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Aliases & Descriptions for LAMB1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| Laminin B1 chain 3 | | cutis laxa with marfanoid phenotype 1, 2 | | laminin, beta 1 2 |
|
| | Search outside databases for aliases for LAMB1 genePrevious GC identifers: GC07M106048 GC07M107110 GC07M107124 GC07M107158 |
Summaries for LAMB1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for LAMB1: Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the beta chain isoform laminin, beta 1. The beta 1 chain has 7 structurally distinct domains which it shares with other beta chain isomers. The C-terminal helical region containing domains I and II are separated by domain alpha, domains III and V contain several EGF-like repeats, and domains IV and VI have a globular conformation. Laminin, beta 1 is expressed in most tissues that produce basement membranes, and is one of the 3 chains constituting laminin 1, the first laminin isolated from Engelbreth-Holm-Swarm (EHS) tumor. A sequence in the beta 1 chain that is involved in cell attachment, chemotaxis, and binding to the laminin receptor was identified and shown to have the capacity to inhibit metastasis. [provided by RefSeq] UniProtKB/Swiss-Prot: LAMB1_HUMAN, P07942Function: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix componentsGene Wiki entry for LAMB1 (Laminin%2C_beta_1) |
Genomic Location for LAMB1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the LAMB1 gene 
Entrez Gene cytogenetic band: 7q22 Ensembl cytogenetic band: 7q31.1 HGNC cytogenetic band: 7q22LAMB1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M107351:
(about GC identifiers)
Start:
|
107,351,484 bp from pter |
End:
|
107,431,040 bp from pter |
Size:
|
79,557 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 106,925,392-107,004,933 |
RefSeq DNA sequence:- NC_000007.12 NT_007933.14 NT_079596.2
| Proteins for LAMB1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: LAMB1_HUMAN, P07942 (See
protein sequence)Recommended Name: Laminin subunit beta-1 precursor Size: 1786 amino acids; 198066 Da
Subunit: Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Beta-1 is a subunit of laminin-1 (EHS laminin), laminin-2 (merosin), and laminin-6 (K-laminin)
Subcellular location: Secreted, extracellular space, extracellular matrix, basement membrane. Note=Major component
Secondary accessions: Q14D91REFSEQ proteins: NP_002282.2
ENSEMBL proteins: ENSP00000377190 ENSP00000377191 ENSP00000377189 ENSP00000222399
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/9 Gene Ontology (GO) cellular component terms (links to tree view) (see all 9
): About this table
Antibodies for LAMB1: Assays for LAMB1: | Protein
Domains/ Families for LAMB1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P07942
ProtoNet protein and cluster: P07942 1 Blocks protein family: IPB002049 Laminin-type EGF-like domain
UniProtKB/Swiss-Prot: LAMB1_HUMAN, P07942Domain: The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structureDomain: Domains VI and IV are globularSimilarity: Contains 13 laminin EGF-like domainsSimilarity: Contains 1 laminin IV type B domainSimilarity: Contains 1 laminin N-terminal domain | Gene Function for LAMB1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002291
Applied Biosystems Silencer® siRNAs for LAMB1
Sigma-Aldrich siRNA and siRNA Panels for LAMB1  Sigma-Aldrich shRNA Panels and shRNA for LAMB1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002291                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002291                                  untagged cDNA clone in CMV expression vector: NM_002291 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002291
UniProtKB/Swiss-Prot: LAMB1_HUMAN, P07942Function: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix componentsGenatlas biochemistry entry for LAMB1:laminin,beta 1 polypeptide,component of basement membrane zone,expressed during early development in glomerular,perineural,arterial smooth muscle,paralog to LAMB2,heterotrimerizing (laminin 12) with laminin alpha 2 and beta 12 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Lamb1-1):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for LAMB1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for LAMB1 (Your Favorite Gene powered by Ingenuity) 
5/118 Interacting proteins for LAMB1 (ENSP000002223993 P079422) via UniProtKB, MINT, and/or STRING (see all 118
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for LAMB1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for LAMB1 3 Novoseek chemical compound relationships for LAMB1 gene
About this table
|
Transcripts for LAMB1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002291
