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Aliases & Descriptions for LBP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC22233 2 | | OTTHUMP00000030965 2 |
| | | Descriptions |
|---|
| LPS-binding protein 2 | | lipopolysaccharide binding protein 2 | | lipopolysaccharide-binding protein 1, 2 |
|
| | Search outside databases for aliases for LBP genePrevious GC identifers: GC20P036703 GC20P037613 GC20P037660 |
Summaries for LBP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for LBP: The protein encoded by this gene is involved in the acute-phase immunologic response to gram-negative bacterial infections. Gram-negative bacteria contain a glycolipid, lipopolysaccharide (LPS), on their outer cell wall. Together with bactericidal permeability-increasing protein (BPI), the encoded protein binds LPS and interacts with the CD14 receptor, probably playing a role in regulating LPS-dependent monocyte responses. Studies in mice suggest that the encoded protein is necessary for the rapid acute-phase response to LPS but not for the clearance of LPS from circulation. This protein is part of a family of structurally and functionally related proteins, including BPI, plasma cholesteryl ester transfer protein (CETP), and phospholipid transfer protein (PLTP). Finally, this gene is found on chromosome 20, immediately downstream of the BPI gene. [provided by RefSeq] UniProtKB/Swiss-Prot: LBP_HUMAN, P18428Function: Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present in the outer membrane of all Gram-negative bacteria. The LBP/LPS complex seems to interact with the CD14 receptorGene Wiki entry for LBP (Lipopolysaccharide-binding_protein) |
Genomic Location for LBP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the LBP gene 
Entrez Gene cytogenetic band: 20q11.23-q12 Ensembl cytogenetic band: 20q11.23 HGNC cytogenetic band: 20q11.23LBP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20P036408:
(about GC identifiers)
Start:
|
36,408,299 bp from pter |
End:
|
36,439,067 bp from pter |
Size:
|
30,769 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000020.9 NT_011362.9
| Proteins for LBP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: LBP_HUMAN, P18428 (See
protein sequence)Recommended Name: Lipopolysaccharide-binding protein precursor Size: 481 amino acids; 53384 Da
Subcellular location: Secreted
Secondary accessions: O43438 Q92672 Q9H403 Q9UD66REFSEQ proteins: NP_004130.2
ENSEMBL proteins: ENSP00000217407
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for LBP: Assays for LBP: | Protein
Domains/ Families for LBP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P18428
ProtoNet protein and cluster: P18428 1 Blocks protein family: IPB001124 Lipid-binding serum glycoprotein
UniProtKB/Swiss-Prot: LBP_HUMAN, P18428Similarity: Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family | Gene Function for LBP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004139
Applied Biosystems Silencer® siRNAs for LBP
Sigma-Aldrich siRNA and siRNA Panels for LBP  Sigma-Aldrich shRNA for LBP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004139                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004139                                  untagged cDNA clone in CMV expression vector: NM_004139 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004139
UniProtKB/Swiss-Prot: LBP_HUMAN, P18428Function: Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present in the outer membrane of all Gram-negative bacteria. The LBP/LPS complex seems to interact with the CD14 receptorGenatlas biochemistry entry for LBP:lipopolysaccharide,acute-phase protein specifically binding to the lipid A moiety of liposaceharide (LPS,endotoxin) from the cell wall of Gram- bacteria binding protein,and directing it to the CD14 receptor mainly expressed by phagocytes1 MGI mutant phenotype (inferred from 2 alleles ) (MGI details for Lbp):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for LBP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/10 Sigma-Aldrich "Your Favorite Gene" Pathways for LBP (Your Favorite Gene powered by Ingenuity) (see all 10
) 
Gene Network CentralTM Interacting Genes and Proteins Network for LBP 
5/13 Interacting proteins for LBP (ENSP000002174073) via UniProtKB, MINT, and/or STRING (see all 13
)About this table
5/19 Gene Ontology (GO) biological process terms (links to tree view) (see all 19
): About this table
|
Drugs & Compounds for LBP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for LBP 10/25 Novoseek chemical compound relationships for LBP gene (see all 25
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| endotoxin |
85.52 |
147 |
14733729 (5), 17206721 (5), 10515819 (4), 8704115 (4) (see all 69) |
| lipoteichoic acid |
69.49 |
32 |
12594207 (4), 16928689 (4), 9925653 (2), 11828371 (2) (see all 8) |
| phospholipid |
50.63 |
42 |
8985160 (2), 9103463 (2), 10768924 (2), 15784577 (2) (see all 26) |
| monophosphoryl lipid a |
43.46 |
3 |
17254389 (1), 7515085 (1) |
| peptidoglycan |
37.77 |
4 |
15294986 (1), 8051139 (1), 11705912 (1) |
| lipid |
30.45 |
34 |
7536794 (3), 16303759 (3), 9441745 (2), 10607703 (2) (see all 19) |
| fibrinogen |
25.45 |
11 |
10607703 (3), 9715256 (1), 18277064 (1), 17081803 (1) (see all 7) |
| il 10 |
23.86 |
1 |
16050543 (1) |
| glycolipid |
23.48 |
2 |
9568897 (1) |
| polysulfone |
18.17 |
1 |
7507806 (1) |
About this table
|
Transcripts for LBP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004139
