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Aliases for KTN1-AS1 Gene

Subcategory (RNA class) for KTN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KTN1-AS1 Gene

  • KTN1 Antisense RNA 1 2 3 4 5
  • KTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C14orf33 3 4
  • Chromosome 14 Open Reading Frame 33 2
  • KTN1 Antisense Gene Protein 1 4
  • MYCLo-3 3

External Ids for KTN1-AS1 Gene

Previous HGNC Symbols for KTN1-AS1 Gene

  • C14orf33

Previous GeneCards Identifiers for KTN1-AS1 Gene

  • GC14M055965

Summaries for KTN1-AS1 Gene

GeneCards Summary for KTN1-AS1 Gene

KTN1-AS1 (KTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KTN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KTN1-AS1 Gene

Genomics for KTN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for KTN1-AS1 Gene

Promoters and enhancers for KTN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I055578 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 578.3 -1.5 -1462 6.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF143 KLF13 KTN1-AS1 KTN1 ATG14 TBPL2 GC14P055652
GH14I055598 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 24.9 -20.3 -20319 3.7 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS DEK SP5 KTN1 KTN1-AS1 ENSG00000259318 ATG14 WDHD1 TBPL2 SOCS4 GC14P055652
GH14I055605 Enhancer 0.9 ENCODE dbSUPER 25 -25.9 -25851 1.2 SOX13 PKNOX1 FOXA2 SIN3A ZNF384 TEAD3 CTBP1 GATA3 FOSL2 NR2F6 KTN1-AS1 KTN1 GC14P055652
GH14I055608 Enhancer 0.8 Ensembl ENCODE dbSUPER 26.2 -29.4 -29437 1.7 SRF JUND JUN KTN1-AS1 KTN1 TBPL2 GC14P055652
GH14I055556 Enhancer 0.9 Ensembl ENCODE 20.4 +22.9 22919 1.3 PKNOX1 NFIB MAX SIN3A ZNF507 CTBP1 GATA3 POLR2A RCOR1 FOS KTN1 KTN1-AS1 TBPL2 GC14M055549 GC14M054989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KTN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KTN1-AS1 Gene

Genomic Locations for KTN1-AS1 Gene
chr14:55,499,278-55,580,110
(GRCh38/hg38)
Size:
80,833 bases
Orientation:
Minus strand
chr14:55,965,996-56,046,828
(GRCh37/hg19)

Genomic View for KTN1-AS1 Gene

Genes around KTN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KTN1-AS1 Gene

Proteins for KTN1-AS1 Gene

  • Protein details for KTN1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86SY8-KTAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein KTN1-AS1
    Protein Accession:
    Q86SY8

    Protein attributes for KTN1-AS1 Gene

    Size:
    53 amino acids
    Molecular mass:
    5770 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD62624.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KTN1-AS1 Gene

Post-translational modifications for KTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KTN1-AS1 Gene

Domains & Families for KTN1-AS1 Gene

Protein Domains for KTN1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KTN1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KTN1-AS1 Gene

Function for KTN1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KTN1-AS1 Gene

Localization for KTN1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KTN1-AS1 gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KTN1-AS1 Gene

Pathways & Interactions for KTN1-AS1 Gene

SuperPathways for KTN1-AS1 Gene

No Data Available

Interacting Proteins for KTN1-AS1 Gene

Gene Ontology (GO) - Biological Process for KTN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KTN1-AS1 Gene

Drugs & Compounds for KTN1-AS1 Gene

No Compound Related Data Available

Transcripts for KTN1-AS1 Gene

mRNA/cDNA for KTN1-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KTN1-AS1 Gene

KTN1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KTN1-AS1 Gene

No ASD Table

Relevant External Links for KTN1-AS1 Gene

GeneLoc Exon Structure for
KTN1-AS1
ECgene alternative splicing isoforms for
KTN1-AS1

Expression for KTN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for KTN1-AS1 Gene:

Hs.633724
genes like me logo Genes that share expression patterns with KTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KTN1-AS1 Gene

Orthologs for KTN1-AS1 Gene

Evolution for KTN1-AS1 Gene

ENSEMBL:
Gene Tree for KTN1-AS1 (if available)
TreeFam:
Gene Tree for KTN1-AS1 (if available)

No data available for Orthologs for KTN1-AS1 Gene

Paralogs for KTN1-AS1 Gene

No data available for Paralogs for KTN1-AS1 Gene

Variants for KTN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KTN1-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000064841 -- 55,578,677(-) G/A non_coding_transcript_variant
rs1000284606 -- 55,578,324(-) A/G intron_variant
rs1000635322 -- 55,577,256(-) T/G non_coding_transcript_variant
rs1000994726 -- 55,579,589(-) G/A intron_variant
rs1001130247 -- 55,579,428(-) G/C intron_variant

Additional Variant Information for KTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KTN1-AS1 Gene

Disorders for KTN1-AS1 Gene

Additional Disease Information for KTN1-AS1

No disorders were found for KTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KTN1-AS1 Gene

Publications for KTN1-AS1 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T … Croce CM (Journal of the National Cancer Institute 2015) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for KTN1-AS1 Gene

Sources for KTN1-AS1 Gene

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