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Aliases & Descriptions for LAMC1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| LAMB2 2, 3, 5 | | MGC87297 2 | | OTTHUMP00000033450 2 |
| | | Descriptions |
|---|
| Laminin B2 chain 3 | | laminin, gamma 1 2 | | laminin, gamma 1 (formerly LAMB2) 2 |
|
| | Search outside databases for aliases for LAMC1 genePrevious GC identifers: GC01P180518 GC01P178420 GC01P179512 GC01P180231 GC01P179724 |
Summaries for LAMC1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for LAMC1: Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 1. The gamma 1 chain, formerly thought to be a beta chain, contains structural domains similar to beta chains, however, lacks the short alpha region separating domains I and II. The structural organization of this gene also suggested that it had diverged considerably from the beta chain genes. Embryos of transgenic mice in which both alleles of the gamma 1 chain gene were inactivated by homologous recombination, lacked basement membranes, indicating that laminin, gamma 1 chain is necessary for laminin heterotrimer assembly. It has been inferred by analogy with the strikingly similar 3' UTR sequence in mouse laminin gamma 1 cDNA, that multiple polyadenylation sites are utilized in human to generate the 2 different sized mRNAs (5.5 and 7.5 kb) seen on Northern analysis. [provided by RefSeq] UniProtKB/Swiss-Prot: LAMC1_HUMAN, P11047Function: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix componentsGene Wiki entry for LAMC1 (Laminin%2C_gamma_1) |
Genomic Location for LAMC1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the LAMC1 gene 
Entrez Gene cytogenetic band: 1q31 Ensembl cytogenetic band: 1q25.3 HGNC cytogenetic band: 1q31LAMC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P181259:
(about GC identifiers)
Start:
|
181,259,218 bp from pter |
End:
|
181,381,350 bp from pter |
Size:
|
122,133 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004487.18
| Proteins for LAMC1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: LAMC1_HUMAN, P11047 (See
protein sequence)Recommended Name: Laminin subunit gamma-1 precursor Size: 1609 amino acids; 177603 Da
Subunit: Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Gamma-1 is a subunit of laminin-1 (EHS laminin), laminin-2 (merosin), laminin-3 (S-laminin), laminin-4 (S-merosin), laminin-6 (K-laminin) and laminin-7 (KS-laminin)
Subcellular location: Secreted, extracellular space, extracellular matrix, basement membrane
Secondary accessions: Q5VYE7Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002284.3
ENSEMBL proteins: ENSP00000258341
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for LAMC1: Assays for LAMC1: | Protein
Domains/ Families for LAMC1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P11047
ProtoNet protein and cluster: P11047 3 Blocks protein families: IPB000034 Laminin B IPB002049 Laminin-type EGF-like domain IPB008212 Laminin
UniProtKB/Swiss-Prot: LAMC1_HUMAN, P11047Domain: The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structureDomain: Domains VI and IV are globularSimilarity: Contains 11 laminin EGF-like domainsSimilarity: Contains 1 laminin IV type A domainSimilarity: Contains 1 laminin N-terminal domain | Gene Function for LAMC1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002293
Applied Biosystems Silencer® siRNAs for LAMC1
Sigma-Aldrich siRNA for LAMC1  Sigma-Aldrich shRNA Panels and shRNA for LAMC1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002293                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002293                                  untagged cDNA clone in CMV expression vector: NM_002293 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002293
UniProtKB/Swiss-Prot: LAMC1_HUMAN, P11047Function: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix componentsGenatlas biochemistry entry for LAMC1:laminin,gamma 1 polypeptide,component of cutaneous basement membrane zone13 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Lamc1):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for LAMC1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for LAMC1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for LAMC1 
5/102 Interacting proteins for LAMC1 (ENSP000002583413 P110472) via UniProtKB, MINT, and/or STRING (see all 102
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for LAMC1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for LAMC1 1 Novoseek chemical compound relationship for LAMC1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| kalinin |
75.22 |
1 |
8306988 (1) |
About this table
|