Sigma-Aldrich siRNA and siRNA Panels for LBP  Sigma-Aldrich shRNA for LBP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004139 REFSEQ mRNAs for LBP gene: NM_004139.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004139               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004139                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004139                                  untagged cDNA clone in CMV expression vector: NM_004139  Additional cDNA sequence: AF105067.1 AK313625.1 AY344471.1 BC022256.1 CR592006.1 CR606921.1 CR613938.1 CR621941.1 M35533.1 2 DOTS entries: DT.110781 DT.100776620 24/59 AceView cDNA sequences (see all 59
):NM_004139 CA489550 CR621941 BX406391 AV658726 CB164493 BG618841 CR592006 BX325221 CB163947 CR606921 CR613938 R29149 T61393 BG618594 BX405350 BQ669569 AL531909 BX423833 AL708488 AL557972 BI763303 CB161731 CB162798
highest scoring ESTs for LBP:AF105067 AL531908 AL557972 AW193105 AW953660 BG567007 BI762328 BQ028088 BX108847 BX325220 Unigene Cluster for LBP: Lipopolysaccharide binding protein Hs.154078 [show with all ESTs]Unigene Representative Sequence: NM_004139
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000217407
|
Expression for LBP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| LBP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for LBP
1 / 2 / 3 5 probe-sets matching LBP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AACCTGGAAC
SOURCE GeneReport for Unigene cluster: Hs.154078
Expression variation in blood from EXPOLDB for LBP |
Orthologs for LBP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for LBP gene from 5/7 species (see all 7
)
About this table Species with no ortholog for LBP
ENSEMBL Gene Tree for LBP | Paralogs for LBP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for LBP gene
- BPIL22 PLTP2 BPI2
|
SNPs/Variants for LBP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for LBP (up to first 250kb)
|
Disorders & Mutations for LBP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 151990
10/47 Novoseek disease relationships for LBP gene (see all 47
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| response acute phase |
74.09 |
37 |
8668165 (2), 8588345 (2), 8021509 (2), 9442384 (2) (see all 18) |
| shock septic |
73.94 |
18 |
14624690 (3), 7963737 (2), 11739189 (2), 1284855 (1) (see all 11) |
| gram-negative bacterial infections |
72.03 |
4 |
8432532 (1), 9380744 (1), 7678583 (1), 7504510 (1) |
| sepsis |
67.13 |
101 |
11373419 (5), 18552695 (5), 16512634 (5), 16569262 (4) (see all 35) |
| systemic inflammatory response syndrome |
65.76 |
12 |
18552695 (2), 16569262 (1), 16875458 (1), 7538550 (1) (see all 8) |
| necrosis |
59.10 |
42 |
7685250 (2), 1281827 (1), 7543094 (1), 7562749 (1) (see all 37) |
| inflammation |
43.66 |
25 |
7562749 (2), 17601541 (2), 8418776 (2), 11605136 (1) (see all 17) |
| nasal epithelium |
43.61 |
2 |
12427544 (1) |
| bacterial infections |
42.80 |
14 |
9360683 (2), 16407966 (2), 17259880 (2), 17328727 (1) (see all 9) |
| hepatitis alcoholic |
42.34 |
2 |
10803780 (1) |
About this table
Genetic Association Database: LBP Human Genome Epidemiology Navigator: LBP (18 documents)
|
Medical News for LBP(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for LBP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/393 PubMed articles for LBP gene (see all 393
):- The genomic organization of the genes for human lipopolysaccharide binding protein (LBP) and bactericidal permeability increasing protein (BPI) is highly conserved. (PubMed id 9240454)1, 3, 4 Hubacek J.A.... Schmitz G. (1997)
- Similar organization of the lipopolysaccharide-binding protein (LBP) and phospholipid transfer protein (PLTP) genes suggests a common gene family of lipid-binding proteins. (PubMed id 9441745)1, 3, 4 Kirschning C.J.... Schumann R.R. (1997)
- Bactericidal/permeability-increasing protein and lipopolysaccharide (LPS)-binding protein. LPS binding properties and effects on LPS- mediated cell activation. (PubMed id 7517398)1, 3, 4 Wilde C.G.... Scott R.W. (1994)
- Polymorphisms in the lipopolysaccharide-binding protein and bactericidal/permeability-increasing protein in patients with myocardial infarction. (PubMed id 12521224)1, 3, 6 Hubacek J.A....Poledne R. (2002)
- Gene variants of the bactericidal/permeability increasing protein and lipopolysaccharide binding protein in sepsis patients: gender-specific genetic predisposition to sepsis. (PubMed id 11373419)1, 3, 6 Hubacek J.A....Schmitz G. (2001)
- Characterization of a single nucleotide polymorphism in the lipopolysaccharide binding protein and its association with sepsis. (PubMed id 12615620)1, 3, 6 Barber R.C. and O'Keefe G.E. (2003)
- The BPI/LBP family of proteins: a structural analysis of conserved regions. (PubMed id 9568897)1, 3, 4 Beamer L.J.... Eisenberg D. (1998)
- The genes for the lipopolysaccharide binding protein (LBP) and the bactericidal permeability increasing protein (BPI) are encoded in the same region of human chromosome 20. (PubMed id 8432532)1, 2, 3 Gray P.W....Shows T.B. (1993)
- Structure and function of lipopolysaccharide binding protein. (PubMed id 2402637)1, 3, 4 Schumann R.R.... Ulevitch R.J. (1990)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)3, 4 Deloukas P....Rogers J. (2001)
|
Search for LBP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing LBP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing LBP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing LBP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for LBP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for LBP:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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