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LAIR2 Gene

protein-coding GIFtS: 53

GC19P059705

leukocyte-associated immunoglobulin-like receptor 2
(Previous name: leukocyte-associated Ig-like receptor 2 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
CD306 ^¹, ², ³
LAIR-2 ^³
MGC71634 ^²

Descriptions
CD306 antigen ^³
leukocyte-associated Ig-like receptor 2 ^¹, ²
leukocyte-associated Ig-like receptor-2 ^²
leukocyte-associated immunoglobulin-like receptor 2 ^²

External Ids
HGNC: 6478¹
Entrez Gene: 3904²
UniProtKB: Q6ISS4³
Ensembl: ENSG00000167618⁷

Search outside databases for aliases for LAIR2 gene

Previous GC identifers: GC19P055877 GC19P055438 GC19P059689

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for LAIR2:

The protein encoded by this gene is a member of the immunoglobulin superfamily. It was identified

by its similarity to LAIR1, an inhibitory receptor present on mononuclear leukocytes. This gene

maps to a region of 19q13.4, termed the leukocyte receptor cluster, which contains 29 genes in the

immunoglobulin superfamily, including LAIR1. The function of this protein is unknown, although it

is thought to be secreted and may help modulate mucosal tolerance. Two transcript variants

encoding different isoforms have been found for this gene. [provided by RefSeq]

Gene Wiki entry for LAIR2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the LAIR2 gene

Entrez Gene cytogenetic band: 19q13.4 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.4

LAIR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19P059705: (about GC identifiers)

Start:	59,705,825 bp from pter
End:	59,713,709 bp from pter
Size:	7,885 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000019.8 NT_011109.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: LAIR2_HUMAN, Q6ISS4 (See protein sequence)

Recommended Name: Leukocyte-associated immunoglobulin-like receptor 2 precursor

Size: 152 amino acids; 16280 Da

Subcellular location: Secreted

Secondary accessions: Q6PEZ4

Alternative splicing: 2 isoforms: Q6ISS4-1 Q6ISS4-2 (Named isoforms)

REFSEQ proteins (2 alternative transcripts):

NP_002279.2 NP_067154.1

ENSEMBL proteins:

ENSP00000301202 ENSP00000301203

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	R&D Systems Recombinant & Natural Proteins for LAIR2
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (LAIR2)
	Human Recombinant Proteins from Abnova (LAIR2)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--

About this table

Antibodies for LAIR2:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	R&D Systems Antibodies for LAIR2
	Antibodies from Abcam (LAIR2), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (LAIR2)
	Novus Biologicals Antibodies for LAIR2

Assays for LAIR2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q6ISS4

ProtoNet protein and cluster: Q6ISS4

1 Blocks protein family: IPB003599 Immunoglobulin subtype

UniProtKB/Swiss-Prot: LAIR2_HUMAN, Q6ISS4

Similarity: Contains 1 Ig-like C2-type (immunoglobulin-like) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (LAIR2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (LAIR2)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002288

Applied Biosystems Silencer® siRNAs for LAIR2

Sigma-Aldrich siRNA for LAIR2

Sigma-Aldrich shRNA for LAIR2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for LAIR2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_002288
Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_002288
untagged cDNA clones in CMV expression vector (see all 2): NM_002288

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_002288

Genatlas biochemistry entry for LAIR2:

leukocyte-associated immunoglobulin-like receptor,32kDa,expressed in monocytes

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Gene Network Central^TM Interacting Genes and Proteins Network for LAIR2

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for LAIR2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (LAIR2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (LAIR2)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002288

Sigma-Aldrich siRNA for LAIR2

Sigma-Aldrich shRNA for LAIR2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_002288 NM_021270

REFSEQ mRNAs for LAIR2 gene (2 alternative transcripts):

NM_002288.3 NM_021270.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_002288 NM_021270

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_002288
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_002288
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002288

Additional cDNA sequence:

