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Aliases for L1TD1 Gene

Aliases for L1TD1 Gene

  • LINE1 Type Transposase Domain Containing 1 2 3 5
  • ES Cell-Associated Protein 11 3 4
  • ECAT11 3 4
  • LINE-1 Type Transposase Domain-Containing Protein 1 3
  • LINE-1 Type Transposase Domain Containing 1 3

External Ids for L1TD1 Gene

Previous GeneCards Identifiers for L1TD1 Gene

  • GC01P062434
  • GC01P062660
  • GC01P060773

Summaries for L1TD1 Gene

GeneCards Summary for L1TD1 Gene

L1TD1 (LINE1 Type Transposase Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and signal transducer activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for L1TD1 Gene

Genomics for L1TD1 Gene

Regulatory Elements for L1TD1 Gene

Enhancers for L1TD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F062194 0.9 Ensembl ENCODE 37.4 +2.2 2226 5.8 ELF3 ARID4B ZSCAN9 ETS1 RARA MIXL1 THAP11 PAF1 HMG20B SP5 L1TD1 PATJ GC01P062196 GC01P062201
GH01F062179 0.5 ENCODE 23.8 -12.7 -12748 4.3 ZNF217 CTBP1 POLR2A TEAD4 ZHX2 POU5F1 CUX1 DPF2 L1TD1 KANK4 PATJ PIGPP2 GC01P062128
GH01F062176 0.2 ENCODE 22.7 -17.5 -17541 1.7 CBX3 CBX5 SCRT2 TRIM24 TRIM28 L1TD1 PATJ PIGPP2 GC01P062128
GH01F062213 0.4 ENCODE 10.9 +18.5 18548 0.3 POLR2A L1TD1 ENSG00000200174 GC01P062219
GH01F062232 1 FANTOM5 Ensembl ENCODE 8.2 +38.3 38257 0.4 POLR2A ZFP64 USP1 KANK4 L1TD1 GC01M062237 GC01P062219
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around L1TD1 on UCSC Golden Path with GeneCards custom track

Promoters for L1TD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001520961 698 1801 PAF1 ZNF146 TEAD4 REST ETS1 POLR2A POU5F1 FOXP2 EZH2

Genomic Location for L1TD1 Gene

Chromosome:
1
Start:
62,194,802 bp from pter
End:
62,212,328 bp from pter
Size:
17,527 bases
Orientation:
Plus strand

Genomic View for L1TD1 Gene

Genes around L1TD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
L1TD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for L1TD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for L1TD1 Gene

Proteins for L1TD1 Gene

  • Protein details for L1TD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T7N2-LITD1_HUMAN
    Recommended name:
    LINE-1 type transposase domain-containing protein 1
    Protein Accession:
    Q5T7N2
    Secondary Accessions:
    • Q8NDA1
    • Q9NUV8
    • Q9NV78

    Protein attributes for L1TD1 Gene

    Size:
    865 amino acids
    Molecular mass:
    98850 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91878.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAA91878.1; Type=Erroneous termination; Positions=555; Note=Translated as Leu.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for L1TD1 Gene

neXtProt entry for L1TD1 Gene

Post-translational modifications for L1TD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for L1TD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for L1TD1 Gene

Domains & Families for L1TD1 Gene

Protein Domains for L1TD1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for L1TD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T7N2

UniProtKB/Swiss-Prot:

LITD1_HUMAN :
  • Belongs to the transposase 22 family.
Family:
  • Belongs to the transposase 22 family.
genes like me logo Genes that share domains with L1TD1: view

No data available for Gene Families for L1TD1 Gene

Function for L1TD1 Gene

Gene Ontology (GO) - Molecular Function for L1TD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003727 single-stranded RNA binding IBA --
genes like me logo Genes that share ontologies with L1TD1: view
genes like me logo Genes that share phenotypes with L1TD1: view

Animal Model Products

miRNA for L1TD1 Gene

miRTarBase miRNAs that target L1TD1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for L1TD1 Gene

Localization for L1TD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for L1TD1 Gene COMPARTMENTS Subcellular localization image for L1TD1 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for L1TD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030529 intracellular ribonucleoprotein complex IBA --
genes like me logo Genes that share ontologies with L1TD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for L1TD1 Gene

