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LACRT Gene

protein-coding GIFtS: 43

GC12M053310

lacritin
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
LACRITIN ^¹
MGC71934 ^²
lacritin ^²

External Ids
HGNC: 16430¹
Entrez Gene: 90070²
UniProtKB: Q9GZZ8³
Ensembl: ENSG00000135413⁷

Search outside databases for aliases for LACRT gene

Previous GC identifers: GC12P049944 GC12M055138 GC12M054741

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for LACRT:

The protein encoded by this gene is highly expressed in the lacrimal glands and localized primarily

to secretory granules and secretory fluid. It augments lacrimal acinar cell secretion, promotes

ductal cell proliferation, and stimulates signaling through tyrosine phosphorylation and release

of calcium. [provided by RefSeq]

UniProtKB/Swiss-Prot: LACRT_HUMAN, Q9GZZ8

Function: Modulates secretion by lacrimal acinar cells

Gene Wiki entry for LACRT (Lacritin)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the LACRT gene

Entrez Gene cytogenetic band: 12q13 Ensembl cytogenetic band: 12q13.2 HGNC cytogenetic band: 12q13

LACRT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M053310: (about GC identifiers)

Start:	53,310,864 bp from pter
End:	53,314,946 bp from pter
Size:	4,083 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000012.10 NT_029419.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: LACRT_HUMAN, Q9GZZ8 (See protein sequence)

Recommended Name: Extracellular glycoprotein lacritin precursor

Size: 138 amino acids; 14246 Da

Subcellular location: Secreted

REFSEQ proteins: NP_150593.1

ENSEMBL proteins:

ENSP00000257867

Human Recombinant Proteins

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	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IDA	17850790
GO:0030141	secretory granule	IDA	11419941

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Antibodies for LACRT:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for LACRT

Assays for LACRT:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q9GZZ8

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (LACRT)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_033277

Applied Biosystems Silencer® siRNAs for LACRT

Sigma-Aldrich siRNA for LACRT

Sigma-Aldrich shRNA for LACRT

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for LACRT
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_033277
Myc/DDK tagged cDNA clone in CMV expression vector: NM_033277
untagged cDNA clone in CMV expression vector: NM_033277

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_033277

UniProtKB/Swiss-Prot: LACRT_HUMAN, Q9GZZ8

Function: Modulates secretion by lacrimal acinar cells

5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001948	glycoprotein binding	IDA	11419941
GO:0001968	fibronectin binding	IDA	11419941
GO:0005518	collagen binding	IDA	11419941
GO:0008083	growth factor activity	IDA	16982797
GO:0043237	laminin-1 binding	IDA	11419941

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Gene Network Central^TM Interacting Genes and Proteins Network for LACRT

5/6 Interacting proteins for LACRT (ENSP00000257867³) via UniProtKB, MINT, and/or STRING (see all 6 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CSPG5	ENSP00000373244³	STRING (score=.87)
FBLN2	ENSP00000295761³	STRING (score=.848)
NID1	ENSP00000264187³	STRING (score=.812)
FN1	ENSP00000323534³	STRING (score=.784)
SDC1	ENSP00000370542³	STRING (score=.77)

About this table

5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8 ):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0033173	calcineurin-NFAT signaling pathway	IDA	16923831
GO:0034067	protein localization in Golgi apparatus	IDA	16923831
GO:0050679	positive regulation of epithelial cell proliferation	IDA	16923831
GO:0050731	positive regulation of peptidyl-tyrosine phosphorylation	IDA	11419941
GO:0051047	positive regulation of secretion	IDA	11419941

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for LACRT
1 Novoseek chemical compound relationship for LACRT gene

Compound	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine	9.74	2	11419941 (1), 16488965 (1)

About this table

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (LACRT)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_033277

Sigma-Aldrich siRNA for LACRT

Sigma-Aldrich shRNA for LACRT

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_033277

REFSEQ mRNAs for LACRT gene:

NM_033277.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_033277

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_033277
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_033277
                                 untagged cDNA clone in CMV expression vector: NM_033277

Additional cDNA sequence:

AF238867.1 BC062217.1 BC069317.1

2 DOTS entries:

DT.100020180 DT.121171957

24/89 AceView cDNA sequences (see all 89 ):

CD723803 CD721903 CD722415 CD722974 CD721852 CK429721 CD724016 CK429570

CD723622 CK431089 CD721917 CK430940 CK429605 CD722243 CK430809 CD722839

CK429796 CD724040 CD723643 CD723966 CD724191 CD723944 CK429581 CK430159

highest scoring ESTs for LACRT:

AF238867 BC062217 BC069317 BQ111233 CA946301 CA946369 CA946492 CB987815 CA946444 CA946497

Unigene Cluster for LACRT:

Lacritin

Hs.307096 [show with all ESTs]

Unigene Representative Sequence: CK429396

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for LACRT

ExUns:	1a	·	1b	·	1c	^	2	^	3a	·	3b	^	4a	·	4b	·	4c	^	5
SP1:											-						-
SP2:											-		-				-
SP3:
SP4:											-		-

About this scheme

ECgene alternative splicing isoforms for LACRT

1 Ensembl transcript including schematic representation:

ENST00000257867

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

LACRT expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for LACRT

¹ / ² / ³

2 probe-sets matching LACRT gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
224540_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AF238867	0.80	1.00	0.91	1
224540_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AGAAGCTGAA

SOURCE GeneReport for Unigene cluster: Hs.307096
UniProtKB/Swiss-Prot: LACRT_HUMAN, Q9GZZ8
Tissue specificity: Expressed in secretory granules of many acinar cells in lacrimal gland and in
scattered acinar cells of salivary glands

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for LACRT gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	LACRT¹	--	lacritin	99.27(n) 99.27(a)	748041 XM_001170736.1 XP_001170736.1