AF013250.1 BC057790.1 BC069366.1 DQ656002.2 DQ656003.2 EF174570.1

5 DOTS entries:

DT.306715 DT.87046706 DT.121487195 DT.100026356 DT.95125636

18 AceView cDNA sequences:

AI262718 NM_021270 NM_002288 BX106365 AA133300 AI189606 BV178815 AA133246

AI189280 BV167967 BC057790 N26404 BC069366 CF527743 AI126085 AF013250

CB991201 BG198445

highest scoring ESTs for LAIR2:

AA133246 AA133300 AF013250 AI126085 AI189280 AI189606 AI262718 BC057790 BC069366 BX106365

Unigene Cluster for LAIR2:

Leukocyte-associated immunoglobulin-like receptor 2

Hs.43803 [show with all ESTs]

Unigene Representative Sequence: NM_002288

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for LAIR2

ExUns:	1	^	2	^	3	^	4a	·	4b
SP1:
SP2:					-

About this scheme

ECgene alternative splicing isoforms for LAIR2

2 Ensembl transcripts including schematic representations:

ENST00000301202 ENST00000351841

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

LAIR2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for LAIR2

¹ / ² / ³

3 probe-sets matching LAIR2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
33541_s_at²^{, 3}	U95-A	2	1.00	0.69	1.00	1.00	AA133246	1.00	1.00	1.00	1
207509_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_002288	0.60	1.00	0.82	1
207509_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AATGAGGAGA

SOURCE GeneReport for Unigene cluster: Hs.43803
Expression variation in blood from EXPOLDB for LAIR2

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for LAIR2 gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	LAIR2¹	--	leukocyte-associated immunoglobulin-like receptor 2	98.35(n) 97.52(a)	748959 XM_001164419.1 XP_001164419.1

About this table Species with no ortholog for LAIR2

ENSEMBL Gene Tree for LAIR2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for LAIR2 gene

LAIR1²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/96 NCBI SNPs in LAIR2 are shown (see all 96 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 42)

AB	SNP ID	Valid	Chr 19 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs2042288^1,2	A,C,F,H	59705799(-)	`TGAGAT/CGAGAG`	2	--	ng5¹ tfbs³		5	EU EA WA	1922
	rs4806766^1,2	A,C,F,H	59705494(+)	`TTTTTC/TAATGC`	2	--	ng5¹		12	EU EA WA NA	1020
	rs2287828^1,2	A,C,F,H	59705936(-)	`CGGTCC/TCAGAA`	2	--	ut5¹		8	EA NA EU WA	2030
--	rs4806517^1,2	A,C,F,H	59705130(+)	`TCGTCT/CGTGTT`	2	--	ng5¹		4	EU EA WA	412
	rs2042287^1,2	A,C,F	59705900(-)	`GATGTG/ACTGGC`	2	--	ut5¹ ese³		1	EA	1482
	rs4806767^1,2	A,C,F	59705571(+)	`ACTCTC/TATTTT`	2	--	ng5¹ tfbs³		4	EA NA	212
	rs2042290^1,2	C,F,H	59705583(-)	`GTCCTC/TGTATT`	2	--	ng5¹		12	EU EA WA NA	1052
	rs2042289^1,2	C,F,H	59705639(-)	`CACACG/ATTAAC`	2	--	ng5¹		9	EU WA NA EA	768
	rs36121405^1,2	C,F	59711079(+)	`GACTTG/AGTCCA`	2	S/G	mis¹		5	NA EU EA WA	478
--	rs8102425^1,2	F,H	59713707(+)	`ATTCGC/TAATGG`	2	--	ut3¹		4	EU EA WA	416

About this table

HapMap Linkage Disequilibrium images for LAIR2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 602993

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/14 PubMed articles for LAIR2 gene (see all 14 ):

