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Aliases for KRTAP13-1 Gene

Aliases for KRTAP13-1 Gene

  • Keratin Associated Protein 13-1 2 3
  • High Sulfur Keratin-Associated Protein 13.1 3 4
  • KRTAP13.1 3 4
  • KAP13.1 3 4
  • High Sulfur Keratin Associated Protein 13.1 3
  • Keratin-Associated Protein 13-1 3

External Ids for KRTAP13-1 Gene

Previous GeneCards Identifiers for KRTAP13-1 Gene

  • GC21P028428
  • GC21P030688
  • GC21P030690
  • GC21P031768
  • GC21P017177

Summaries for KRTAP13-1 Gene

Entrez Gene Summary for KRTAP13-1 Gene

  • Hair keratins and hair keratin-associated proteins (KAPs), such as KRTAP13-1, are the main structural proteins of hair fibers (Rogers et al., 2002 [PubMed 12359730]).[supplied by OMIM, Mar 2008]

GeneCards Summary for KRTAP13-1 Gene

KRTAP13-1 (Keratin Associated Protein 13-1) is a Protein Coding gene. An important paralog of this gene is KRTAP13-2.

UniProtKB/Swiss-Prot for KRTAP13-1 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP13-1 Gene

Genomics for KRTAP13-1 Gene

Regulatory Elements for KRTAP13-1 Gene

Genomic Location for KRTAP13-1 Gene

Start:
30,396,074 bp from pter
End:
30,396,822 bp from pter
Size:
749 bases
Orientation:
Plus strand

Genomic View for KRTAP13-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRTAP13-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP13-1 Gene

Proteins for KRTAP13-1 Gene

  • Protein details for KRTAP13-1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IUC0-KR131_HUMAN
    Recommended name:
    Keratin-associated protein 13-1
    Protein Accession:
    Q8IUC0
    Secondary Accessions:
    • Q14D20
    • Q3LI79

    Protein attributes for KRTAP13-1 Gene

    Size:
    172 amino acids
    Molecular mass:
    18320 Da
    Quaternary structure:
    • Interacts with hair keratins
    SequenceCaution:
    • Sequence=AAI13537.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI13539.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KRTAP13-1 Gene

Proteomics data for KRTAP13-1 Gene at MOPED

Post-translational modifications for KRTAP13-1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRTAP13-1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP13-1 Gene

Domains for KRTAP13-1 Gene

Gene Families for KRTAP13-1 Gene

HGNC:
  • KRTAP :Keratin associated proteins

Protein Domains for KRTAP13-1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP13-1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IUC0

UniProtKB/Swiss-Prot:

KR131_HUMAN :
  • Q8IUC0
Family:
  • Belongs to the PMG family.
genes like me logo Genes that share domains with KRTAP13-1: view

Function for KRTAP13-1 Gene

Molecular function for KRTAP13-1 Gene

UniProtKB/Swiss-Prot Function: In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRTAP13-1
    • Block miRNA regulation of KRTAP13-1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP13-1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRTAP13-1 Gene

    Localization for KRTAP13-1 Gene

    Subcellular locations from

    COMPARTMENTS
    Jensen Localization Image for KRTAP13-1 Gene COMPARTMENTS Subcellular localization image for KRTAP13-1 gene
    Compartment Confidence
    cytoskeleton 3
    extracellular 2
    cytosol 1
    mitochondrion 1
    nucleus 1
    peroxisome 1

    Gene Ontology (GO) - Cellular Components for KRTAP13-1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0005882 intermediate filament IEA --
    genes like me logo Genes that share ontologies with KRTAP13-1: view

    No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRTAP13-1 Gene

    Pathways for KRTAP13-1 Gene

    SuperPathways for KRTAP13-1 Gene

    No Data Available

    Interacting Proteins for KRTAP13-1 Gene

    Gene Ontology (GO) - Biological Process for KRTAP13-1 Gene

    None

    No data available for Pathways by source for KRTAP13-1 Gene

    Transcripts for KRTAP13-1 Gene

    mRNA/cDNA for KRTAP13-1 Gene

    (2) Selected AceView cDNA sequences:
    (1) REFSEQ mRNAs :
    (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate KRTAP13-1
      • Block miRNA regulation of KRTAP13-1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for KRTAP13-1

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for KRTAP13-1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP13-1 Gene

