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Aliases & Descriptions for LAT
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases LAT1 1 , 2 p36-38 3 pp36 2 , 3
Descriptions 36 kDa phospho-tyrosine adapter protein 3 36 kDa phospho-tyrosine adaptor protein 2 linker for activation of T cells 2
Search outside databases for aliases for LAT genePrevious GC identifers: GC16P079421 GC16P029319 GC16P028994 GC16P029033 GC16P029034
Summaries for LAT (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LAT : The protein encoded by this gene is phosphorylated by ZAP-70/Syk protein tyrosine kinases followingactivation of the T-cell antigen receptor (TCR) signal transduction pathway. This transmembraneprotein localizes to lipid rafts and acts as a docking site for SH2 domain-containing proteins.Upon phosphorylation, this protein recruits multiple adaptor proteins and downstream signalingmolecules into multimolecular signaling complexes located near the site of TCR engagement.Alternative splicing results in multiple transcript variants encoding different isoforms.[provided by RefSeq] UniProtKB/Swiss-Prot: LAT_HUMAN, O43561 Function : Required for TCR (T-cell antigen receptor)- and pre-TCR-mediated signaling, both inmature T-cells and during their development. Involved in FCGR3 (low affinity immunoglobulin gammaFc region receptor III)-mediated signaling in natural killer cells and FCER1 (high affinityimmunoglobulin epsilon receptor)-mediated signaling in mast cells. Couples activation of thesereceptors and their associated kinases with distal intracellular events such as mobilization ofintracellular calcium stores, PKC activation, MAPK activation or cytoskeletal reorganizationthrough the recruitment of PLCG1, GRB2, GRAP2, and other signaling molecules
Gene Wiki entry for LAT (Linker_of_activated_T_cells)
Genomic Location for LAT
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LAT gene Entrez Gene cytogenetic band: 16p11.2 Ensembl cytogenetic band: 16p11.2 HGNC cytogenetic band: 16q13 LAT Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P028903:
(about GC identifiers )
Start:
28,903,648 bp from pter
End:
28,909,605 bp from pter
Size:
5,958 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000016.8 NT_010393.15 Proteins for LAT
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LAT_HUMAN, O43561 (See
protein sequence )Recommended Name: Linker for activation of T-cells family member 1 Size : 262 amino acids; 27930 Da
Subunit : When phosphorylated, interacts directly with the PIK3R1 subunit of phosphoinositide3-kinase and the SH2 domains of GRB2, GRAP, GRAP2, PLCG1 and PLCG2. Interacts indirectly with CBL,SOS, VAV, and LCP2. Interacts with SHB, SKAP2 and CLNK (By similarity). Interacts with FCGR1A
Subcellular location : Cell membrane; Single-pass type III membrane protein. Note=Present in lipidrafts
Miscellaneous : Engagement of killer inhibitory receptors (KIR) disrupts the interaction of PLCG1with LAT and blocks target cell-induced activation of PLC, maybe by inducing the dephosphorylationof LAT
Secondary accessions : O43919Alternative splicing : 2 isoforms : O43561-1 O43561-2
Post-translational modifications:
Phosphorylated on tyrosines by ZAP-70 upon TCR activation, or by SYK upon other immunoreceptoractivation; which leads to the recruitment of multiple signaling molecules. Is one of the mostprominently tyrosine-phosphorylated proteins detected following TCR engagement1
Palmitoylation of Cys-26 and Cys-29 is required for raft targeting and efficient phosphorylation1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001014987.1 NP_001014988.1 NP_001014989.1 NP_055202.1 ENSEMBL proteins: ENSP00000354119 ENSP00000378845 ENSP00000346441 ENSP00000378841 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for LAT: Invitrogen Antibodies for LAT Millipore Mono- and Polyclonal Antibodies for the study of LAT Sigma-Aldrich Antibodies for LAT
Browse R&D Systems for Antibodies Cell Signaling Technology (CST) Antibodies for LAT   Antibodies from Abcam (LAT ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (LAT ) Novus Biologicals Antibodies for LAT
Assays for LAT:
Protein
Domains/ Families for LAT(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O43561 ProtoNet protein and cluster: O43561
1 Blocks protein family : IPB008359 Linker for activation of T cells (LAT) signature Gene Function for LAT
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
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Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (LAT ) Millipore RNAi Products for the Analysis of LAT Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (LAT )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_014387 Applied Biosystems Silencer ® siRNAs for LAT Sigma-Aldrich siRNA for LAT Sigma-Aldrich shRNA Panels and shRNA for LAT Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_014387 UniProtKB/Swiss-Prot: LAT_HUMAN, O43561 Function : Required for TCR (T-cell antigen receptor)- and pre-TCR-mediated signaling, both inmature T-cells and during their development. Involved in FCGR3 (low affinity immunoglobulin gammaFc region receptor III)-mediated signaling in natural killer cells and FCER1 (high affinityimmunoglobulin epsilon receptor)-mediated signaling in mast cells. Couples activation of thesereceptors and their associated kinases with distal intracellular events such as mobilization ofintracellular calcium stores, PKC activation, MAPK activation or cytoskeletal reorganizationthrough the recruitment of PLCG1, GRB2, GRAP2, and other signaling molecules
8 MGI mutant phenotypes (inferred from 12 alleles ) (MGI details for Lat) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for LAT
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for LAT (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for LAT 5/11 Interacting proteins for LAT (O43561 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 11
