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LBP Gene

protein-coding   GIFtS: 63

GC20P036408
lipopolysaccharide binding protein
(Previous name: lipopolysaccharide-binding protein )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
MGC22233 2
OTTHUMP00000030965 2
Descriptions
LPS-binding protein 2
lipopolysaccharide binding protein 2
lipopolysaccharide-binding protein 1, 2
External Ids
HGNC: 65171
Entrez Gene: 39292
UniProtKB: P184283
Ensembl: ENSG000001299887
Search outside databases for aliases for LBP gene

Previous GC identifers: GC20P036703 GC20P037613 GC20P037660

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for LBP:
The protein encoded by this gene is involved in the acute-phase immunologic response to
gram-negative bacterial infections. Gram-negative bacteria contain a glycolipid,
lipopolysaccharide (LPS), on their outer cell wall. Together with bactericidal
permeability-increasing protein (BPI), the encoded protein binds LPS and interacts with the CD14
receptor, probably playing a role in regulating LPS-dependent monocyte responses. Studies in mice
suggest that the encoded protein is necessary for the rapid acute-phase response to LPS but not
for the clearance of LPS from circulation. This protein is part of a family of structurally and
functionally related proteins, including BPI, plasma cholesteryl ester transfer protein (CETP),
and phospholipid transfer protein (PLTP). Finally, this gene is found on chromosome 20,
immediately downstream of the BPI gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: LBP_HUMAN, P18428
Function: Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present
in the outer membrane of all Gram-negative bacteria. The LBP/LPS complex seems to interact with
the CD14 receptor

Gene Wiki entry for LBP (Lipopolysaccharide-binding_protein)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the LBP gene  

Entrez Gene cytogenetic band: 20q11.23-q12   Ensembl cytogenetic band:  20q11.23   HGNC cytogenetic band: 20q11.23

LBP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P036408:     (about GC identifiers)

Start:
36,408,299 bp from pter
End:
36,439,067 bp from pter
Size:
30,769 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000020.9  NT_011362.9  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: LBP_HUMAN, P18428 (See protein sequence)
Recommended Name: Lipopolysaccharide-binding protein precursor  
Size: 481 amino acids; 53384 Da
Subcellular location: Secreted
Secondary accessions: O43438 Q92672 Q9H403 Q9UD66

REFSEQ proteins: NP_004130.2  

ENSEMBL proteins: 
ENSP00000217407 


Human Recombinant Proteins 
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Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
R&D Systems Recombinant & Natural Proteins for LBP
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (LBP)
Human Recombinant Proteins from Abnova (LBP)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005615 extracellular space ISS2477488
GO:0005634 nucleus IDA18029348
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Antibodies for LBP: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for LBP
R&D Systems Antibodies for LBP
Antibodies from Abcam (LBP), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (LBP)
Novus Biologicals Antibody for LBP

Assays for LBP: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro domains/families:
 IPR017954 Lipid-bd_serum_glycop_CS
 IPR017942 Lipid-bd_serum_glycop_N
 IPR001124 Lipid_bd_serum_glycop_C


   GeneDecks  LBP for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P18428

ProtoNet protein and cluster: P18428

1 Blocks protein family: IPB001124 Lipid-binding serum glycoprotein

UniProtKB/Swiss-Prot: LBP_HUMAN, P18428
Similarity: Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (LBP)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004139

              Applied Biosystems Silencer® siRNAs for LBP

              Sigma-Aldrich siRNA and siRNA Panels for LBP  
                     Sigma-Aldrich shRNA for LBP  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for LBP
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004139
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004139
                                 untagged cDNA clone in CMV expression vector: NM_004139 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_004139

UniProtKB/Swiss-Prot: LBP_HUMAN, P18428
Function: Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present
in the outer membrane of all Gram-negative bacteria. The LBP/LPS complex seems to interact with
the CD14 receptor

Genatlas biochemistry entry for LBP:
lipopolysaccharide,acute-phase protein specifically binding to the lipid A moiety of liposaceharide
(LPS,endotoxin) from the cell wall of Gram- bacteria binding protein,and directing it to the CD14
receptor mainly expressed by phagocytes

1 MGI mutant phenotype (inferred from 2 alleles(MGI details for Lbp):

immune system

5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001530 lipopolysaccharide binding IEA--
GO:0005102 receptor binding ISS2477488
GO:0008289 lipid binding IEA--
GO:0043498 cell surface binding ISS2477488
GO:0051636 Gram-negative bacterial cell surface binding ISS2402637
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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3 Millipore Pathways for LBP
 Transcription NF-kB signaling pathway
 Immune response Toll-like receptor (TLR) ligands and common TLR signaling pathway leading to cell proinflammatory response
 Immune response MIF in innate immunity response