About this table Species with no ortholog for LACRT

ENSEMBL Gene Tree for LACRT

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/23 NCBI SNPs in LACRT are shown (see all 23 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 30)

AB	SNP ID	Valid	Chr 12 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs11832807^1,2	A,C,F,H	53315075(+)	`AAGGGC/ATAGGT`	1	--	ng3¹		4		EU EA WA	414
	rs11833647^1,2	C,F,H	53316899(+)	`CTTGAC/TGGACC`	1	--	ng3¹		4		EU EA WA	418
	rs3809160^1,2	F,H	53315610(-)	`GGGTCC/TCATTG`	1	--	ng3¹		4		EU EA WA	400
	rs12809758^1,2	H	53316666(+)	`GCCCTT/CTCCTC`	1	--	ng3¹ trp³		4		EU EA WA	412
--	rs4505153^1,2	H	53316055(-)	`GACTCC/TTGCTC`	1	--	ng3¹		4		EU EA WA	420
	rs4505154^1,2	H	53315998(-)	`AAAACC/TTACTT`	1	--	ng3¹		4		EU EA WA	420
--	rs7138121^1,2	C,F,H	53314313(+)	`CAAGAG/TAATCG`	1	--	int¹		3		EU EA	298
	rs17114865^1,2	C,F,H	53313479(+)	`CTCCTG/ATGGCT`	1	--	int¹		11		NA EU EA WA	978
	rs2706226^1,2	H	53312810(+)	`TGATGT/GGGGTG`	1	--	int¹		4		EU EA WA	414
--	rs35532788^1,2	--	53316286(+)	`AAAGG-/GAAGAT`	1	--	ng3¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for LACRT (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 607360

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/16 PubMed articles for LACRT gene (see all 16 ):

cDNA and genomic cloning of lacritin, a novel secretion enhancing factor from the human lacrimal gland. (PubMed id 11419941)^{1, 2, 3, 4} Sanghi S.... Laurie G.W. (2001)
Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002)^{3, 4} Ramachandran P....Loo J.A. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Establishment of an appropriate animal model for lacritin studies: cloning and characterization of lacritin in monkey eyes. (PubMed id 17850790)^{1, 3} Nakajima T....Azuma M. (2007)
Restricted epithelial proliferation by lacritin via PKCalpha-dependent NFAT and mTOR pathways. (PubMed id 16923831)^{1, 3} Wang J....Laurie G.W. (2006)
Expression of a novel lacrimal gland gene lacritin in human breast tissues. (PubMed id 14574570)^{1, 3} Weigelt B....van 't Veer L.J. (2003)
Lacritin and other new proteins of the lacrimal functional unit. (PubMed id 18840430)^{1, 3} McKown R.L....Laurie G.W. (2008)
Heparanase deglycanation of syndecan-1 is required for binding of the epithelial-restricted prosecretory mitogen lacritin. (PubMed id 16982797)^{1, 3} Ma P....Laurie G.W. (2006)
Proteomic analysis of human meibomian gland secretions. (PubMed id 16488965)^{1, 3} Tsai P.S....Sullivan D.A. (2006)
Characterisation of human tear proteins using high-resolution mass spectrometry. (PubMed id 16865190)^{1, 3} Zhou L....Tan D.T. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 90070	HGNC: 16430	AceView: LACRT	Ensembl:ENSG00000135413	euGenes: HUgn90070
ECgene: LACRT	H-InvDB: LACRT

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for LACRT
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for LACRT:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for LACRT-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for LACRT		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for LACRT		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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Search Novus for antibodies for LACRT

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LACRT Gene

protein-coding GIFtS: 43

Aliases &
Descriptions
for LACRT

Summaries
for LACRT

Genomic Location
for LACRT

Proteins
for LACRT

Protein Domains/
Families
for LACRT

Gene Function
for LACRT

Pathways & Interactions
for LACRT

Drugs & Compounds
for LACRT

Transcripts
for LACRT

Expression
for LACRT

Orthologs
for LACRT

Paralogs
for LACRT

SNPs/Variants
for LACRT

Disorders & Mutations
for LACRT

Medical News
for LACRT

Publications
for LACRT

Search for LACRT

Genome Databases showing LACRT

Other Databases showing LACRT

Specialized Databases showing LACRT

Licensable Technologies
for LACRT

Services
for LACRT

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

LACRT Gene

protein-coding GIFtS: 43

Aliases & Descriptionsfor LACRT

Summariesfor LACRT

Genomic Locationfor LACRT

Proteinsfor LACRT

Protein Domains/Familiesfor LACRT

Gene Functionfor LACRT

Pathways & Interactionsfor LACRT

Drugs & Compoundsfor LACRT

Transcriptsfor LACRT

Expression for LACRT

Orthologsfor LACRT

Paralogsfor LACRT

SNPs/Variantsfor LACRT

Disorders & Mutationsfor LACRT

Medical Newsfor LACRT

Publicationsfor LACRT

Search for LACRT

Genome Databases showing LACRT

Other Databases showing LACRT

Specialized Databases showing LACRT

Licensable Technologiesfor LACRT

Servicesfor LACRT

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for LACRT

Summaries
for LACRT

Genomic Location
for LACRT

Proteins
for LACRT

Protein Domains/
Families
for LACRT

Gene Function
for LACRT

Pathways & Interactions
for LACRT

Drugs & Compounds
for LACRT

Transcripts
for LACRT

Expression
for LACRT

Orthologs
for LACRT

Paralogs
for LACRT

SNPs/Variants
for LACRT

Disorders & Mutations
for LACRT

Medical News
for LACRT

Publications
for LACRT

Licensable Technologies
for LACRT

Services
for LACRT