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Aliases for KRTAP5-9 Gene

Aliases for KRTAP5-9 Gene

  • Keratin Associated Protein 5-9 2 3
  • KRN1 3 4 6
  • Ultrahigh Sulfur Keratin-Associated Protein 5.9 3 4
  • Keratin, Ultra High-Sulfur Matrix Protein A 3 4
  • Keratin, Cuticle, Ultrahigh Sulfur 1 3 4
  • Keratin-Associated Protein 5.9 3 4
  • UHS Keratin A 3 4
  • UHS KerA 3 4
  • KRTAP5.9 3 4
  • Keratin, Cuticle, Ultrahigh Sulphur 1 3
  • Keratin-Associated Protein 5-9 3
  • KRTAP5-1 3
  • KAP5.9 4
  • UHSK1 4

External Ids for KRTAP5-9 Gene

Previous HGNC Symbols for KRTAP5-9 Gene

  • KRN1

Previous GeneCards Identifiers for KRTAP5-9 Gene

  • GC00U913946
  • GC11P070938
  • GC11P071259

Summaries for KRTAP5-9 Gene

GeneCards Summary for KRTAP5-9 Gene

KRTAP5-9 (Keratin Associated Protein 5-9) is a Protein Coding gene.

UniProtKB/Swiss-Prot for KRTAP5-9 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated protein (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP5-9 Gene

Genomics for KRTAP5-9 Gene

Regulatory Elements for KRTAP5-9 Gene

Genomic Location for KRTAP5-9 Gene

Start:
71,548,418 bp from pter
End:
71,549,607 bp from pter
Size:
1,190 bases
Orientation:
Plus strand

Genomic View for KRTAP5-9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRTAP5-9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP5-9 Gene

Proteins for KRTAP5-9 Gene

  • Protein details for KRTAP5-9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P26371-KRA59_HUMAN
    Recommended name:
    Keratin-associated protein 5-9
    Protein Accession:
    P26371
    Secondary Accessions:
    • Q14564
    • Q3MIP8

    Protein attributes for KRTAP5-9 Gene

    Size:
    169 amino acids
    Molecular mass:
    16276 Da
    Quaternary structure:
    • Interacts with hair keratins

neXtProt entry for KRTAP5-9 Gene

Proteomics data for KRTAP5-9 Gene at MOPED

Post-translational modifications for KRTAP5-9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRTAP5-9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP5-9 Gene

Domains for KRTAP5-9 Gene

Gene Families for KRTAP5-9 Gene

HGNC:
  • KRTAP :Keratin associated proteins

Protein Domains for KRTAP5-9 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP5-9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P26371

UniProtKB/Swiss-Prot:

KRA59_HUMAN :
  • P26371
Family:
  • Belongs to the KRTAP type 5 family.
genes like me logo Genes that share domains with KRTAP5-9: view

Function for KRTAP5-9 Gene

Molecular function for KRTAP5-9 Gene

UniProtKB/Swiss-Prot Function: In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated protein (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

Gene Ontology (GO) - Molecular Function for KRTAP5-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21516116
genes like me logo Genes that share ontologies with KRTAP5-9: view

Phenotypes for KRTAP5-9 Gene

genes like me logo Genes that share phenotypes with KRTAP5-9: view

Animal Model Products

CRISPR Products

miRNA for KRTAP5-9 Gene

miRTarBase miRNAs that target KRTAP5-9

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP5-9

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for KRTAP5-9 Gene

Localization for KRTAP5-9 Gene

Gene Ontology (GO) - Cellular Components for KRTAP5-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045095 keratin filament IEA --
genes like me logo Genes that share ontologies with KRTAP5-9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for KRTAP5-9 Gene

Pathways for KRTAP5-9 Gene

SuperPathways for KRTAP5-9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRTAP5-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008544 epidermis development TAS 1703541
genes like me logo Genes that share ontologies with KRTAP5-9: view

No data available for Pathways by source for KRTAP5-9 Gene

Transcripts for KRTAP5-9 Gene

mRNA/cDNA for KRTAP5-9 Gene

(7) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRTAP5-9 Gene

Keratin associated protein 5-9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP5-9

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for KRTAP5-9
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP5-9 Gene

No ASD Table

Relevant External Links for KRTAP5-9 Gene

GeneLoc Exon Structure for
KRTAP5-9
ECgene alternative splicing isoforms for
KRTAP5-9

Expression for KRTAP5-9 Gene

mRNA expression in normal human tissues for KRTAP5-9 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP5-9 Gene

This gene is overexpressed in Testis (5.3).

SOURCE GeneReport for Unigene cluster for KRTAP5-9 Gene Hs.709220

mRNA Expression by UniProt/SwissProt for KRTAP5-9 Gene

P26371-KRA59_HUMAN
Tissue specificity: Restricted to hair root, not detected in any other tissues. Expressed in cuticle layers of differentiating hair follicles.
genes like me logo Genes that share expressions with KRTAP5-9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein expression for KRTAP5-9 Gene

Orthologs for KRTAP5-9 Gene

Evolution for KRTAP5-9 Gene

ENSEMBL:
Gene Tree for KRTAP5-9 (if available)
TreeFam:
Gene Tree for KRTAP5-9 (if available)

No data available for Orthologs for KRTAP5-9 Gene

Paralogs for KRTAP5-9 Gene

No data available for Paralogs for KRTAP5-9 Gene

Variants for KRTAP5-9 Gene

Sequence variations from dbSNP and Humsavar for KRTAP5-9 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs2663 -- 71,549,250(+) TTCTG(A/G)ATCTG utr-variant-3-prime
rs2664 -- 71,549,197(+) GCTCC(C/T)GAAGA utr-variant-3-prime
rs2665 -- 71,549,302(+) GGAAA(A/T)GGAAT utr-variant-3-prime
rs4245 -- 71,549,207(+) ATCTG(C/T)GCTTT utr-variant-3-prime
rs760420 -- 71,548,456(+) GGGCT(C/T)ATACT utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for KRTAP5-9 Gene

Variant ID Type Subtype PubMed ID
dgv1217n71 CNV Gain 21882294
esv2744750 CNV Deletion 23290073

Relevant External Links for KRTAP5-9 Gene

HapMap Linkage Disequilibrium report
KRTAP5-9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRTAP5-9 Gene

Disorders for KRTAP5-9 Gene

No disorders were found for KRTAP5-9 Gene.

No data available for UniProtKB/Swiss-Prot for KRTAP5-9 Gene

Publications for KRTAP5-9 Gene

  1. Identification of two novel clusters of ultrahigh-sulfur keratin- associated protein genes on human chromosome 11. (PMID: 15144888) Yahagi S. … Shimizu N. (Biochem. Biophys. Res. Commun. 2004) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Structure and expression of genes for a class of cysteine-rich proteins of the cuticle layers of differentiating wool and hair follicles. (PMID: 1703541) McKinnon P.J. … Rogers G.E. (J. Cell Biol. 1990) 3 4
  4. Genomic organization and promoter characterization of two human UHS keratin genes. (PMID: 10023043) Perez C. … Egly J.-M. (Gene 1999) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for KRTAP5-9 Gene

Sources for KRTAP5-9 Gene

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