LAIR-1, a novel inhibitory receptor expressed on human mononuclear leukocytes. (PubMed id 9285412)^{2, 3, 4} Meyaard L.... Phillips J.H. (1997)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Leukocyte-associated Ig-like receptor-1 functions as an inhibitory receptor on cytotoxic T cells. (PubMed id 10229813)^{3, 4} Meyaard L.... Phillips J.H. (1999)
The soluble leukocyte-associated Ig-like receptor (LAIR)-2 antagonizes the collagen/LAIR-1 inhibitory immune interaction. (PubMed id 18209062)^{1, 3} Lebbink R.J....Meyaard L. (2008)
The epithelial cellular adhesion molecule (Ep-CAM) is a ligand for the leukocyte-associated immunoglobulin-like receptor (LAIR). (PubMed id 11435477)^{1, 3} Meyaard L....Clevers H. (2001)
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. (PubMed id 17567994)³ Denoeud F....Reymond A. (2007)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Extensive gene duplications and a large inversion characterize the human leukocyte receptor cluster. (PubMed id 10941842)³ Wende H....Ziegler A. (2000)
Generation and analysis of 280,000 human expressed sequence tags. (PubMed id 8889549)³ Hillier L.D....Marra M. (1996)
[Cloning, prokaryotic expression of LAIR and identification of their immunological reactivities] (PubMed id 15151743)¹ Xie X....Jin B.Q. (2003)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 3904	HGNC: 6478	AceView: LAIR2	Ensembl:ENSG00000167618	euGenes: HUgn3904
ECgene: LAIR2	H-InvDB: LAIR2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for LAIR2
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for LAIR2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for LAIR2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for LAIR2		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for LAIR2		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (LAIR2)
	Antibodies (LAIR2)
	Chimera RNAi (LAIR2)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

Search for Antibodies & Assays

	Recombinant Proteins (LAIR2)
	Antibodies (LAIR2)

Search OriGene for LAIR2

Search Tocris compounds for LAIR2

Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for LAIR2

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LAIR2 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for LAIR2

Summaries
for LAIR2

Genomic Location
for LAIR2

Proteins
for LAIR2

Protein Domains/
Families
for LAIR2

Gene Function
for LAIR2

Pathways & Interactions
for LAIR2

Drugs & Compounds
for LAIR2

Transcripts
for LAIR2

Expression
for LAIR2

Orthologs
for LAIR2

Paralogs
for LAIR2

SNPs/Variants
for LAIR2

Disorders & Mutations
for LAIR2

Medical News
for LAIR2

Publications
for LAIR2

Search for LAIR2

Genome Databases showing LAIR2

Other Databases showing LAIR2

Specialized Databases showing LAIR2

Licensable Technologies
for LAIR2

Services
for LAIR2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

LAIR2 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor LAIR2

Summariesfor LAIR2

Genomic Locationfor LAIR2

Proteinsfor LAIR2

Protein Domains/Familiesfor LAIR2

Gene Functionfor LAIR2

Pathways & Interactionsfor LAIR2

Drugs & Compoundsfor LAIR2

Transcriptsfor LAIR2

Expression for LAIR2

Orthologsfor LAIR2

Paralogsfor LAIR2

SNPs/Variantsfor LAIR2

Disorders & Mutationsfor LAIR2

Medical Newsfor LAIR2

Publicationsfor LAIR2

Search for LAIR2

Genome Databases showing LAIR2

Other Databases showing LAIR2

Specialized Databases showing LAIR2

Licensable Technologiesfor LAIR2

Servicesfor LAIR2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for LAIR2

Summaries
for LAIR2

Genomic Location
for LAIR2

Proteins
for LAIR2

Protein Domains/
Families
for LAIR2

Gene Function
for LAIR2

Pathways & Interactions
for LAIR2

Drugs & Compounds
for LAIR2

Transcripts
for LAIR2

Expression
for LAIR2

Orthologs
for LAIR2

Paralogs
for LAIR2

SNPs/Variants
for LAIR2

Disorders & Mutations
for LAIR2

Medical News
for LAIR2

Publications
for LAIR2

Licensable Technologies
for LAIR2

Services
for LAIR2