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Aliases for KRTAP5-AS1 Gene

Subcategory (RNA class) for KRTAP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KRTAP5-AS1 Gene

  • KRTAP5-1/KRTAP5-2 Antisense RNA 1 2 3 5

External Ids for KRTAP5-AS1 Gene

Previous GeneCards Identifiers for KRTAP5-AS1 Gene

  • GC11P001592

Summaries for KRTAP5-AS1 Gene

GeneCards Summary for KRTAP5-AS1 Gene

KRTAP5-AS1 (KRTAP5-1/KRTAP5-2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP5-AS1 Gene

Genomics for KRTAP5-AS1 Gene

Regulatory Elements for KRTAP5-AS1 Gene

Enhancers for KRTAP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F001605 0.2 ENCODE 26.7 +34.7 34736 0.8 NBN MLLT1 ETV6 SPI1 KRTAP5-AS1 KRTAP5-5 KRTAP5-1 DUSP8 FAM99B LOC100505570 KRTAP5-6 KRTAP5-3 GC11P001598
GH11F001588 0.8 Ensembl ENCODE 23.1 +17.8 17759 1.8 GATAD2A ELF3 SAP130 FOXA3 CEBPB MNT KAT8 GABPB1 CEBPA ETV4 KRTAP5-AS1 MOB2 GC11M001589 KRTAP5-1
GH11F001567 0.7 ENCODE 22.1 -0.4 -351 8.0 PKNOX1 ATF1 ZFP64 ZNF2 ZNF121 GLIS2 ZNF143 FOS ZNF263 SP3 KRTAP5-AS1 KRTAP5-2 KRTAP5-5 MOB2 GC11M001565
GH11F001564 0.9 Ensembl ENCODE 21.8 -6.6 -6640 1.2 PKNOX1 ATF1 JUN ZNF140 GLIS2 POLR2A PATZ1 NFYB PRDM10 FOS KRTAP5-AS1 KRTAP5-2 PHRF1 KRTAP5-5 ENSG00000255142 ENSG00000255158 GC11M001565 GC11M001556
GH11F001556 0.9 Ensembl ENCODE 21.8 -12.6 -12622 4.5 KLF17 GLIS2 RCOR1 EGR2 CEBPB USF2 GLIS1 WT1 CTCF KLF1 KRTAP5-AS1 MOB2 KRTAP5-1 KRTAP5-2 GC11M001556 GC11M001565
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KRTAP5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KRTAP5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000557133 947 2601 PKNOX1 ATF1 ZNF2 GLIS2 FOS CREM SP3 NFYC ZNF341 GLIS1

Genomic Location for KRTAP5-AS1 Gene

Chromosome:
11
Start:
1,571,353 bp from pter
End:
1,599,184 bp from pter
Size:
27,832 bases
Orientation:
Plus strand

Genomic View for KRTAP5-AS1 Gene

Genes around KRTAP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRTAP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRTAP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP5-AS1 Gene

Proteins for KRTAP5-AS1 Gene

Post-translational modifications for KRTAP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRTAP5-AS1 Gene

Domains & Families for KRTAP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRTAP5-AS1 Gene

Function for KRTAP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRTAP5-AS1 Gene

Localization for KRTAP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRTAP5-AS1 Gene

Pathways & Interactions for KRTAP5-AS1 Gene

SuperPathways for KRTAP5-AS1 Gene

No Data Available

Interacting Proteins for KRTAP5-AS1 Gene

Gene Ontology (GO) - Biological Process for KRTAP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRTAP5-AS1 Gene

Transcripts for KRTAP5-AS1 Gene

mRNA/cDNA for KRTAP5-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP5-AS1 Gene

No ASD Table

Relevant External Links for KRTAP5-AS1 Gene

GeneLoc Exon Structure for
KRTAP5-AS1
ECgene alternative splicing isoforms for
KRTAP5-AS1

Expression for KRTAP5-AS1 Gene

mRNA expression in normal human tissues for KRTAP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP5-AS1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x7.8), Brain - Cerebellar Hemisphere (x6.8), and Brain - Cerebellum (x5.2).
genes like me logo Genes that share expression patterns with KRTAP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KRTAP5-AS1 Gene

Orthologs for KRTAP5-AS1 Gene

Evolution for KRTAP5-AS1 Gene

ENSEMBL:
Gene Tree for KRTAP5-AS1 (if available)
TreeFam:
Gene Tree for KRTAP5-AS1 (if available)

No data available for Orthologs for KRTAP5-AS1 Gene

Paralogs for KRTAP5-AS1 Gene

No data available for Paralogs for KRTAP5-AS1 Gene

Variants for KRTAP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for KRTAP5-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10734456 -- 1,586,116(+) TGTTC(A/C)TCCAT intron-variant, upstream-variant-2KB
rs10742442 -- 1,587,592(+) CAGGC(A/G)CGTGC intron-variant
rs10768430 -- 1,588,586(+) CTCAT(C/T)GGTTT intron-variant
rs10768561 -- 1,599,137(+) AAATC(A/G)AAACC nc-transcript-variant, upstream-variant-2KB
rs10836855 -- 1,577,427(+) TGGTG(C/T)GATCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KRTAP5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2743945 CNV deletion 23290073
esv2761643 CNV gain 21179565
nsv1051627 CNV gain 25217958
nsv1129508 CNV tandem duplication 24896259
nsv481162 CNV novel sequence insertion 20440878
nsv552999 CNV gain 21841781
nsv975871 CNV duplication 23825009

Relevant External Links for KRTAP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRTAP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRTAP5-AS1 Gene

Disorders for KRTAP5-AS1 Gene

Relevant External Links for KRTAP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRTAP5-AS1

No disorders were found for KRTAP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRTAP5-AS1 Gene

Publications for KRTAP5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for KRTAP5-AS1 Gene

Sources for KRTAP5-AS1 Gene

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