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Aliases for KRTAP4-11 Gene

Aliases for KRTAP4-11 Gene

  • Keratin Associated Protein 4-11 2 3
  • Ultrahigh Sulfur Keratin-Associated Protein 4.14 3 4
  • Keratin Associated Protein 4-14 2 3
  • Keratin-Associated Protein 4-14 3 4
  • Keratin-Associated Protein 4.11 3 4
  • Keratin-Associated Protein 4.14 3 4
  • KRTAP4-14 3 4
  • KRTAP4.14 3 4
  • KAP4.14 3 4
  • Keratin-Associated Protein 4-11 3
  • KRTAP4.11 4
  • KAP4.11 3

External Ids for KRTAP4-11 Gene

Previous HGNC Symbols for KRTAP4-11 Gene

  • KRTAP4-14

Previous GeneCards Identifiers for KRTAP4-11 Gene

  • GC17U990270
  • GC17P8H0011
  • GC17M036530
  • GC17M039273

Summaries for KRTAP4-11 Gene

Entrez Gene Summary for KRTAP4-11 Gene

  • This protein is a member of the keratin-associated protein (KAP) family. The KAP proteins form a matrix of keratin intermediate filaments which contribute to the structure of hair fibers. KAP family members appear to have unique, family-specific amino- and carboxyl-terminal regions and are subdivided into three multi-gene families according to amino acid composition: the high sulfur, the ultrahigh sulfur, and the high tyrosine/glycine KAPs. This protein is a member of the ultrahigh sulfur KAP family and the gene is localized to a cluster of KAPs at 17q12-q21. [provided by RefSeq, Mar 2009]

GeneCards Summary for KRTAP4-11 Gene

KRTAP4-11 (Keratin Associated Protein 4-11) is a Protein Coding gene. An important paralog of this gene is KRTAP4-4.

UniProtKB/Swiss-Prot for KRTAP4-11 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP4-11 Gene

Genomics for KRTAP4-11 Gene

Regulatory Elements for KRTAP4-11 Gene

Genomic Location for KRTAP4-11 Gene

Start:
41,117,181 bp from pter
End:
41,118,360 bp from pter
Size:
1,180 bases
Orientation:
Minus strand

Genomic View for KRTAP4-11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRTAP4-11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP4-11 Gene

Proteins for KRTAP4-11 Gene

  • Protein details for KRTAP4-11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYQ6-KR411_HUMAN
    Recommended name:
    Keratin-associated protein 4-11
    Protein Accession:
    Q9BYQ6
    Secondary Accessions:
    • A0AUY2

    Protein attributes for KRTAP4-11 Gene

    Size:
    195 amino acids
    Molecular mass:
    20927 Da
    Quaternary structure:
    • Interacts with hair keratins

neXtProt entry for KRTAP4-11 Gene

Proteomics data for KRTAP4-11 Gene at MOPED

Post-translational modifications for KRTAP4-11 Gene

No Post-translational modifications

Other Protein References for KRTAP4-11 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP4-11 Gene

Domains for KRTAP4-11 Gene

Gene Families for KRTAP4-11 Gene

HGNC:
  • KRTAP :Keratin associated proteins

Protein Domains for KRTAP4-11 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP4-11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYQ6

UniProtKB/Swiss-Prot:

KR411_HUMAN :
  • Q9BYQ6
Family:
  • Belongs to the KRTAP type 4 family.
genes like me logo Genes that share domains with KRTAP4-11: view

Function for KRTAP4-11 Gene

Molecular function for KRTAP4-11 Gene

UniProtKB/Swiss-Prot Function: In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

Gene Ontology (GO) - Molecular Function for KRTAP4-11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KRTAP4-11: view

Phenotypes for KRTAP4-11 Gene

GenomeRNAi human phenotypes for KRTAP4-11:
genes like me logo Genes that share phenotypes with KRTAP4-11: view

Animal Model Products

CRISPR Products

miRNA for KRTAP4-11 Gene

miRTarBase miRNAs that target KRTAP4-11

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for KRTAP4-11 Gene

Localization for KRTAP4-11 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRTAP4-11 Gene COMPARTMENTS Subcellular localization image for KRTAP4-11 gene
Compartment Confidence
cytoskeleton 2
extracellular 2
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for KRTAP4-11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045095 keratin filament IEA --
genes like me logo Genes that share ontologies with KRTAP4-11: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRTAP4-11 Gene

Pathways for KRTAP4-11 Gene

SuperPathways for KRTAP4-11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRTAP4-11 Gene

None

No data available for Pathways by source for KRTAP4-11 Gene

Transcripts for KRTAP4-11 Gene

mRNA/cDNA for KRTAP4-11 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRTAP4-11
    • Block miRNA regulation of KRTAP4-11 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP4-11

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP4-11 Gene

    No ASD Table

    Relevant External Links for KRTAP4-11 Gene

    GeneLoc Exon Structure for
    KRTAP4-11
    ECgene alternative splicing isoforms for
    KRTAP4-11

    Expression for KRTAP4-11 Gene

    mRNA expression in normal human tissues for KRTAP4-11 Gene

    mRNA differential expression in normal tissues according to GTEx for KRTAP4-11 Gene

    This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (47.5) and Skin - Sun Exposed (Lower leg) (5.3).

