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LASS2 Gene

protein-coding   GIFtS: 56

GC01M149204
LAG1 homolog, ceramide synthase 2
(Previous names: longevity assurance (LAG1, S. cerevisiae) homolog 2, LAG1 longevity assurance homolog 2 (S. cerevisiae) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
CerS2 1, 2
FLJ10243 1, 2
L3 1, 2
MGC987 2
OTTHUMP00000033028 2
SP260 1, 2, 3
TMSG1 2, 3
Descriptions
LAG1 homolog, ceramide synthase 2 2
LAG1 longevity assurance 2 2
LAG1 longevity assurance homolog 2 (S. cerevisiae) 1
Tumor metastasis-suppressor gene 1 protein 3
ceramide synthase 2 2
longevity assurance (LAG1, S. cerevisiae) homolog 2 1, 2
tumor metastasis-suppressor 2
External Ids
HGNC: 140761
Entrez Gene: 299562
UniProtKB: Q96G233
Ensembl: ENSG000001434187
Search outside databases for aliases for LASS2 gene

Previous GC identifers: GC01M148779 GC01M146684 GC01M147708 GC01M148154 GC01M147750

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for LASS2:
This gene encodes a protein that has sequence similarity to yeast longevity assurance gene 1.
Mutation or overexpression of the related gene in yeast has been shown to alter yeast lifespan.
The human protein may play a role in the regulation of cell growth. Alternatively spliced
transcript variants encoding the same protein have been described. [provided by RefSeq]

UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23
Function: Suppresses the growth of cancer cells. May be involved in sphingolipid synthesis

Gene Wiki entry for LASS2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the LASS2 gene  

Entrez Gene cytogenetic band: 1q21.2   Ensembl cytogenetic band:  1q21.2   HGNC cytogenetic band: 1p36.13-q24.1

LASS2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M149204:     (about GC identifiers)

Start:
149,204,273 bp from pter
End:
149,214,064 bp from pter
Size:
9,792 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000001.9  NT_004487.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 (See protein sequence)
Recommended Name: LAG1 longevity assurance homolog 2  
Size: 380 amino acids; 44876 Da
Subunit: Interacts with ATP6V0C, ASGR1, ASGR2 and SLC22A1/OCT1
Subcellular location: Nucleus membrane; Multi-pass membrane protein (Potential). Endoplasmic
reticulum membrane; Multi-pass membrane protein (By similarity)
Secondary accessions: Q9HD96 Q9NW79

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_071358.1  NP_859530.1  


    ENSEMBL proteins: 
    ENSP00000357945 ENSP00000271688 ENSP00000357950 ENSP00000355020 ENSP00000337842 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (LASS2)
    Human Recombinant Proteins from Abnova (LASS2)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    GO:0005783 endoplasmic reticulum IEA--
    GO:0005789 endoplasmic reticulum membrane IEA--
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    Antibodies for LASS2: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for LASS2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (LASS2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (LASS2)
    Novus Biologicals Antibodies for LASS2

    Assays for LASS2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR016439 Longevity_assurance_LAG1_LAC1
     IPR001356 Homeobox
     IPR017970 Homeobox_CS
     IPR006634 TLC


       GeneDecks  LASS2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q96G23

    ProtoNet protein and cluster: Q96G23

    2 Blocks protein families:
    IPB005547 Longevity-assurance protein (LAG1)
    IPB006634 TRAM


    UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23
    Similarity: Contains 1 homeobox DNA-binding domain
    Similarity: Contains 1 TLC (TRAM/LAG1/CLN8) domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (LASS2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (LASS2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_022075

                  Applied Biosystems Silencer® siRNAs for LASS2

                  Sigma-Aldrich siRNA for LASS2  
                         Sigma-Aldrich shRNA for LASS2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for LASS2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_022075
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_022075
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_013384 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_022075

    UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23
    Function: Suppresses the growth of cancer cells. May be involved in sphingolipid synthesis

