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Aliases & Descriptions for LARS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 6.1.1.4 3 | | FLJ10595 1, 2 | | FLJ21788 1, 2 | | HSPC192 1, 2 | | KIAA1352 2, 3 | | LARS1 1, 2 | | LEURS 2 | | LEUS 1, 2 | | LRS 2 | | LeuRS 3 | | PIG44 2 | | RNTLS 1, 2 | | hr025Cl 2 |
| | | Descriptions |
|---|
| Leucine--tRNA ligase 3 | | cytoplasmic leucyl-tRNA synthetase 2 | | cytosolic leucyl-tRNA synthetase 2 | | leucine tRNA ligase 1, cytoplasmic 2 | | leucine translase 2 | | leucine-tRNA ligase 2 | | leucyl-tRNA synthetase 2 | | proliferation-inducing gene 44 2 |
|
| | Search outside databases for aliases for LARS genePrevious GC identifers: GC05M145468 GC05M146077 GC05M145521 |
Summaries for LARS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for LARS: This gene encodes a cytosolic leucine-tRNA synthetase, a member of the class I aminoacyl-tRNA synthetase family. The encoded enzyme catalyzes the ATP-dependent ligation of L-leucine to tRNA(Leu). It is found in the cytoplasm as part of a multisynthetase complex and interacts with the arginine tRNA synthetase through its C-terminal domain. Alternatively spliced transcript variants of this gene have been found; however, their full-length nature is not known. [provided by RefSeq] Gene Wiki entry for LARS (Leucyl-tRNA_synthetase) |
Genomic Location for LARS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the LARS gene 
Entrez Gene cytogenetic band: 5q32 Ensembl cytogenetic band: 5q32 HGNC cytogenetic band: 5q32LARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M145473:
(about GC identifiers)
Start:
|
145,472,782 bp from pter |
End:
|
145,549,064 bp from pter |
Size:
|
76,283 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_029289.10
| Proteins for LARS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SYLC_HUMAN, Q9P2J5 (See
protein sequence)Recommended Name: Leucyl-tRNA synthetase, cytoplasmic Size: 1176 amino acids; 134466 Da
Subcellular location: Cytoplasm (By similarity)
Secondary accessions: Q9NSE1Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_064502.9
ENSEMBL proteins: ENSP00000274562 ENSP00000354186 ENSP00000377954
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
IEA | -- | About this table
Antibodies for LARS: Assays for LARS: | Protein
Domains/ Families for LARS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9P2J5
ProtoNet protein and cluster: Q9P2J5 2 Blocks protein families: IPB002300 Aminoacyl-tRNA synthetase IPB002308 Cysteinyl-tRNA synthetase signature
UniProtKB/Swiss-Prot: SYLC_HUMAN, Q9P2J5Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family | Gene Function for LARS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020117
Applied Biosystems Silencer® siRNAs for LARS
Sigma-Aldrich siRNA for LARS  Sigma-Aldrich shRNA for LARS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020117                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020117                                  untagged cDNA clones in CMV expression vector (see all 4): AK095870 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020117
UniProtKB/Swiss-Prot: SYLC_HUMAN, Q9P2J5Catalytic activity: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)Enzyme Number (IUBMB): EC 6.1.1.4 Genatlas biochemistry entry for LARS:leucyl-tRNA synthetase4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for LARS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for LARS (Your Favorite Gene powered by Ingenuity) 
5/21 Interacting proteins for LARS (ENSP000002745623 Q9P2J52) via UniProtKB, MINT, and/or STRING (see all 21
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006429 | leucyl-tRNA aminoacylation |
IEA | -- | About this table
|
Drugs & Compounds for LARS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for LARS 5 Novoseek chemical compound relationships for LARS gene
About this table
|
Transcripts for LARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020117
Sigma-Aldrich siRNA for LARS  Sigma-Aldrich shRNA for LARS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_020117 REFSEQ mRNAs for LARS gene: NM_020117.9
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020117               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020117                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020117                                  untagged cDNA clones in CMV expression vector (see all 4): AK095870  Additional cDNA sequence: AB037773.1 AF151026.1 AK000277.1 AK001457.1 AK001682.1 AK021413.1 AK023777.1 AK025441.1 AK225372.1 AK293750.1 AK295874.1 AK304134.1 AK315178.1 AL390155.1 AY513284.1 AY926480.1 BC068041.1 BC105581.1 BC131798.1 BC150213.1 BC151214.1 BC152422.1 CR606937.1 D84223.1 U56252.1 24 DOTS entries: DT.95149473 DT.65285043 DT.95146494 DT.120813264 DT.120813337 DT.95296014 DT.100037988 DT.99933314 DT.95146476 DT.75197325 DT.91757819 DT.95089730 DT.100655627 DT.120813281 DT.91827412 DT.120813283 DT.120813289 DT.120813334 DT.75127701 DT.91757813 DT.91936592 DT.92343920 DT.91747506 DT.91809897 24/494 AceView cDNA sequences (see all 494
):AA374317 AW673539 BX097653 CB160346 CD105853 AL698713 AU116792 BX408269 BG029817 BQ317074 AK025441 BU162064 AA243123 AA227141 CB130448 BQ685471 AA838417 AL390155 CR606937 AU140364 CB105557 BM793410 CB106163 BE888467
highest scoring ESTs for LARS:AA216556 AA227350 AA355770 AA852565 AB037773 AF151026 AK025441 AL601728 AL698713 AL700021 Unigene Cluster for LARS: Leucyl-tRNA synthetase Hs.432674 [show with all ESTs]Unigene Representative Sequence: NM_020117
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for LARS (see all 8
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21a | · | 21b | ^ | 22 | ^ | 23a | · | 23b | ^ | |
| SP1: | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   |
| ExUns: | 24 | ^ | 25 | ^ | 26 | ^ | 27a | · | 27b | ^ | 28a | · | 28b | ^ | 29 | ^ | 30 | ^ | 31 | ^ | 32 | ^ | 33 | ^ | 34 | ^ | 35 | |
| SP1: | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for LARS
3 Ensembl transcripts including schematic representations: ENST00000274562
ENST00000360930
ENST00000394434
|
Expression for LARS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| LARS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for LARS
1 / 2 / 3 10 probe-sets matching LARS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TATTCATAAT
SOURCE GeneReport for Unigene cluster: Hs.432674
|
Orthologs for LARS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for LARS gene from 5/26 species (see all 26
)
About this table Species with no ortholog for LARS
ENSEMBL Gene Tree for LARS | Paralogs for LARS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for LARS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for LARS (up to first 250kb)
|
Disorders & Mutations for LARS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 151350
|
Medical News for LARS(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for LARS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/41 PubMed articles for LARS gene (see all 41
): |
Search for LARS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing LARS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing LARS
(According to HUGE)
About This Section
| |
Specialized Databases showing LARS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for LARS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for LARS:

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| | | | Search Tocris compounds for LARS |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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