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Aliases & Descriptions for LARGE
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.4.-.- 3 KIAA0609 1 , 2 , 3 , 5 LARGE1 3 MDC1D 2 , 5 OTTHUMP00000028624 2 like-glycosyltransferase 2
Descriptions Acetylglucosaminyltransferase-like 1A 2 , 3 acetylglucosaminyltransferase-like protein 2
Search outside databases for aliases for LARGE genePrevious GC identifer: GC22M030365
Summaries for LARGE (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LARGE : This gene, which is one of the largest in the human genome, encodes a member of theN-acetylglucosaminyltransferase gene family. It encodes a glycosyltransferase which participatesin glycosylation of alpha-dystroglycan, and may carry out the synthesis of glycoprotein andglycosphingolipid sugar chains. It may also be involved in the addition of a repeated disaccharideunit. Mutations in this gene cause MDC1D, a novel form of congenital muscular dystrophy withsevere mental retardation and abnormal glycosylation of alpha-dystroglycan. Alternative splicingof this gene results in two transcript variants that encode the same protein. [provided by RefSeq] UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 Function : Glycosyltransferase which participates in glycosylation of alpha-dystroglycan. May carryout the synthesis of glycoprotein and glycosphingolipid sugar chains. May be involved in theaddition of a repeated disaccharide unit
Gene Wiki entry for LARGE
Genomic Location for LARGE
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LARGE gene Entrez Gene cytogenetic band: 22q12.3 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q12.3 LARGE Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22M031993:
(about GC identifiers )
Start:
31,998,847 bp from pter
End:
32,646,410 bp from pter
Size:
647,564 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000022.9 NT_011520.11 Proteins for LARGE
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 (See
protein sequence )Recommended Name: Glycosyltransferase-like protein LARGE1 Size : 756 amino acids; 88066 Da
Subcellular location : Golgi apparatus membrane; Single-pass type II membrane protein
Secondary accessions : O60348 Q17R80 Q9UGD1 Q9UGE7 Q9UGG3 Q9UGZ8 Q9UH22Alternative splicing : 2 isoforms : O95461-1 O95461-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004728.1 NP_598397.1 ENSEMBL proteins: ENSP00000385223 ENSP00000336636 ENSP00000380549 ENSP00000347088 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for LARGE: Assays for LARGE:
Protein
Domains/ Families for LARGE(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O95461 ProtoNet protein and cluster: O95461
1 Blocks protein family : IPB002495 Glycosyl transferase UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 Similarity : Belongs to the glycosyltransferase 8 family
Gene Function for LARGE
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_133642 Applied Biosystems Silencer ® siRNAs for LARGE Sigma-Aldrich siRNA and siRNA Panels for LARGE Sigma-Aldrich shRNA for LARGE Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004737                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004737                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004737  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_133642 UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 Function : Glycosyltransferase which participates in glycosylation of alpha-dystroglycan. May carryout the synthesis of glycoprotein and glycosphingolipid sugar chains. May be involved in theaddition of a repeated disaccharide unit Enzyme Number (IUBMB): EC 2.4.-.-
Genatlas biochemistry entry for LARGE :large new member of the glycosyltransferase gene family,putative N-acetylglucosaminyltransferase,ubiquitously expressed,localized in the meningioma critical region,see also MN1
13 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Large) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008375 acetylglucosaminyltransferase activity
TAS 9892679 GO:0016757 transferase activity, transferring glycosyl groups
TAS 9892679
About this table
Pathways & Interactions for LARGE
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 Pathway : Protein modification; protein glycosylation
Gene Network CentralTM Interacting Genes and Proteins Network for LARGE 5/18 Interacting proteins for LARGE (ENSP00000347088 3 ) via UniProtKB, MINT, and/or STRING (see all 18
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for LARGE (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LARGE
Transcripts for LARGE(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_133642 Sigma-Aldrich siRNA and siRNA Panels for LARGE Sigma-Aldrich shRNA for LARGE Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004737 NM_133642
REFSEQ mRNAs for LARGE gene (2 alternative transcripts): NM_004737.4 NM_133642.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004737 NM_133642
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004737                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004737                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004737  
Additional cDNA sequence: AB011181.3 AJ007583.1 AK294766.1 AK295636.1 AK301808.1 AK310462.1 BC117425.1 BC126404.1 CR456510.1 CR607752.1 CR617639.1
10 DOTS entries : DT.100813135 DT.315705 DT.120629379 DT.100813136 DT.95329678 DT.120629265 DT.97763862 DT.433516 DT.75113844 DT.91805939
24/156 AceView cDNA sequences (see all 156
