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Aliases & Descriptions for LAIR1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD305 1 , 2 , 3 LAIR-1 2 , 3 hLAIR1 3
Descriptions CD305 antigen 3 leukocyte-associated Ig-like receptor 1 1 , 2 leukocyte-associated immunoglobulin-like receptor 1 2
Search outside databases for aliases for LAIR1 genePrevious GC identifers: GC19M055728 GC19M055289 GC19M059541
Summaries for LAIR1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LAIR1 : The protein encoded by this gene is an inhibitory receptor found on peripheral mononuclear cells,including NK cells, T cells, and B cells. Inhibitory receptors regulate the immune response toprevent lysis of cells recognized as self. The gene is a member of both the immunoglobulinsuperfamily and the leukocyte-associated inhibitory receptor family. The gene maps to a region of19q13.4 called the leukocyte receptor cluster, which contains at least 29 genes encodingleukocyte-expressed receptors of the immunoglobulin superfamily. [provided by RefSeq] UniProtKB/Swiss-Prot: LAIR1_HUMAN, Q6GTX8 Function : Functions as an inhibitory receptor that plays a constitutive negative regulatory role oncytolytic function of natural killer (NK) cells, B-cells and T-cells. Activation by Tyrphosphorylation results in recruitment and activation of the phosphatases PTPN6 and PTPN11. Italso reduces the increase of intracellular calcium evoked by B-cell receptor ligation. May alsoplay its inhibitory role independently of SH2-containing phosphatases. Modulates cytokineproduction in CD4+ T-cells, downregulating IL2 and IFNG production while inducing secretion oftransforming growth factor beta. Down-regulates also IgG and IgE production in B-cells as well asIL8, IL10 and TNF secretion. Inhibits proliferation and induces apoptosis in myeloid leukemia celllines as well as prevents nuclear translocation of NF-kappa-B p65 subunit/RELA and phosphorylationof I-kappa-B alpha/CHUK in these cells. Inhibits the differentiation of peripheral bloodprecursors towards dendritic cells
Gene Wiki entry for LAIR1
Genomic Location for LAIR1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LAIR1 gene Entrez Gene cytogenetic band: 19q13.4 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.4 LAIR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M059557:
(about GC identifiers )
Start:
59,557,047 bp from pter
End:
59,573,977 bp from pter
Size:
16,931 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for LAIR1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LAIR1_HUMAN, Q6GTX8 (See
protein sequence )Recommended Name: Leukocyte-associated immunoglobulin-like receptor 1 precursor Size : 287 amino acids; 31412 Da
Subunit : Interacts with SH2 domains of tyrosine-protein phosphatases PTPN6 and PTPN11. Theinteraction with PTPN6 is constitutive. Interacts with the SH2 domain of CSK
Subcellular location : Cell membrane; Single-pass type I membrane protein
Developmental stage : Complete loss of expression when naive B-cells proliferates and differentiatesinto Ig-producing plasma cells under in vitro stimulation Alternative splicing : 4 isoforms : Q6GTX8-1 Q6GTX8-2 Q6GTX8-3 Q6GTX8-4
Post-translational modifications:
Phosphorylation at Tyr-251 and Tyr-281 activates it. May be phosphorylated by LCK1
N-glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002278.1 NP_068352.1 ENSEMBL proteins: ENSP00000375623 ENSP00000375622 ENSP00000301193 ENSP00000319204 ENSP00000375621 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for LAIR1: Assays for LAIR1:
Protein
Domains/ Families for LAIR1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q6GTX8 ProtoNet protein and cluster: Q6GTX8
UniProtKB/Swiss-Prot: LAIR1_HUMAN, Q6GTX8 Domain : ITIM (immunoreceptor tyrosine-based inhibitor motif) motif is a cytoplasmic motif presentin 2 copies in the intracellular part of LAIR1. When phosphorylated, ITIM motif can bind the SH2domain of several SH2-containing phosphatases, leading to down-regulation of cell activation Similarity : Contains 1 Ig-like C2-type (immunoglobulin-like) domain
