially interacts with DNA secondary structures and nucleosomal linker. (PubMed id 10828963) 1, 3, 4 Duband-Goulet I. and Courvalin J.-C. (2000) Domain-specific interactions of human HP1-type chromodomain proteins and inner nuclear membrane protein LBR. (PubMed id 9169472) 1, 3, 4 Ye Q.... Worman H.J. (1997) The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain. (PubMed id 15882967) 3, 4 Lechner M.S.... Rauscher F.J. III (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Mutations in the gene encoding the lamin B receptor produce an altered nuclear morphology in granulocytes (Pelger-Huet anomaly). (PubMed id 12118250) 3, 4 Hoffmann K.... Sperling K. (2002)
Search for LBR
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Genome Databases showing LBR
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LBR
(According to HUGE )
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Specialized Databases showing LBR (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=LBR
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-- Services for LBR (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LBR:
Search Tocris compounds for LBR
Antibodies for LBR
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009