Transcripts for LAMC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002293
Sigma-Aldrich siRNA for LAMC1  Sigma-Aldrich shRNA Panels and shRNA for LAMC1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002293 REFSEQ mRNAs for LAMC1 gene: NM_002293.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002293               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002293                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002293                                  untagged cDNA clone in CMV expression vector: NM_002293  Additional cDNA sequence: BC015586.2 BC035429.1 BC067813.1 CR593573.1 J03202.1 M27654.1 X13939.1 11 DOTS entries: DT.449842 DT.95149578 DT.101971664 DT.40234973 DT.100685117 DT.92452392 DT.100791165 DT.100791172 DT.101963075 DT.92452403 DT.95124002 24/476 AceView cDNA sequences (see all 476
):BF448018 AI754908 CA310056 CB216170 BF436491 CR593573 AI985158 CA424260 BM664886 CB215601 AW004971 BM562700 BM907557 BQ020657 AW069533 BU627391 BM748169 BM784122 H24649 CB143194 AI419268 AA022971 AA349553 BM993300
highest scoring ESTs for LAMC1:AA022903 AA022971 AA032191 AA035488 AA037120 AA069151 AA091063 AA091134 AA094916 AA131447 Unigene Cluster for LAMC1: Laminin, gamma 1 (formerly LAMB2) Hs.609663 [show with all ESTs]Unigene Representative Sequence: NM_002293
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000258341
|
Expression for LAMC1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| LAMC1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for LAMC1
1 / 2 / 3 5 probe-sets matching LAMC1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATTATAGAAT
SOURCE GeneReport for Unigene cluster: Hs.609663
Expression variation in blood from EXPOLDB for LAMC1 UniProtKB/Swiss-Prot: LAMC1_HUMAN, P11047Tissue specificity: Found in the basement membranes (major component) |
Orthologs for LAMC1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for LAMC1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for LAMC1
ENSEMBL Gene Tree for LAMC1 | Paralogs for LAMC1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for LAMC1 gene
- LAMC32
|
SNPs/Variants for LAMC1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for LAMC1 (up to first 250kb)
|
Disorders & Mutations for LAMC1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 150290 disorders: 176780 4 Novoseek disease relationships for LAMC1 gene
About this table
Human Gene Mutation Database: LAMC1 Genetic Association Database: LAMC1 Human Genome Epidemiology Navigator: LAMC1 (1 document)
|
Medical News for LAMC1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for LAMC1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/101 PubMed articles for LAMC1 gene (see all 101
):- Isolation of a human laminin B2 (LAMB2) cDNA clone and assignment of the gene to chromosome region 1q25-->q31. (PubMed id 3234037)2, 3, 4 Fukushima Y.... Shows T.B. (1988)
- Evaluation of the ARMD1 locus on 1q25-31 in patients with age-related maculopathy: genetic variation in laminin genes and in exon 104 of HEMICENTIN-1. (PubMed id 15370542)1, 3, 6 Hayashi M....Allikmets R. (2004)
- Differences in human laminin B2 sequences. (PubMed id 1806043)1, 3, 4 Santos C.L.S.... Brentani R. (1991)
- Structure of the human laminin B2 chain gene reveals extensive divergence from the laminin B1 chain gene. (PubMed id 1985895)1, 3, 4 Kallunki T.... Tryggvason K. (1991)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. (PubMed id 12754519)3, 4 Zhang H.... Aebersold R. (2003)
- Human laminin B2 chain. Comparison of the complete amino acid sequence with the B1 chain reveals variability in sequence homology between different structural domains. (PubMed id 3360804)3, 4 Pikkarainen T.... Tryggvason K. (1988)
- Gamma 1 laminin and its biologically active KDI-domain may guide axons in the floor plate of human embryonic spinal cord. (PubMed id 12526023)1, 3 Wiksten M....Liesi P. (2003)
- Sequence variant in the laminin gamma1 (LAMC1) gene associated with familial pelvic organ prolapse. (PubMed id 17021862)1, 3 Nikolova G....Rodriguez L.V. (2007)
- Laminin deposition is dispensable for vasculogenesis but regulates blood vessel diameter independent of flow. (PubMed id 18073332)1, 3 Jakobsson L....Claesson-Welsh L. (2008)
|
Search for LAMC1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing LAMC1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing LAMC1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing LAMC1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for LAMC1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for LAMC1:

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