Gene Function for LAIR1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002287 Applied Biosystems Silencer ® siRNAs for LAIR1 Sigma-Aldrich siRNA and siRNA Panels for LAIR1 Sigma-Aldrich shRNA for LAIR1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002287                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002287                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002287  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002287 UniProtKB/Swiss-Prot: LAIR1_HUMAN, Q6GTX8 Function : Functions as an inhibitory receptor that plays a constitutive negative regulatory role oncytolytic function of natural killer (NK) cells, B-cells and T-cells. Activation by Tyrphosphorylation results in recruitment and activation of the phosphatases PTPN6 and PTPN11. Italso reduces the increase of intracellular calcium evoked by B-cell receptor ligation. May alsoplay its inhibitory role independently of SH2-containing phosphatases. Modulates cytokineproduction in CD4+ T-cells, downregulating IL2 and IFNG production while inducing secretion oftransforming growth factor beta. Down-regulates also IgG and IgE production in B-cells as well asIL8, IL10 and TNF secretion. Inhibits proliferation and induces apoptosis in myeloid leukemia celllines as well as prevents nuclear translocation of NF-kappa-B p65 subunit/RELA and phosphorylationof I-kappa-B alpha/CHUK in these cells. Inhibits the differentiation of peripheral bloodprecursors towards dendritic cells Induction : By T-cell receptor stimulation in a process that requires p38 MAP kinase and ERKsignaling
Genatlas biochemistry entry for LAIR1 :leukocyte-associated immunoglobulin-like receptor 1,32kDa,expressed in monocytes 2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for LAIR1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for LAIR1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for LAIR1 5 Interacting proteins for LAIR1 (ENSP00000319204 3 ) via UniProtKB, MINT, and/or STRING About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006955 immune response
IEA --
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Drugs & Compounds for LAIR1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LAIR1 1 Novoseek chemical compound relationship for LAIR1 gene
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Transcripts for LAIR1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002287 Sigma-Aldrich siRNA and siRNA Panels for LAIR1 Sigma-Aldrich shRNA for LAIR1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002287 NM_021706
REFSEQ mRNAs for LAIR1 gene (2 alternative transcripts): NM_002287.3 NM_021706.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002287 NM_021706
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002287                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002287                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002287  
Additional cDNA sequence: AF013249.1 AF109683.1 AF251509.2 AK097869.1 AK290415.1 AK303261.1 AK309895.1 AK315419.1 BC027899.1 BC118642.1 CR542051.1 CR592817.1 CR602665.1 CR610686.1 DQ655942.2
24/26 DOTS entries (see all 26
): DT.209648 DT.95125636 DT.100026356 DT.101969436 DT.100784848 DT.91873796 DT.121487316 DT.121487338 DT.86858159 DT.100026357 DT.121487396 DT.121487416 DT.75134247 DT.121487252 DT.99953756 DT.100730601 DT.100784850 DT.121487544 DT.75135538 DT.91737059 DT.91849101 DT.91918051 DT.95174123 DT.97767483
24/127 AceView cDNA sequences (see all 127
):CD369975 BQ712304 NM_021708 CR592817 AU076738 BC027899 CR602665 AI075828 BI906511 CR542051 BQ709450 AW468149 CD365990 BQ574472 CD367788 BG619812 CR610686 AW104126 BI756388 AI632166 NM_002287 NM_021706 AK097869 CA431460
highest scoring ESTs for LAIR1 :AF013249 AF109683 AF251509 AK097869 AL552821 AU122160 BC027899 BI819960 BI836604 BI906511
Unigene Cluster for LAIR1: Leukocyte-associated immunoglobulin-like receptor 1 Hs.572535 [show with all ESTs ] Unigene Representative Sequence: NM_002287 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for LAIR1 (see all 16
) ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d · 11e · 11f SP1 :   -       -       -   -   -           -                 SP2 :   -             -   -   -           -                 SP3 :   -         -     -   -   -           -                 SP4 :   -             -   -   -           -                 SP5 :   -         -     -   -   -           -                