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for LAT (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LAT 6 Novoseek chemical compound relationships for LAT gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pp36
92.74
4
9541596 (2), 8063801 (1), 7561087 (1)
tyrosine
62.12
30
11368773 (4), 12186560 (4), 9541596 (1), 11752630 (1) (see all 14 )
phosphatidylinositol
41.86
1
12359715 (1)
lipid
26.16
5
12356870 (1), 17148460 (1), 12186560 (1), 12359715 (1) (see all 5 )
phenylalanine
21.08
3
11368773 (1), 12186560 (1)
calcium
8.65
2
12356870 (1), 10934198 (1)
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Transcripts for LAT(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (LAT ) Millipore RNAi Products for the Analysis of LAT Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (LAT )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_014387 Sigma-Aldrich siRNA for LAT Sigma-Aldrich shRNA Panels and shRNA for LAT Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001014987 NM_001014988 NM_001014989 NM_014387
REFSEQ mRNAs for LAT gene (4 alternative transcripts): NM_001014987.1 NM_001014988.1 NM_001014989.1 NM_014387.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001014987 NM_001014988 NM_001014989 NM_014387
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001014987  
Additional cDNA sequence: AF036905.1 AF036906.1 AJ223280.1 AK093815.1 AK307342.1 BC011563.1 CR592470.1 CR597721.1 CR602091.1 CR624409.1
14 DOTS entries : DT.212803 DT.97821383 DT.91813625 DT.120697691 DT.86846602 DT.95279632 DT.120697773 DT.212804 DT.92422795 DT.100646119 DT.100837133 DT.86847375 DT.92422794 DT.120696242
24/100 AceView cDNA sequences (see all 100
):AI093373 CR597721 AW296085 AJ223280 CA433887 AW137801 CR592470 BQ549485 BX107839 BX437371 CR624409 BQ072651 BQ581351 BM682360 CA426247 BC011563 AW474918 AI224538 CK902086 CR602091 BE463927 BM715456 BM717829 CB160324
highest scoring ESTs for LAT :AJ223280 AA311132 AA535611 AA628009 AA655020 AA773038 AA987807 AI093373 AI224538 AI288988
Unigene Cluster for LAT: Linker for activation of T cells Hs.632179 [show with all ESTs ] Unigene Representative Sequence: AK093815 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000360872
ENST00000395461
ENST00000354453
ENST00000395456
Expression for LAT
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LAT expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LAT 1 / 2 / 3
5 probe-sets matching LAT gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGGGCTCAGCSOURCE GeneReport for Unigene cluster: Hs.632179 Expression variation in blood from EXPOLDB for LAT
UniProtKB/Swiss-Prot: LAT_HUMAN, O43561 Tissue specificity : Expressed in thymus, T-cells, NK cells, mast cells and, at lower levels, inspleen. Present in T-cells but not B-cells (at protein level)
Orthologs for LAT
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LAT gene from 5 species
About this table Species with no ortholog for LAT ENSEMBL Gene Tree for LAT Paralogs for LAT (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for LAT (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LAT (up to first 250kb)
Disorders & Mutations for LAT
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602354 1 Novoseek disease relationship for LAT gene
About this table 1 PharmGKB disease relationship for LAT gene About this table Human Gene Mutation Database : LAT Human Genome Epidemiology Navigator: LAT (4 documents)
Medical News for LAT (Possibly Related Articles in
Doctor's Guide )
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Publications for LAT (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/101 PubMed articles for LAT gene (see all 101
): LAT: the ZAP-70 tyrosine kinase substrate that links T cell receptor to cellular activation. (PubMed id 9489702) 2, 3, 4 Zhang W.... Samelson L.E. (1998) Mapping the Zap-70 phosphorylation sites on LAT (linker for activation of T cells) required for recruitment and activation of signalling proteins in T cells. (PubMed id 11368773) 1, 3, 4 Paz P.E.... Abo A. (2001) Transmembrane adaptor molecules: a new category of lymphoid-cell markers. (PubMed id 16160011) 3, 4 Tedoldi S....Horejsi V. (2006) LAT: a T lymphocyte adapter protein that couples the antigen receptor to downstream signaling pathways. (PubMed id 14696041) 3, 4 Sommers C.L.... Love P.E. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Interaction of linker for activation of T cells with multiple adapter proteins in platelets activated by the glycoprotein VI-selective ligand, convulxin. (PubMed id 10942756) 3, 4 Asazuma N.... Watson S.P. (2000) The adapter protein LAT enhances fcgamma receptor-mediated signal transduction in myeloid cells. (PubMed id 10781611) 3, 4 Tridandapani S....Anderson C.L. (2000) Association of Grb2, Gads, and phospholipase C-gamma 1 with phosphorylated LAT tyrosine residues. Effect of LAT tyrosine mutations on T cell angigen receptor-mediated signaling. (PubMed id 10811803) 3, 4 Zhang W.... Samelson L.E. (2000) A role for the adaptor protein LAT in human NK cell-mediated cytotoxicity. (PubMed id 10072481) 3, 4 Jevremovic D.... Leibson P.J. (1999) Requirement of the Src homology 2 domain protein Shb for T cell receptor-dependent activation of the interleukin-2 gene nuclear factor for activation of T cells element in Jurkat T cells. (PubMed id 10488157) 3, 4 Lindholm C.K.... Welsh M. (1999)
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Genome Databases showing LAT
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LAT
(According to HUGE )
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Specialized Databases showing LAT (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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