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Aliases for KRTAP20-3 Gene

Aliases for KRTAP20-3 Gene

  • Keratin Associated Protein 20-3 2 3
  • Keratin Associated Protein 19 Pseudogene 4 2 3
  • KAP20.3 3 4
  • Keratin-Associated Protein 20-3 3
  • KRTAP19P4 3
  • KAP19D 3

External Ids for KRTAP20-3 Gene

Previous HGNC Symbols for KRTAP20-3 Gene

  • KRTAP19P4

Previous GeneCards Identifiers for KRTAP20-3 Gene

  • GC21P030938
  • GC21P032015
  • GC21P017423

Summaries for KRTAP20-3 Gene

GeneCards Summary for KRTAP20-3 Gene

KRTAP20-3 (Keratin Associated Protein 20-3) is a Protein Coding gene.

UniProtKB/Swiss-Prot for KRTAP20-3 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP20-3 Gene

Genomics for KRTAP20-3 Gene

Regulatory Elements for KRTAP20-3 Gene

Genomic Location for KRTAP20-3 Gene

Start:
30,642,864 bp from pter
End:
30,643,136 bp from pter
Size:
273 bases
Orientation:
Plus strand

Genomic View for KRTAP20-3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRTAP20-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP20-3 Gene

Proteins for KRTAP20-3 Gene

  • Protein details for KRTAP20-3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3LI60-KR203_HUMAN
    Recommended name:
    Keratin-associated protein 20-3
    Protein Accession:
    Q3LI60
    Secondary Accessions:

    Protein attributes for KRTAP20-3 Gene

    Size:
    44 amino acids
    Molecular mass:
    4909 Da
    Quaternary structure:
    • Interacts with hair keratins.

neXtProt entry for KRTAP20-3 Gene

Proteomics data for KRTAP20-3 Gene at MOPED

Post-translational modifications for KRTAP20-3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRTAP20-3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP20-3 Gene

Domains for KRTAP20-3 Gene

Gene Families for KRTAP20-3 Gene

HGNC:
  • KRTAP :Keratin associated proteins

Protein Domains for KRTAP20-3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP20-3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3LI60

UniProtKB/Swiss-Prot:

KR203_HUMAN :
  • Q3LI60
Family:
  • Belongs to the KRTAP type 20 family.
genes like me logo Genes that share domains with KRTAP20-3: view

Function for KRTAP20-3 Gene

Molecular function for KRTAP20-3 Gene

UniProtKB/Swiss-Prot Function: In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRTAP20-3 Gene

Localization for KRTAP20-3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRTAP20-3 Gene COMPARTMENTS Subcellular localization image for KRTAP20-3 gene
Compartment Confidence
cytoskeleton 3
extracellular 3
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for KRTAP20-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005882 intermediate filament IEA --
genes like me logo Genes that share ontologies with KRTAP20-3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRTAP20-3 Gene

Pathways for KRTAP20-3 Gene

SuperPathways for KRTAP20-3 Gene

No Data Available

Interacting Proteins for KRTAP20-3 Gene

Gene Ontology (GO) - Biological Process for KRTAP20-3 Gene

None

No data available for Pathways by source for KRTAP20-3 Gene

Transcripts for KRTAP20-3 Gene

mRNA/cDNA for KRTAP20-3 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRTAP20-3
    • Block miRNA regulation of KRTAP20-3 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP20-3

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP20-3 Gene

    No ASD Table

    Relevant External Links for KRTAP20-3 Gene

    GeneLoc Exon Structure for
    KRTAP20-3
    ECgene alternative splicing isoforms for
    KRTAP20-3

    Expression for KRTAP20-3 Gene

    mRNA expression in normal human tissues for KRTAP20-3 Gene

    SOURCE GeneReport for Unigene cluster for KRTAP20-3 Gene Hs.580878

    genes like me logo Genes that share expressions with KRTAP20-3: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for KRTAP20-3 Gene

    Orthologs for KRTAP20-3 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for KRTAP20-3 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia KRTAP20-3 36
    • 100 (a)
    OneToOne
    Species with no ortholog for KRTAP20-3:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for KRTAP20-3 Gene

    ENSEMBL:
    Gene Tree for KRTAP20-3 (if available)
    TreeFam:
    Gene Tree for KRTAP20-3 (if available)

    Paralogs for KRTAP20-3 Gene

    No data available for Paralogs for KRTAP20-3 Gene

    Variants for KRTAP20-3 Gene

    Sequence variations from dbSNP and Humsavar for KRTAP20-3 Gene

    SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
    rs198873 -- 30,642,851(+) ACTTA(C/T)GCTGG upstream-variant-2KB
    rs2832964 -- 30,641,693(+) AAATT(A/C)ATAGT upstream-variant-2KB
    rs2832965 -- 30,641,944(+) GAATA(A/G)TATGT upstream-variant-2KB
    rs9975398 -- 30,642,338(+) tgctg(C/G)cggag upstream-variant-2KB
    rs9975399 -- 30,642,339(+) gctgc(C/G)ggagt upstream-variant-2KB

    Structural Variations from Database of Genomic Variants (DGV) for KRTAP20-3 Gene

    Variant ID Type Subtype PubMed ID
    nsv913677 CNV Loss 21882294

    Relevant External Links for KRTAP20-3 Gene

    HapMap Linkage Disequilibrium report
    KRTAP20-3

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRTAP20-3 Gene

    Disorders for KRTAP20-3 Gene

    No disorders were found for KRTAP20-3 Gene.

    No data available for UniProtKB/Swiss-Prot for KRTAP20-3 Gene

    Publications for KRTAP20-3 Gene

    1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3
    2. Characterization of a first domain of human high glycine-tyrosine and high sulfur keratin-associated protein (KAP) genes on chromosome 21q22.1. (PMID: 12359730) Rogers M.A. … Schweizer J. (J. Biol. Chem. 2002) 3

    Products for KRTAP20-3 Gene

    Sources for KRTAP20-3 Gene

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