   GeneDecks  LBP for the pathways selected above  
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5/10 Sigma-Aldrich "Your Favorite Gene" Pathways for  LBP  (Your Favorite Gene powered by Ingenuity) (see all 10
 LXR/RXR Activation
 Acute Phase Response Signaling
 Actin Cytoskeleton Signaling
 LPS-stimulated MAPK Signaling
 Hepatic Cholestasis

   GeneDecks  LBP for the pathways selected above  
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1 Kegg Pathway  (Kegg details for LBP):
 hsa04620 Toll-like receptor signaling pathway

   GeneDecks  LBP for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  LBP 


5/13 Interacting proteins for LBP (ENSP000002174073) via UniProtKB, MINT, and/or STRING (see all 13 )
InteractantInteraction Details
GeneCardExternal ID(s)
CD14ENSP000003042363STRING (score=.995)
IL6ENSP000002587433STRING (score=.961)
STAT3ENSP000002646573STRING (score=.932)
FOSENSP000003062453STRING (score=.899)
TLR4ENSP000003630893STRING (score=.831)
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5/19 Gene Ontology (GO) biological process terms (links to tree view) (see all 19 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0002281 macrophage activation during immune response ISS2402637
GO:0006869 lipid transport IEA--
GO:0006953 acute-phase response ISS2477488
GO:0006968 cellular defense response ISS2402637
GO:0008228 opsonization ISS2477488
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for LBP
10/25 Novoseek chemical compound relationships for LBP gene (see all 25 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
endotoxin 85.52 147 14733729 (5), 17206721 (5), 10515819 (4), 8704115 (4) (see all 69)
lipoteichoic acid 69.49 32 12594207 (4), 16928689 (4), 9925653 (2), 11828371 (2) (see all 8)
phospholipid 50.63 42 8985160 (2), 9103463 (2), 10768924 (2), 15784577 (2) (see all 26)
monophosphoryl lipid a 43.46 3 17254389 (1), 7515085 (1)
peptidoglycan 37.77 4 15294986 (1), 8051139 (1), 11705912 (1)
lipid 30.45 34 7536794 (3), 16303759 (3), 9441745 (2), 10607703 (2) (see all 19)
fibrinogen 25.45 11 10607703 (3), 9715256 (1), 18277064 (1), 17081803 (1) (see all 7)
il 10 23.86 1 16050543 (1)
glycolipid 23.48 2 9568897 (1)
polysulfone 18.17 1 7507806 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (LBP)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004139

              Sigma-Aldrich siRNA and siRNA Panels for LBP  
                     Sigma-Aldrich shRNA for LBP  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_004139  

REFSEQ mRNAs for LBP gene: 

NM_004139.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_004139  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004139
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004139
                                 untagged cDNA clone in CMV expression vector: NM_004139 

Additional cDNA sequence: 

AF105067.1 AK313625.1 AY344471.1 BC022256.1 CR592006.1 CR606921.1 CR613938.1 CR621941.1 
M35533.1 

2 DOTS entries:

DT.110781  DT.100776620 

24/59 AceView cDNA sequences (see all 59 ):

NM_004139 CA489550 CR621941 BX406391 AV658726 CB164493 BG618841 CR592006 
BX325221 CB163947 CR606921 CR613938 R29149 T61393 BG618594 BX405350 
BQ669569 AL531909 BX423833 AL708488 AL557972 BI763303 CB161731 CB162798 

highest scoring ESTs for LBP:

AF105067 AL531908 AL557972 AW193105 AW953660 BG567007 BI762328 BQ028088 BX108847 BX325220 

Unigene Cluster for LBP:

Lipopolysaccharide binding protein
Hs.154078  [show with all ESTs]
Unigene Representative Sequence: NM_004139


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000217407  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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LBP expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for LBP

1 / 2 / 3

5 probe-sets matching LBP gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
35013_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AF013512 0.20 1.00 0.72 1

214461_at2, 3 U133-A 1 1.00 1.00 -- -- NM_004139 0.60 1.00 0.82 1

211652_s_at2, 3 U133-A 1 1.00 1.00 -- -- M35533 0.60 1.00 0.82 1

214461_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

211652_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  LBP for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: AACCTGGAAC