):AA908203 AA505335 AA653284 CR617639 CD619264 AW613918 BF445377 CR607752 H55069 AJ007583 H55386 BF110360 BQ233229 AW575461 AU123792 CR456510 BM699209 BQ900950 BX107803 BM558730 AI199334 BE218446 BQ680300 BE327169
highest scoring ESTs for LARGE :AJ007583 AI167885 AI198348 AI199197 AI933128 AW575461 BF057493 AB011181 AA001054 AA026587
Unigene Cluster for LARGE: Like-glycosyltransferase Hs.474667 [show with all ESTs ] Unigene Representative Sequence: AJ007583 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for LARGE (see all 7
) ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d · 8e ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 SP1 :     -   -       -   -   -                                   SP2 :     -   -   -     -   -   -                       -             SP3 :             -   -   -                                   SP4 :   -   -   -       -   -   -                                   SP5 :                                                  
About this scheme ECgene alternative splicing isoforms for LARGE 4 Ensembl transcripts including schematic representations : ENST00000402320
ENST00000337431
ENST00000397394
ENST00000354992
Expression for LARGE
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LARGE expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LARGE 1 / 2 / 3
5 probe-sets matching LARGE gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAAGCCCAGTSOURCE GeneReport for Unigene cluster: Hs.474667 Expression variation in blood from EXPOLDB for LARGE
UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461 Tissue specificity : Ubiquitous. Highest expression in heart, brain and skeletal muscle
Orthologs for LARGE
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LARGE gene from 5/10 species (see all 10
)
About this table Species with no ortholog for LARGE ENSEMBL Gene Tree for LARGE Paralogs for LARGE (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LARGE gene GYLTL1B 2 ENSG00000174684 2
SNPs/Variants for LARGE (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LARGE (up to first 250kb)
Disorders & Mutations for LARGE
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603590 disorders : 608840 236670 UniProtKB/Swiss-Prot: LARGE_HUMAN, O95461
Defects in LARGE are the cause of congenital muscular dystrophy type 1D (MDC1D)[MIM:608840]. The congenital muscular dystrophies (CMD) are a heterogeneous group of autosomalrecessive disorders presenting in infancy with muscle weakness, contractures, and dystrophicchanges on skeletal muscle biopsy. Structural brain defects, with or without mental retardation,are additional features of several CMD syndromes. MDC1D presented with congenital musculardystrophy, profound mental retardation, and white matter changes and subtle structuralabnormalities on brain MRI. Patient skeletal muscle biopsy showed reduced immunolabeling ofalpha-dystroglycan
7 Novoseek disease relationships for LARGE gene
About this table 1 PharmGKB disease relationship for LARGE gene About this table Human Gene Mutation Database : LARGE Human Genome Epidemiology Navigator: LARGE (3350 documents)
Medical News for LARGE (Possibly Related Articles in
Doctor's Guide )
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Publications for LARGE (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/43 PubMed articles for LARGE gene (see all 43
): The human LARGE gene from 22q12.3-q13.1 is a new, distinct member of the glycosyltransferase gene family. (PubMed id 9892679) 1, 2, 3, 4 Peyrard M.... Dumanski J.P. (1999) Mutations in the human LARGE gene cause MDC1D, a novel form of congenital muscular dystrophy with severe mental retardation and abnormal glycosylation of alpha-dystroglycan. (PubMed id 12966029) 1, 2, 3, 4 Longman C....Muntoni F. (2003) The DNA sequence of human chromosome 22. (PubMed id 10591208) 2, 3, 4 Dunham I....O'Brien K.P. (1999) Localization and functional analysis of the LARGE family of glycosyltransferases: significance for muscular dystrophy. (PubMed id 15661757) 1, 3, 4 Brockington M.... Muntoni F. (2005) LARGE2 facilitates the maturation of alpha-dystroglycan more effectively than LARGE. (PubMed id 15752776) 1, 3, 4 Fujimura K.... Narimatsu H. (2005) Characterization of the LARGE family of putative glycosyltransferases associated with dystroglycanopathies. (PubMed id 15958417) 3, 4 Grewal P.K....Hewitt J.E. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802) 3, 4 Collins J.E.... Dunham I. (2004) Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581) 3, 4 Nagase T....Ohara O. (1998) Intragenic deletion in the LARGE gene causes Walker-Warburg syndrome. (PubMed id 17436019) 1, 3 van Reeuwijk J....Voit T. (2007)
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Genome Databases showing LARGE
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LARGE
(According to HUGE )
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Specialized Databases showing LARGE (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for LARGE Genetics and Cytogenetics in Oncology and Haematology GeneReviews http://www.genetests.org/query?gene=LARGE GGDB http://riodb.ibase.aist.go.jp/rcmg/ggdb/ Functional Glycomics Gateway - GTase http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_549
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-- Services for LARGE (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LARGE:
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Incremental update: 13 Oct 2009