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Aliases for KRTAP19-5 Gene

Aliases for KRTAP19-5 Gene

  • Keratin Associated Protein 19-5 2 3
  • KAP19.5 3 4
  • Keratin-Associated Protein 19-5 3

External Ids for KRTAP19-5 Gene

Summaries for KRTAP19-5 Gene

GeneCards Summary for KRTAP19-5 Gene

KRTAP19-5 (Keratin Associated Protein 19-5) is a Protein Coding gene.

UniProtKB/Swiss-Prot for KRTAP19-5 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP19-5 Gene

Genomics for KRTAP19-5 Gene

Genomic Location for KRTAP19-5 Gene

Start:
30,501,657 bp from pter
End:
30,502,117 bp from pter
Size:
461 bases
Orientation:
Minus strand

Genomic View for KRTAP19-5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRTAP19-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP19-5 Gene

Regulatory Elements for KRTAP19-5 Gene

Proteins for KRTAP19-5 Gene

  • Protein details for KRTAP19-5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3LI72-KR195_HUMAN
    Recommended name:
    Keratin-associated protein 19-5
    Protein Accession:
    Q3LI72
    Secondary Accessions:
    • A4IF22

    Protein attributes for KRTAP19-5 Gene

    Size:
    72 amino acids
    Molecular mass:
    7624 Da
    Quaternary structure:
    • Interacts with hair keratins.

neXtProt entry for KRTAP19-5 Gene

Proteomics data for KRTAP19-5 Gene at MOPED

Post-translational modifications for KRTAP19-5 Gene

No Post-translational modifications

Other Protein References for KRTAP19-5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP19-5 Gene

Domains for KRTAP19-5 Gene

Gene Families for KRTAP19-5 Gene

HGNC:
  • KRTAP :Keratin associated proteins

Protein Domains for KRTAP19-5 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

KR195_HUMAN
Family:
  • Belongs to the KRTAP type 19 family.:
    • Q3LI72
genes like me logo Genes that share domains with KRTAP19-5: view

Function for KRTAP19-5 Gene

Molecular function for KRTAP19-5 Gene

UniProtKB/Swiss-Prot Function: In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

Gene Ontology (GO) - Molecular Function for KRTAP19-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KRTAP19-5: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRTAP19-5 Gene

Localization for KRTAP19-5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRTAP19-5 Gene COMPARTMENTS Subcellular localization image for KRTAP19-5 gene
Compartment Confidence
cytoskeleton 3
extracellular 3
cytosol 1

Gene Ontology (GO) - Cellular Components for KRTAP19-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005882 intermediate filament IEA --
genes like me logo Genes that share ontologies with KRTAP19-5: view

Pathways for KRTAP19-5 Gene

SuperPathways for KRTAP19-5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRTAP19-5 Gene

None

No data available for Pathways by source for KRTAP19-5 Gene

Transcripts for KRTAP19-5 Gene

mRNA/cDNA for KRTAP19-5 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP19-5 Gene

No ASD Table

Relevant External Links for KRTAP19-5 Gene

GeneLoc Exon Structure for
KRTAP19-5
ECgene alternative splicing isoforms for
KRTAP19-5

Expression for KRTAP19-5 Gene

mRNA expression in normal human tissues for KRTAP19-5 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP19-5 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (48.3) and Skin - Sun Exposed (Lower leg) (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for KRTAP19-5 Gene

SOURCE GeneReport for Unigene cluster for KRTAP19-5 Gene Hs.553694

genes like me logo Genes that share expressions with KRTAP19-5: view

Orthologs for KRTAP19-5 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for KRTAP19-5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KRTAP19-5 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Krtap19-5 16
Species with no ortholog for KRTAP19-5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRTAP19-5 Gene

ENSEMBL:
Gene Tree for KRTAP19-5 (if available)
TreeFam:
Gene Tree for KRTAP19-5 (if available)

Paralogs for KRTAP19-5 Gene

No data available for Paralogs for KRTAP19-5 Gene

Variants for KRTAP19-5 Gene

Sequence variations from dbSNP and Humsavar for KRTAP19-5 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs2105577 -- 30,503,216(+) GTCTC(A/G)CTCTG upstream-variant-2KB
rs5843450 -- 30,503,738(+) GTTTG(-/T)TAACT upstream-variant-2KB
rs9976541 -- 30,503,959(+) TGAAA(C/T)AGATA upstream-variant-2KB
rs58361078 -- 30,502,784(+) TTTGG(C/T)TGCAA upstream-variant-2KB
rs62221778 -- 30,502,396(+) GCACA(C/T)TCCAA upstream-variant-2KB

Relevant External Links for KRTAP19-5 Gene

HapMap Linkage Disequilibrium report
KRTAP19-5

No data available for Structural Variations from Database of Genomic Variants (DGV) for KRTAP19-5 Gene

Disorders for KRTAP19-5 Gene

No disorders were found for KRTAP19-5 Gene.

No data available for UniProtKB/Swiss-Prot for KRTAP19-5 Gene

Publications for KRTAP19-5 Gene

  1. Characterization of a first domain of human high glycine-tyrosine and high sulfur keratin-associated protein (KAP) genes on chromosome 21q22.1. (PMID: 12359730) Rogers M.A. … Schweizer J. (J. Biol. Chem. 2002) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PMID: 17353931) Ewing R.M. … Figeys D. (Mol. Syst. Biol. 2007) 3
  4. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for KRTAP19-5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRTAP19-5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP19-5
    • Block miRNA regulation of KRTAP19-5 using miScript Target Protectors

    Sources for KRTAP19-5 Gene

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