Pathways & Interactions for L1TD1 Gene

SuperPathways for L1TD1 Gene

No Data Available

Interacting Proteins for L1TD1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000419901%0d%0a9606.ENSP00000259915%0d%0a
Selected Interacting proteins: Q5T7N2-LITD1_HUMAN ENSP00000419901 for L1TD1 Gene via MINT STRING IID

Gene Ontology (GO) - Biological Process for L1TD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032197 transposition, RNA-mediated IBA --
genes like me logo Genes that share ontologies with L1TD1: view

No data available for Pathways by source and SIGNOR curated interactions for L1TD1 Gene

Transcripts for L1TD1 Gene

mRNA/cDNA for L1TD1 Gene

Unigene Clusters for L1TD1 Gene

LINE-1 type transposase domain containing 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for L1TD1 Gene

No ASD Table

Relevant External Links for L1TD1 Gene

GeneLoc Exon Structure for
L1TD1
ECgene alternative splicing isoforms for
L1TD1

Expression for L1TD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for L1TD1 Gene

mRNA differential expression in normal tissues according to GTEx for L1TD1 Gene

This gene is overexpressed in Testis (x12.1), Colon - Transverse (x10.7), and Nerve - Tibial (x4.3).

Protein differential expression in normal tissues from HIPED for L1TD1 Gene

This gene is overexpressed in Cervix (27.4), Prostate (12.3), Testis (10.5), and Plasma (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for L1TD1 Gene



Protein tissue co-expression partners for L1TD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of L1TD1 Gene:

L1TD1

SOURCE GeneReport for Unigene cluster for L1TD1 Gene:

Hs.685462
genes like me logo Genes that share expression patterns with L1TD1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for L1TD1 Gene

Orthologs for L1TD1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for L1TD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia L1TD1 34 35
  • 99.03 (n)
mouse
(Mus musculus)
Mammalia L1td1 35
  • 48 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 30 (a)
OneToMany
-- 35
  • 30 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 28 (a)
OneToMany
-- 35
  • 27 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 26 (a)
OneToMany
-- 35
  • 25 (a)
OneToMany
-- 35
  • 25 (a)
OneToMany
-- 35
  • 25 (a)
OneToMany
-- 35
  • 24 (a)
OneToMany
-- 35
  • 24 (a)
OneToMany
-- 35
  • 22 (a)
OneToMany
-- 35
  • 21 (a)
OneToMany
-- 35
  • 17 (a)
OneToMany
-- 35
  • 15 (a)
OneToMany
Species where no ortholog for L1TD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for L1TD1 Gene

ENSEMBL:
Gene Tree for L1TD1 (if available)
TreeFam:
Gene Tree for L1TD1 (if available)

Paralogs for L1TD1 Gene

(1) SIMAP similar genes for L1TD1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for L1TD1 Gene

genes like me logo Genes that share paralogs with L1TD1: view

No data available for Paralogs for L1TD1 Gene

Variants for L1TD1 Gene

Sequence variations from dbSNP and Humsavar for L1TD1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10528649 -- 62,197,418(+) ATATA(-/TATATATATATATATA)GTTTA intron-variant
rs1056516 -- 62,211,337(+) TGCCC(A/C)CCTTG reference, missense
rs1056517 -- 62,211,376(+) AGCAC(G/T)CCAGG utr-variant-3-prime
rs10749730 -- 62,201,519(+) AGCAT(A/T)TTCAA intron-variant
rs10889296 -- 62,198,196(+) TTGGT(A/G)TGGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for L1TD1 Gene

Variant ID Type Subtype PubMed ID
esv3577899 CNV loss 25503493
esv3893601 CNV loss 25118596
esv3893612 CNV loss 25118596

Variation tolerance for L1TD1 Gene

Gene Damage Index Score: 6.21; 76.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for L1TD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
L1TD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for L1TD1 Gene

Disorders for L1TD1 Gene

Relevant External Links for L1TD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
L1TD1

No disorders were found for L1TD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for L1TD1 Gene

Publications for L1TD1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency. (PMID: 25702638) Emani M.R. … Lahesmaa R. (Stem Cell Reports 2015) 3 64
  4. Embryonic Stem Cell-Related Protein L1TD1 Is Required for Cell Viability, Neurosphere Formation, and Chemoresistance in Medulloblastoma. (PMID: 26159230) Santos M.C. … Okamoto O.K. (Stem Cells Dev. 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for L1TD1 Gene

Sources for L1TD1 Gene

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