Sigma-Aldrich siRNA and siRNA Panels for LAMB1  Sigma-Aldrich shRNA Panels and shRNA for LAMB1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002291 REFSEQ mRNAs for LAMB1 gene: NM_002291.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002291               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002291                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002291                                  untagged cDNA clone in CMV expression vector: NM_002291  Additional cDNA sequence: AK303501.1 AK307611.1 AK309921.1 BC026018.2 BC044633.1 BC052598.1 BC113455.1 BX648251.1 CR601216.1 CR622254.1 M20206.1 M61916.1 24/27 DOTS entries (see all 27
): DT.116492 DT.100826066 DT.100802139 DT.101977309 DT.434354 DT.121107815 DT.100826068 DT.40269438 DT.75100426 DT.100826064 DT.65288674 DT.306948 DT.75192510 DT.95271406 DT.100714239 DT.121107830 DT.121107880 DT.453345 DT.92028197 DT.91733177 DT.95236215 DT.100045042 DT.102835860 DT.121107847 24/401 AceView cDNA sequences (see all 401
):CR622254 CA437281 BC052598 CA443283 BE464396 AI423781 AI632719 BG400644 T28659 BU165413 M61916 AU130889 CB143661 BI494528 AA358756 AA303886 BC026018 AA330574 AL699295 CA391954 BX491906 AA333061 AI948662 AI537398
highest scoring ESTs for LAMB1:M61916 AL699295 AL701539 AL704496 AL710200 BX471292 BX473812 BX473829 BX473949 BX474256 Unigene Cluster for LAMB1: Laminin, beta 1 Hs.650585 [show with all ESTs]Unigene Representative Sequence: NM_002291
GeneLoc Exon Structure
5/16 Alternative Splicing Database (ASD) splice patterns (SP) for LAMB1 (see all 16
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15a | · | 15b | ^ | |
| SP1: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 16 | ^ | 17a | · | 17b | ^ | 18a | · | 18b | ^ | 19 | ^ | 20 | ^ | 21 | ^ | 22a | · | 22b | · | 22c | ^ | 23 | ^ | 24 | ^ | 25a | · | 25b | ^ | 26 | ^ | 27a | · | 27b | ^ | 28a | · | 28b | · | 28c | ^ | 29a | · | 29b | ^ | 30a | · | 30b | · | 30c | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 31 | ^ | 32 | ^ | 33a | · | 33b | ^ | 34 | ^ | 35a | · | 35b | ^ | 36 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for LAMB1
4 Ensembl transcripts including schematic representations: ENST00000393560
ENST00000393561
ENST00000393559
ENST00000222399
|
Expression for LAMB1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| LAMB1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for LAMB1
1 / 2 / 3 5 probe-sets matching LAMB1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTTGTAACAG
SOURCE GeneReport for Unigene cluster: Hs.650585
Expression variation in blood from EXPOLDB for LAMB1 |
Orthologs for LAMB1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for LAMB1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for LAMB1
ENSEMBL Gene Tree for LAMB1 | Paralogs for LAMB1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for LAMB1 gene
- LAMB22 LAMB42
|
SNPs/Variants for LAMB1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for LAMB1 (up to first 250kb)
|
Disorders & Mutations for LAMB1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 150240 10/12 Novoseek disease relationships for LAMB1 gene (see all 12
)
About this table
Human Gene Mutation Database: LAMB1 Human Genome Epidemiology Navigator: LAMB1 (1 document)
|
Medical News for LAMB1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for LAMB1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/133 PubMed articles for LAMB1 gene (see all 133
):- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Recurrent ctb(7)(q31.3) and possible laminin involvement in a neonatal cutis laxa with a Marfan phenotype. (PubMed id 1864606)2, 3 Bonneau D....Larregue M. (1991)
- Structure of the human laminin B1 chain gene. (PubMed id 1975589)3, 4 Vuolteenaho R.... Tryggvason K. (1990)
- A Hpa I polymorphism in the human laminin B1 chain gene on 7q22. (PubMed id 2563160)2, 3 Ikonen J....Tryggvason K. (1989)
- Aortic root dilatation associated with partial trisomy 7(q31.2----qter). (PubMed id 2704655)2, 3 Roche K.B....Wilson B.E. (1989)
- Human laminin B1 chain. A multidomain protein with gene (LAMB1) locus in the q22 region of chromosome 7. (PubMed id 3611077)3, 4 Pikkarainen T.... Tryggvason K. (1987)
- Isolation of a cDNA clone for the human laminin-B1 chain and its gene localization. (PubMed id 3661559)3, 4 Jaye M....Drohan W.N. (1987)
- Decreased expression of laminin beta 1 in chromosome 21-linked Bethlem myopathy. (PubMed id 10407855)1, 3 Merlini L....Maraldi N.M. (1999)
- Early onset autosomal dominant myopathy with rigidity of the spine: a possible role for laminin beta 1? (PubMed id 9196901)1, 3 Taylor J....Sewry C. (1997)
- Genes associated with the genesis of leiomyoma of the uterus in a commonly deleted chromosomal region at 7q22. (PubMed id 15706419)1, 3 Saito E....Tanaka T. (2005)
|
Search for LAMB1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing LAMB1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing LAMB1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing LAMB1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for LAMB1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for LAMB1:

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Incremental update: 13 Oct 2009
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