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity IEA--
    GO:0005515 protein binding IPI11543633 17353931
    GO:0043565 sequence-specific DNA binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  LASS2  (Your Favorite Gene powered by Ingenuity) 
     Sphingolipid Metabolism

       GeneDecks  LASS2 for the pathways selected above  
    About GeneDecksing


    5/6 Interacting proteins for LASS2 (ENSP000003579453 Q96G231) via UniProtKB, MINT, and/or STRING (see all 6 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ASGR1P073061STRING (score=.844) EBI-1057080, EBI-1172335
    ASGR2P073071STRING (score=.851) EBI-1057080, EBI-1172636
    ATP6V0CP274491STRING (score=.879) EBI-1057080, EBI-721179
    SLC22A1O152451STRING (score=.828) EBI-1057080, EBI-1172714
    NDNQ996081EBI-1057080, EBI-718177
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0008610 lipid biosynthetic process IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for LASS2
    1 Novoseek chemical compound relationship for LASS2 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    maleimide 80.78 2 15796876 (1), 15672611 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (LASS2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (LASS2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_022075

                  Sigma-Aldrich siRNA for LASS2  
                         Sigma-Aldrich shRNA for LASS2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_022075  NM_181746  

    REFSEQ mRNAs for LASS2 gene (2 alternative transcripts): 

    NM_022075.3   NM_181746.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_022075  NM_181746  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_022075
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_022075
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_013384 

    Additional cDNA sequence: 

    AF177338.2 AF189062.4 AK001105.1 AK290989.1 AY091458.1 BC001357.2 BC010032.2 

    23 DOTS entries:

    DT.95266941  DT.91758853  DT.100835331  DT.97860965  DT.100835330  DT.95125678  DT.121452948  DT.121453027 
    DT.95266953  DT.121453035  DT.121452946  DT.91758855  DT.100708569  DT.100835334  DT.100835339  DT.121452942 
    DT.121453018  DT.95257627  DT.100792734  DT.100792739  DT.313478  DT.95093003  DT.97859023 

    24/480 AceView cDNA sequences (see all 480 ):

    BM744561 BQ233443 CA449459 W39754 BI757217 BI028067 W76578 BM907435 
    AL711029 AL554049 CB156094 BE272613 AL537627 AU120413 BE162717 BX360205 
    CA392778 CD106460 BU164844 BM472770 BM451302 CD675166 AA345236 BQ673270 

    highest scoring ESTs for LASS2:

    AF177338 AK001105 AL046139 AL554049 AL562208 AL711029 AU120413 AW674778 AW675095 AY091458 

    Unigene Cluster for LASS2:

    LAG1 homolog, ceramide synthase 2
    Hs.713103  [show with all ESTs]
    Unigene Representative Sequence: NM_181746


    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for LASS2 (see all 12 )

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a ·
    SP1:                    -     -     -     -     -                                                     -                 -                 -                     
    SP2:                    -     -     -     -     -     -                                               -                 -                 -                     
    SP3:                                      -     -                                                     -                 -                 -                     
    SP4:                    -     -     -     -                                                           -                 -                                       
    SP5:                                -     -     -                                                     -                                                         

    ExUns: 12b ^ 13a · 13b · 13c ^ 14 ^ 15
    SP1:                                    
    SP2:                                    
    SP3:                                    
    SP4:                                    
    SP5:                                    

    About this scheme

    ECgene alternative splicing isoforms for LASS2

    5 Ensembl transcripts including schematic representations:
    ENST00000368949  ENST00000271688  ENST00000368954  ENST00000361419  ENST00000345896  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    LASS2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for LASS2

    1 / 2 / 3

    3 probe-sets matching LASS2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    56446_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AL046139 0.80 1.00 0.91 1

    222212_s_at2, 3 U133-A 1 1.00 1.00 -- -- AK001105 0.80 1.00 0.91 1

    222212_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GCAATAAGTG

    SOURCE GeneReport for Unigene cluster: Hs.713103

    UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23
    Tissue specificity: Expressed in kidney, liver, brain, heart, placenta and lung