SOURCE GeneReport for Unigene cluster: Hs.154078

Expression variation in blood from EXPOLDB for LBP

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for LBP gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
LBP1   -- lipopolysaccharide binding protein 83.91(n)
79.8(a)
485869  XM_542993.2  XP_542993.2 
chimpanzee
(Pan troglodytes)
LBP1   -- lipopolysaccharide binding protein 98.71(n)
97.54(a)
458239  XM_514638.2  XP_514638.2 
cow
(Bos taurus)
LBP1   -- lipopolysaccharide binding protein 80.59(n)
75.11(a)
512242  NM_001038674.1  NP_001033763.1 
rat
(Rattus norvegicus)
Lbp1   -- lipopolysaccharide binding protein 75.82(n)
68.51(a)
29469  NM_017208.1  NP_058904.1 
mouse
(Mus musculus)
Lbp1, 5 2 (83.00 cM)5
lipopolysaccharide binding protein1, 5 76.02(n)1
68.14(a)1
168031  NM_008489.21  NP_032515.21 
 AA2074195  AI6438815  (see all 17)
About this table        Species with no ortholog for LBP

ENSEMBL Gene Tree for LBP
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for LBP gene
BPIL22  PLTP2  BPI2  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/385 NCBI SNPs in LBP are shown (see all 385 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 145)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 20 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs22326181,2
A,C,F,H36435175(+) ACACCT/CTCTAC 1 L/F mis1 ese315Minor allele frequency- C:0.10NA EU EA WA 1102
--
rs57418121,2
A,C,F,H36407413(+) TCATGA/TCTCCT 1 -- ng5114Minor allele frequency- T:0.28NA EU EA WA 1010
rs22325781,2
A,C,F,H36408129(+) GATCTA/GGGCAG 1 -- ng5111Minor allele frequency- G:0.19EA NA EU WA 2092
rs22326071,2
C,F,H,O36426747(+) CTCGGA/GTTATG 1 D/G mis1 ese314Minor allele frequency- G:0.00EU EA WA NA 1024
rs22325711,2
A,C,F,H36407498(+) GCCATT/CGGAAA 1 -- ng5118Minor allele frequency- C:0.21NA EU EA WA 1228
rs17806171,2
A,C,F,H36407571(+) AAGggA/Gcatgt 1 -- ng5121Minor allele frequency- G:0.25NA EA EU MN WA 1704
rs17806161,2
A,C,F,H36406356(+) CAATTC/TCTGCT 1 -- ng5110Minor allele frequency- T:0.39NA EU EA WA 606
rs22325731,2
A,C,F,H36407708(+) atgtaT/Cttaag 1 -- ng5110Minor allele frequency- C:0.08NA EU EA WA 596
rs22326151,2
C,F,H36431162(+) GGAGAT/CAGATG 1 T/I mis14Minor allele frequency- C:0.01EU EA WA 406
rs22325801,2
C,F,H36408359(+) CCTGCC/TGTCCA 1 P/L mis1 ese312Minor allele frequency- A:0.01EU EA WA NA 1002
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HapMap Linkage Disequilibrium images for LBP (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 151990

10/47 Novoseek disease relationships for LBP gene (see all 47 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
response acute phase 74.09 37 8668165 (2), 8588345 (2), 8021509 (2), 9442384 (2) (see all 18)
shock septic 73.94 18 14624690 (3), 7963737 (2), 11739189 (2), 1284855 (1) (see all 11)
gram-negative bacterial infections 72.03 4 8432532 (1), 9380744 (1), 7678583 (1), 7504510 (1)
sepsis 67.13 101 11373419 (5), 18552695 (5), 16512634 (5), 16569262 (4) (see all 35)
systemic inflammatory response syndrome 65.76 12 18552695 (2), 16569262 (1), 16875458 (1), 7538550 (1) (see all 8)
necrosis 59.10 42 7685250 (2), 1281827 (1), 7543094 (1), 7562749 (1) (see all 37)
inflammation 43.66 25 7562749 (2), 17601541 (2), 8418776 (2), 11605136 (1) (see all 17)
nasal epithelium 43.61 2 12427544 (1)
bacterial infections 42.80 14 9360683 (2), 16407966 (2), 17259880 (2), 17328727 (1) (see all 9)
hepatitis alcoholic 42.34 2 10803780 (1)
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Genetic Association Database: LBP
Human Genome Epidemiology Navigator: LBP (18 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/393 PubMed articles for LBP gene (see all 393 ):
(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 3929 HGNC: 6517 AceView: LBP Ensembl:ENSG00000129988 euGenes: HUgn3929
ECgene: LBP H-InvDB: LBP
(According to HUGE)
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  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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  --
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for LBP:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for LBP Antibodies for LBP
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for LBP Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Antibodies for LBP

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