      No ASD Table

      Relevant External Links for KRTAP13-1 Gene

      GeneLoc Exon Structure for
      KRTAP13-1
      ECgene alternative splicing isoforms for
      KRTAP13-1

      Expression for KRTAP13-1 Gene

      mRNA expression in normal human tissues for KRTAP13-1 Gene

      mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

      mRNA differential expression in normal tissues according to GTEx for KRTAP13-1 Gene

      This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (47.9) and Skin - Sun Exposed (Lower leg) (4.0).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for KRTAP13-1 Gene

      SOURCE GeneReport for Unigene cluster for KRTAP13-1 Gene Hs.407653

      mRNA Expression by UniProt/SwissProt for KRTAP13-1 Gene

      Q8IUC0-KR131_HUMAN
      Tissue specificity: Weak expression seen in the late matrix and entire cortex area of the hair follicle.
      genes like me logo Genes that share expressions with KRTAP13-1: view

      In Situ Assay Products

      Orthologs for KRTAP13-1 Gene

      This gene was present in the common ancestor of mammals.

      Orthologs for KRTAP13-1 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia KRTAP13-1 35
      • 99.22 (n)
      • 98.84 (a)
      KRTAP13-1 36
      • 99 (a)
      OneToOne
      cow
      (Bos Taurus)
      Mammalia -- 36
      • 65 (a)
      OneToMany
      KRTAP13-2 35
      • 79.33 (n)
      • 69.33 (a)
      dog
      (Canis familiaris)
      Mammalia -- 36
      • 71 (a)
      OneToMany
      mouse
      (Mus musculus)
      Mammalia 2310034C09Rik 16
      2310061N02Rik 36
      • 56 (a)
      ManyToMany
      Krtap13-1 35
      • 76.71 (n)
      • 65.66 (a)
      platypus
      (Ornithorhynchus anatinus)
      Mammalia -- 36
      • 55 (a)
      ManyToMany
      -- 36
      • 41 (a)
      ManyToMany
      -- 36
      • 46 (a)
      ManyToMany
      -- 36
      • 49 (a)
      ManyToMany
      -- 36
      • 50 (a)
      ManyToMany
      rat
      (Rattus norvegicus)
      Mammalia LOC100363184 35
      • 78.11 (n)
      • 68.07 (a)
      Species with no ortholog for KRTAP13-1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • rainbow trout (Oncorhynchus mykiss)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for KRTAP13-1 Gene

      ENSEMBL:
      Gene Tree for KRTAP13-1 (if available)
      TreeFam:
      Gene Tree for KRTAP13-1 (if available)

      Paralogs for KRTAP13-1 Gene

      Paralogs for KRTAP13-1 Gene

      Selected SIMAP similar genes for KRTAP13-1 Gene using alignment to 1 proteins:

      Pseudogenes.org Pseudogenes for KRTAP13-1 Gene

      genes like me logo Genes that share paralogs with KRTAP13-1: view

      Variants for KRTAP13-1 Gene

      Sequence variations from dbSNP and Humsavar for KRTAP13-1 Gene

      SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
      rs1004044 -- 30,394,669(+) AGAGG(C/T)GCACA upstream-variant-2KB
      rs1010682 -- 30,396,491(+) GGCTG(A/T)GGCTT stop-gained, reference
      rs1985418 -- 30,396,176(+) TCCTA(A/C)CCCAG stop-gained, reference
      rs2832850 -- 30,396,054(+) CTCAG(C/T)GTAAC upstream-variant-2KB
      rs2832851 -- 30,396,365(+) TGCCA(C/G)ACAAC missense, reference

      Relevant External Links for KRTAP13-1 Gene

      HapMap Linkage Disequilibrium report
      KRTAP13-1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for KRTAP13-1 Gene

      Disorders for KRTAP13-1 Gene

      No disorders were found for KRTAP13-1 Gene.

      No data available for UniProtKB/Swiss-Prot for KRTAP13-1 Gene

      Publications for KRTAP13-1 Gene

      1. Characterization of a first domain of human high glycine-tyrosine and high sulfur keratin-associated protein (KAP) genes on chromosome 21q22.1. (PMID: 12359730) Rogers M.A. … Schweizer J. (J. Biol. Chem. 2002) 2 3 4
      2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 4
      3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
      4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
      5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

      Products for KRTAP13-1 Gene

      Sources for KRTAP13-1 Gene

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