    SOURCE GeneReport for Unigene cluster for KRTAP4-11 Gene Hs.307015

    mRNA Expression by UniProt/SwissProt for KRTAP4-11 Gene

    Q9BYQ6-KR411_HUMAN
    Tissue specificity: Expressed in the hair follicles.
    genes like me logo Genes that share expressions with KRTAP4-11: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein expression for KRTAP4-11 Gene

    Orthologs for KRTAP4-11 Gene

    This gene was present in the common ancestor of mammals.

    Orthologs for KRTAP4-11 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia KRTAP4-11 36
    • 96 (a)
    OneToOne
    LOC100613382 35
    • 96.07 (n)
    • 92.82 (a)
    cow
    (Bos Taurus)
    Mammalia -- 36
    • 69 (a)
    ManyToMany
    -- 36
    • 70 (a)
    ManyToMany
    -- 36
    • 69 (a)
    ManyToMany
    -- 36
    • 70 (a)
    ManyToMany
    -- 36
    • 71 (a)
    ManyToMany
    KRTAP4-7 36
    • 71 (a)
    ManyToMany
    mouse
    (Mus musculus)
    Mammalia Gm11555 36
    • 74 (a)
    ManyToMany
    Gm11563 36
    • 82 (a)
    ManyToMany
    Krtap4-1 36
    • 73 (a)
    ManyToMany
    Krtap4-2 36
    • 74 (a)
    ManyToMany
    Krtap4-7 16
    Krtap4-7 36
    • 73 (a)
    ManyToMany
    rat
    (Rattus norvegicus)
    Mammalia Krtap4-7 35
    • 78.11 (n)
    • 72.19 (a)
    Species with no ortholog for KRTAP4-11:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for KRTAP4-11 Gene

    ENSEMBL:
    Gene Tree for KRTAP4-11 (if available)
    TreeFam:
    Gene Tree for KRTAP4-11 (if available)

    Paralogs for KRTAP4-11 Gene

    Selected SIMAP similar genes for KRTAP4-11 Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with KRTAP4-11: view

    Variants for KRTAP4-11 Gene

    Polymorphic Variants from UniProtKB/Swiss-Prot for KRTAP4-11 Gene

    Q9BYQ6-KR411_HUMAN
    Numerous size polymorphism are present in KRTAP4 gene family, which are mainly due to variations in the sequence encoding cysteine-rich repeat segments

    Sequence variations from dbSNP and Humsavar for KRTAP4-11 Gene

    SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
    rs168396 -- 41,117,060(+) CATCC(C/T)TGAAG downstream-variant-500B
    rs349766 -- 41,118,879(+) TGGTC(A/G)GGCAG upstream-variant-2KB
    rs349767 -- 41,119,226(+) tttca(C/T)catgt upstream-variant-2KB
    rs349768 -- 41,119,710(+) AACCT(C/T)ATGAA upstream-variant-2KB
    rs349770 -- 41,116,864(+) CCTTT(A/T)AAATT downstream-variant-500B

    Structural Variations from Database of Genomic Variants (DGV) for KRTAP4-11 Gene

    Variant ID Type Subtype PubMed ID
    nsv9550 CNV Loss 18304495
    dgv3167n71 CNV Loss 21882294
    nsv908232 CNV Loss 21882294
    nsv833446 CNV Gain 17160897
    esv1007843 CNV Deletion 20482838
    esv26633 CNV Loss 19812545
    esv993415 CNV Loss 20482838
    nsv442418 CNV CNV 18776908
    nsv112423 CNV Loss 16902084

    Relevant External Links for KRTAP4-11 Gene

    HapMap Linkage Disequilibrium report
    KRTAP4-11

    Disorders for KRTAP4-11 Gene

    No disorders were found for KRTAP4-11 Gene.

    No data available for UniProtKB/Swiss-Prot for KRTAP4-11 Gene

    Publications for KRTAP4-11 Gene

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
    2. Size polymorphisms in the human ultrahigh sulfur hair keratin- associated protein 4, KAP4, gene family. (PMID: 15955084) Kariya N. … Ito M. (J. Invest. Dermatol. 2005) 3 4
    3. Characterization of a cluster of human high/ultrahigh sulfur keratin- associated protein genes embedded in the type I keratin gene domain on chromosome 17q12-21. (PMID: 11279113) Rogers M.A. … Schweizer J. (J. Biol. Chem. 2001) 3 4
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

    Products for KRTAP4-11 Gene

    Sources for KRTAP4-11 Gene

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