LASS2 Gene
protein-coding GIFtS : 56
GC01M149204
LAG1 homolog, ceramide synthase 2 (Previous names: longevity assurance (LAG1, S. cerevisiae) homolog 2, LAG1 longevity assurance homolog 2 (S. cerevisiae) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for LASS2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CerS2 1 , 2 FLJ10243 1 , 2 L3 1 , 2 MGC987 2 OTTHUMP00000033028 2 SP260 1 , 2 , 3 TMSG1 2 , 3
Descriptions LAG1 homolog, ceramide synthase 2 2 LAG1 longevity assurance 2 2 LAG1 longevity assurance homolog 2 (S. cerevisiae) 1 Tumor metastasis-suppressor gene 1 protein 3 ceramide synthase 2 2 longevity assurance (LAG1, S. cerevisiae) homolog 2 1 , 2 tumor metastasis-suppressor 2
Search outside databases for aliases for LASS2 genePrevious GC identifers: GC01M148779 GC01M146684 GC01M147708 GC01M148154 GC01M147750
Summaries for LASS2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LASS2 : This gene encodes a protein that has sequence similarity to yeast longevity assurance gene 1.Mutation or overexpression of the related gene in yeast has been shown to alter yeast lifespan.The human protein may play a role in the regulation of cell growth. Alternatively splicedtranscript variants encoding the same protein have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 Function : Suppresses the growth of cancer cells. May be involved in sphingolipid synthesis
Gene Wiki entry for LASS2
Genomic Location for LASS2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LASS2 gene Entrez Gene cytogenetic band: 1q21.2 Ensembl cytogenetic band: 1q21.2 HGNC cytogenetic band: 1p36.13-q24.1 LASS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M149204:
(about GC identifiers )
Start:
149,204,273 bp from pter
End:
149,214,064 bp from pter
Size:
9,792 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for LASS2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 (See
protein sequence )Recommended Name: LAG1 longevity assurance homolog 2 Size : 380 amino acids; 44876 Da
Subunit : Interacts with ATP6V0C, ASGR1, ASGR2 and SLC22A1/OCT1
Subcellular location : Nucleus membrane; Multi-pass membrane protein (Potential). Endoplasmicreticulum membrane; Multi-pass membrane protein (By similarity)
Secondary accessions : Q9HD96 Q9NW79
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_071358.1 NP_859530.1 ENSEMBL proteins: ENSP00000357945 ENSP00000271688 ENSP00000357950 ENSP00000355020 ENSP00000337842 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for LASS2: Assays for LASS2:
Protein
Domains/ Families for LASS2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96G23 ProtoNet protein and cluster: Q96G23
2 Blocks protein families : IPB005547 Longevity-assurance protein (LAG1) IPB006634 TRAM UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 Similarity : Contains 1 homeobox DNA-binding domainSimilarity : Contains 1 TLC (TRAM/LAG1/CLN8) domain
Gene Function for LASS2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_022075 Applied Biosystems Silencer ® siRNAs for LASS2 Sigma-Aldrich siRNA for LASS2 Sigma-Aldrich shRNA for LASS2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_022075                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_022075                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_013384  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_022075 UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 Function : Suppresses the growth of cancer cells. May be involved in sphingolipid synthesis
3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for LASS2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for LASS2 (Your Favorite Gene powered by Ingenuity) 5/6 Interacting proteins for LASS2 (ENSP00000357945 3 Q96G23 1 ) via UniProtKB, MINT, and/or STRING (see all 6
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0008610 lipid biosynthetic process
IEA --
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Drugs & Compounds for LASS2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LASS2 1 Novoseek chemical compound relationship for LASS2 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
maleimide
80.78
2
15796876 (1), 15672611 (1)
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Transcripts for LASS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_022075 Sigma-Aldrich siRNA for LASS2 Sigma-Aldrich shRNA for LASS2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_022075 NM_181746
REFSEQ mRNAs for LASS2 gene (2 alternative transcripts): NM_022075.3 NM_181746.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_022075 NM_181746
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_022075                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_022075                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_013384  
Additional cDNA sequence: AF177338.2 AF189062.4 AK001105.1 AK290989.1 AY091458.1 BC001357.2 BC010032.2
23 DOTS entries : DT.95266941 DT.91758853 DT.100835331 DT.97860965 DT.100835330 DT.95125678 DT.121452948 DT.121453027 DT.95266953 DT.121453035 DT.121452946 DT.91758855 DT.100708569 DT.100835334 DT.100835339 DT.121452942 DT.121453018 DT.95257627 DT.100792734 DT.100792739 DT.313478 DT.95093003 DT.97859023
24/480 AceView cDNA sequences (see all 480
):BM744561 BQ233443 CA449459 W39754 BI757217 BI028067 W76578 BM907435 AL711029 AL554049 CB156094 BE272613 AL537627 AU120413 BE162717 BX360205 CA392778 CD106460 BU164844 BM472770 BM451302 CD675166 AA345236 BQ673270
highest scoring ESTs for LASS2 :AF177338 AK001105 AL046139 AL554049 AL562208 AL711029 AU120413 AW674778 AW675095 AY091458
Unigene Cluster for LASS2: LAG1 homolog, ceramide synthase 2 Hs.713103 [show with all ESTs ] Unigene Representative Sequence: NM_181746 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for LASS2 (see all 12
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · SP1 :       -   -   -   -   -                   -       -       -         SP2 :       -   -   -   -   -   -                 -       -       -         SP3 :             -   -                   -       -       -         SP4 :       -   -   -   -                     -       -               SP5 :           -   -   -                   -                    
ExUns: 12b ^ 13a · 13b · 13c ^ 14 ^ 15 SP1 :             SP2 :             SP3 :             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for LASS2 5 Ensembl transcripts including schematic representations : ENST00000368949
ENST00000271688
ENST00000368954
ENST00000361419
ENST00000345896
Expression for LASS2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LASS2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LASS2 1 / 2 / 3
3 probe-sets matching LASS2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCAATAAGTGSOURCE GeneReport for Unigene cluster: Hs.713103 UniProtKB/Swiss-Prot: LASS2_HUMAN, Q96G23 Tissue specificity : Expressed in kidney, liver, brain, heart, placenta and lung
Orthologs for LASS2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LASS2 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for LASS2 ENSEMBL Gene Tree for LASS2 Paralogs for LASS2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LASS2 gene LASS3 2 LASS4 2
SNPs/Variants for LASS2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LASS2 (up to first 250kb)
Disorders & Mutations for LASS2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606920 3 Novoseek disease relationships for LASS2 gene
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Medical News for LASS2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LASS2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/19 PubMed articles for LASS2 gene (see all 19
): Cloning, mapping, and characterization of a human homologue of the yeast longevity assurance gene LAG1. (PubMed id 11543633) 1, 2, 3, 4 Pan H....Gu J.-R. (2001) Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. (PubMed id 16263699) 3, 4 Lewandrowski U.... Sickmann A. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218) 4 Chen R.... Zou H. (2009) Characterization of ceramide synthase 2: tissue distribution, substrate specificity, and inhibition by sphingosine 1-phosphate. (PubMed id 18165233) 3 Laviad E.L....Futerman A.H. (2008) Phosphoproteome of resting human platelets. (PubMed id 18088087) 4 Zahedi R.P.... Sickmann A. (2008) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 4 Daub H.... Mann M. (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008)
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Genome Databases showing LASS2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LASS2
(According to HUGE )
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Specialized Databases showing LASS2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LASS2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LASS2:
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