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Aliases for KTN1-AS1 Gene

Subcategory (RNA class) for KTN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KTN1-AS1 Gene

  • KTN1 Antisense RNA 1 2 3 4 5
  • KTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C14orf33 3 4
  • Chromosome 14 Open Reading Frame 33 2
  • KTN1 Antisense Gene Protein 1 4
  • MYCLo-3 3

External Ids for KTN1-AS1 Gene

Previous HGNC Symbols for KTN1-AS1 Gene

  • C14orf33

Previous GeneCards Identifiers for KTN1-AS1 Gene

  • GC14M055965

Summaries for KTN1-AS1 Gene

GeneCards Summary for KTN1-AS1 Gene

KTN1-AS1 (KTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KTN1-AS1 Gene

Genomics for KTN1-AS1 Gene

Regulatory Elements for KTN1-AS1 Gene

Enhancers for KTN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F055608 0.5 Ensembl ENCODE 26.2 -29.4 -29437 1.7 JUND JUN ZBTB40 KTN1-AS1 KTN1 TBPL2 GC14P055652
GH14F055605 1 Ensembl ENCODE 25 -25.9 -25852 1.2 SOX13 PKNOX1 TEAD4 ZNF384 TEAD3 GATA3 CTBP1 NR2F6 HOMEZ TCF7L2 KTN1-AS1 KTN1 GC14P055652
GH14F055598 0.8 Ensembl ENCODE 24.8 -20.3 -20320 3.7 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 ZNF121 FOS YY2 SP5 KTN1-AS1 KTN1 TBPL2 GC14P055652
GH14F055556 1.1 Ensembl ENCODE 20.4 +22.9 22920 1.3 ZNF687 PKNOX1 NFIA BHLHE40 MAX USF2 SIN3A MNT NR3C1 DPF2 KTN1-AS1 TBPL2 KTN1 GC14M055549
GH14F055542 1.1 ENCODE 19.6 +36.9 36882 1.6 KTN1-AS1 TBPL2 RPL7AP4 GC14P055500
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KTN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KTN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000240513 -291 3600 HDGF ARID4B SIN3A GLI4 DMAP1 ZNF48 GTF3C2 GLIS2 ZNF143 ZNF207

Genomic Location for KTN1-AS1 Gene

Chromosome:
14
Start:
55,499,278 bp from pter
End:
55,580,110 bp from pter
Size:
80,833 bases
Orientation:
Minus strand

Genomic View for KTN1-AS1 Gene

Genes around KTN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KTN1-AS1 Gene

Proteins for KTN1-AS1 Gene

  • Protein details for KTN1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86SY8-KTAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein KTN1-AS1
    Protein Accession:
    Q86SY8

    Protein attributes for KTN1-AS1 Gene

    Size:
    53 amino acids
    Molecular mass:
    5770 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD62624.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KTN1-AS1 Gene

Post-translational modifications for KTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KTN1-AS1 Gene

Domains & Families for KTN1-AS1 Gene

Protein Domains for KTN1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KTN1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KTN1-AS1 Gene

Function for KTN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KTN1-AS1 Gene

Localization for KTN1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KTN1-AS1 Gene COMPARTMENTS Subcellular localization image for KTN1-AS1 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for KTN1-AS1 Gene

Pathways & Interactions for KTN1-AS1 Gene

SuperPathways for KTN1-AS1 Gene

No Data Available

Interacting Proteins for KTN1-AS1 Gene

Gene Ontology (GO) - Biological Process for KTN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KTN1-AS1 Gene

Transcripts for KTN1-AS1 Gene

mRNA/cDNA for KTN1-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KTN1-AS1 Gene

KTN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KTN1-AS1 Gene

No ASD Table

Relevant External Links for KTN1-AS1 Gene

GeneLoc Exon Structure for
KTN1-AS1
ECgene alternative splicing isoforms for
KTN1-AS1

Expression for KTN1-AS1 Gene

mRNA expression in normal human tissues for KTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for KTN1-AS1 Gene:

Hs.633724
genes like me logo Genes that share expression patterns with KTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KTN1-AS1 Gene

Orthologs for KTN1-AS1 Gene

Evolution for KTN1-AS1 Gene

ENSEMBL:
Gene Tree for KTN1-AS1 (if available)
TreeFam:
Gene Tree for KTN1-AS1 (if available)

No data available for Orthologs for KTN1-AS1 Gene

Paralogs for KTN1-AS1 Gene

No data available for Paralogs for KTN1-AS1 Gene

Variants for KTN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KTN1-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10083493 -- 55,578,693(+) AGAGA(C/T)AGATT nc-transcript-variant, upstream-variant-2KB
rs10138893 -- 55,579,843(+) GATAG(G/T)CAGGG intron-variant, upstream-variant-2KB
rs10142497 -- 55,581,230(+) CTAGA(C/T)GTGGG intron-variant, upstream-variant-2KB
rs10142739 -- 55,577,343(+) TCCAG(C/T)TGCTT nc-transcript-variant
rs10146397 -- 55,578,851(+) ATACA(C/T)TGCGC intron-variant, upstream-variant-2KB

Relevant External Links for KTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KTN1-AS1 Gene

Disorders for KTN1-AS1 Gene

Relevant External Links for KTN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KTN1-AS1

No disorders were found for KTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KTN1-AS1 Gene

Publications for KTN1-AS1 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T. … Croce C.M. (J. Natl. Cancer Inst. 2015) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for KTN1-AS1 Gene

Sources for KTN1-AS1 Gene

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