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for LASS2 gene from 5/9 species (see all 9 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    LASS21   -- LAG1 homolog, ceramide synthase 2 92.54(n)
    97.63(a)
    483187  XM_540305.2  XP_540305.1 
    chimpanzee
    (Pan troglodytes)
    LASS21   -- LAG1 homolog, ceramide synthase 2 99.82(n)
    100(a)
    469482  XM_524865.2  XP_524865.2 
    cow
    (Bos taurus)
    LASS21   -- LAG1 homolog, ceramide synthase 2 93.33(n)
    96.05(a)
    539223  NM_001034667.1  NP_001029839.1 
    rat
    (Rattus norvegicus)
    Lass21   -- LAG1 homolog, ceramide synthase 2 87.67(n)
    89.6(a)
    310667  NM_001033700.1  NP_001028872.1 
    mouse
    (Mus musculus)
    Lass21, 5 35
    LAG1 homolog, ceramide synthase 21, 5 90.88(n)1
    92.37(a)1
    768931  NM_029789.11  NP_084065.11 
     AI2259395  AK0026265  (see all 16)
    About this table        Species with no ortholog for LASS2

    ENSEMBL Gene Tree for LASS2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for LASS2 gene
    LASS32  LASS42  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/70 NCBI SNPs in LASS2 are shown (see all 70 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 54)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 1 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs84441,2
    A,C,F,H,O149205195(-) TACCCC/TGCTCC 2 -- ut31 ese39Minor allele frequency- T:0.36MN NA EU EA WA 932
    rs2677381,2
    C,F,H149207249(-) GGTAGA/CGCGTT 2 E/A mis112Minor allele frequency- C:0.09EU EA WA 1258
    rs75508091,2
    C,F,H149205005(+) TTGGCG/AGGTAG 2 -- ut31 ese35Minor allele frequency- A:0.04MN EU EA WA 592
    --
    rs85441,2
    A,C,F149204395(-) tttttT/Aaaaat 2 -- ut314Minor allele frequency- A:0.01MN NA 314
    rs2677391,2
    C,F,H149205240(-) CATTAT/CTCCAG 2 -- ut31 ese311Minor allele frequency- C:0.02NA EU EA WA 974
    rs94360171,2
    H149204442(+) CCTCTG/ACTGAA 2 -- ut31 ese34Minor allele frequency- A:0.00EU EA WA 420
    rs37680101,2
    H149204974(-) TGAGGC/GCCTCC 2 -- ut31 ese35Minor allele frequency- G:0.01EA EU WA 1730
    --
    rs2677351,2
    A149215120(-) tttttA/Taattt 2 -- ng310--------
    rs94359541,2
    F,H149205942(+) CCCGCG/ATAGTT 2 Y/Y syn1 ese34Minor allele frequency- A:0.03EU EA WA 420
    rs7523761,2
    A,C,F,H149208005(+) GTAGGC/TTGGCA 2 -- int14Minor allele frequency- T:0.49EU EA WA 412
    About this table

    HapMap Linkage Disequilibrium images for LASS2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 606920

    3 Novoseek disease relationships for LASS2 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    metastasis 27.76 10 18759044 (3), 15672611 (3), 15796876 (1)
    cancer 12.84 5 15672611 (2), 15796876 (1)
    tumors 5.82 14 15796876 (3), 18759044 (3), 15672611 (3)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/19 PubMed articles for LASS2 gene (see all 19 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 29956 HGNC: 14076 AceView: LASS2 Ensembl:ENSG00000143418 euGenes: HUgn29956
    ECgene: LASS2 H-InvDB: LASS2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for LASS2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
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      Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for LASS2-related products

     Millipore Custom Antibody & Bulk Services
     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for LASS2 Antibodies for LASS2
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for LASS2 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Antibodies for LASS2

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    LASS2 Gene at Home site.
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