About this scheme ECgene alternative splicing isoforms for LAIR1 5 Ensembl transcripts including schematic representations : ENST00000391743
ENST00000391742
ENST00000348231
ENST00000313038
ENST00000391741
Expression for LAIR1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LAIR1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LAIR1 1 / 2 / 3
5 probe-sets matching LAIR1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.572535 Expression variation in blood from EXPOLDB for LAIR1
UniProtKB/Swiss-Prot: LAIR1_HUMAN, Q6GTX8 Tissue specificity : Expressed on the majority of peripheral mononuclear cells, including naturalkiller (NK) cells, T-cells, B-cells, monocytes, and dendritic cells. Highly expressed in naiveT-cells and B-cells but no expression on germinal center B-cells. Abnormally low expression innaive B-cells from HIV-1 infected patients. Very low expression in NK cells from a patient withchronic active Epstein-Barr virus infection
Orthologs for LAIR1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LAIR1 gene from 5 species
About this table Species with no ortholog for LAIR1 ENSEMBL Gene Tree for LAIR1 Paralogs for LAIR1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LAIR1 gene LAIR2 2
SNPs/Variants for LAIR1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LAIR1 (up to first 250kb)
Disorders & Mutations for LAIR1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602992 5 Novoseek disease relationships for LAIR1 gene
About this table 1 PharmGKB disease relationship for LAIR1 gene About this table
Medical News for LAIR1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LAIR1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/70 PubMed articles for LAIR1 gene (see all 70
): LAIR-1, a novel inhibitory receptor expressed on human mononuclear leukocytes. (PubMed id 9285412) 1, 2, 3, 4 Meyaard L.... Phillips J.H. (1997) The inhibitory leukocyte-associated Ig-like receptor-1 (LAIR-1) is expressed at high levels by human naive T cells and inhibits TCR mediated activation. (PubMed id 15950745) 1, 3, 4 Maasho K.... Borrego F. (2005) Engagement of the leukocyte-associated Ig-like receptor-1 induces programmed cell death and prevents NF-kappaB nuclear translocation in human myeloid leukemias. (PubMed id 11069054) 1, 3, 4 Poggi A.... Zocchi M.R. (2000) Leukocyte-associated immunoglobulin-like receptor-1 (LAIR-1) is differentially expressed during human B cell differentiation and inhibits B cell receptor-mediated signaling. (PubMed id 10540327) 1, 3, 4 van der Vuurst de Vries A.-R.... Meyaard L. (1999) Identification and characterization of leukocyte-associated Ig-like receptor-1 as a major anchor protein of tyrosine phosphatase SHP-1 in hematopoietic cells. (PubMed id 10764762) 1, 3, 4 Xu M.-J.... Zhao Z.J. (2000) Leukocyte-associated Ig-like receptor-1 functions as an inhibitory receptor on cytotoxic T cells. (PubMed id 10229813) 1, 3, 4 Meyaard L.... Phillips J.H. (1999) Differential contribution of the immunoreceptor tyrosine-based inhibitory motifs of human leukocyte-associated Ig-like receptor-1 to inhibitory function and phosphatase recruitment. (PubMed id 14565933) 1, 3, 4 Verbrugge A.... Meyaard L. (2003) Constitutive association of SHP-1 with leukocyte-associated Ig-like receptor-1 in human T cells. (PubMed id 11160222) 1, 3, 4 Sathish J.G.... Matthews R.J. (2001) Inhibitory receptors CD85j, LAIR-1, and CD152 down-regulate immunoglobulin and cytokine production by human B lymphocytes. (PubMed id 15939744) 1, 3, 4 Merlo A....Saverino D. (2005) Chronic active Epstein-Barr virus infection associated with low expression of leukocyte-associated immunoglobulin-like receptor-1 (LAIR-1) on natural killer cells. (PubMed id 12757266) 1, 3, 4 Aoukaty A.... Tan R. (2003)
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Genome Databases showing LAIR1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LAIR1
(According to HUGE )
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Specialized Databases showing LAIR1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LAIR1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LAIR1:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009