Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KRTAP1-3 Gene

Aliases for KRTAP1-3 Gene

  • Keratin Associated Protein 1-3 2 3 5
  • Keratin-Associated Protein 1.8 3 4
  • Keratin-Associated Protein 1.9 3 4
  • KAP1.2 3 4
  • KAP1.3 3 4
  • KAP1.9 3 4
  • Keratin Associated Protein 1.6 3
  • Keratin-Associated Protein 1-3 3
  • KRTAP1.3 3
  • KRATP1.9 4
  • KRTAP1.8 4
  • KAP1.8A 3
  • KAP1.8B 3
  • KAP1.6 3
  • KAP1.8 4
  • B2B 4

External Ids for KRTAP1-3 Gene

Previous GeneCards Identifiers for KRTAP1-3 Gene

  • GC17M038690
  • GC17M041366
  • GC17M039098
  • GC17M039563
  • GC17M036444
  • GC17P9W0088
  • GC17M039190
  • GC17M034984

Summaries for KRTAP1-3 Gene

Entrez Gene Summary for KRTAP1-3 Gene

  • This protein is a member of the keratin-associated protein (KAP) family. The KAP proteins form a matrix of keratin intermediate filaments which contribute to the structure of hair fibers. KAP family members appear to have unique, family-specific amino- and carboxyl-terminal regions and are subdivided into three multi-gene families according to amino acid composition: the high sulfur, the ultrahigh sulfur, and the high tyrosine/glycine KAPs. This protein is a member of the high sulfur KAP family and the gene is localized to a cluster of KAPs at 17q12-q21. [provided by RefSeq, Jul 2008]

GeneCards Summary for KRTAP1-3 Gene

KRTAP1-3 (Keratin Associated Protein 1-3) is a Protein Coding gene. GO annotations related to this gene include structural constituent of epidermis. An important paralog of this gene is KRTAP1-1.

UniProtKB/Swiss-Prot for KRTAP1-3 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP1-3 Gene

Genomics for KRTAP1-3 Gene

Regulatory Elements for KRTAP1-3 Gene

Enhancers for KRTAP1-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around KRTAP1-3 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRTAP1-3 Gene

Chromosome:
17
Start:
41,033,884 bp from pter
End:
41,034,855 bp from pter
Size:
972 bases
Orientation:
Minus strand

Genomic View for KRTAP1-3 Gene

Genes around KRTAP1-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRTAP1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRTAP1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP1-3 Gene

Proteins for KRTAP1-3 Gene

  • Protein details for KRTAP1-3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IUG1-KRA13_HUMAN
    Recommended name:
    Keratin-associated protein 1-3
    Protein Accession:
    Q8IUG1
    Secondary Accessions:
    • Q07628
    • Q8IUG0
    • Q9BYS2

    Protein attributes for KRTAP1-3 Gene

    Size:
    177 amino acids
    Molecular mass:
    18184 Da
    Quaternary structure:
    • Interacts with hair keratins.

neXtProt entry for KRTAP1-3 Gene

Post-translational modifications for KRTAP1-3 Gene

No Post-translational modifications

Other Protein References for KRTAP1-3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP1-3 Gene

Domains & Families for KRTAP1-3 Gene

Gene Families for KRTAP1-3 Gene

Protein Domains for KRTAP1-3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP1-3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IUG1

UniProtKB/Swiss-Prot:

KRA13_HUMAN :
  • Belongs to the KRTAP type 1 family.
Family:
  • Belongs to the KRTAP type 1 family.
genes like me logo Genes that share domains with KRTAP1-3: view

Function for KRTAP1-3 Gene

Molecular function for KRTAP1-3 Gene

UniProtKB/Swiss-Prot Function:
In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.

Gene Ontology (GO) - Molecular Function for KRTAP1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030280 structural constituent of epidermis NAS 1279380
genes like me logo Genes that share ontologies with KRTAP1-3: view
genes like me logo Genes that share phenotypes with KRTAP1-3: view

Animal Model Products

CRISPR Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRTAP1-3 Gene

Localization for KRTAP1-3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRTAP1-3 Gene COMPARTMENTS Subcellular localization image for KRTAP1-3 gene
Compartment Confidence
cytosol 3
cytoskeleton 2
extracellular 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for KRTAP1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045095 keratin filament IEA --
genes like me logo Genes that share ontologies with KRTAP1-3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRTAP1-3 Gene

Pathways & Interactions for KRTAP1-3 Gene

SuperPathways for KRTAP1-3 Gene

No Data Available

Interacting Proteins for KRTAP1-3 Gene

Gene Ontology (GO) - Biological Process for KRTAP1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with KRTAP1-3: view

No data available for Pathways by source and SIGNOR curated interactions for KRTAP1-3 Gene

Drugs & Compounds for KRTAP1-3 Gene

No Compound Related Data Available

Transcripts for KRTAP1-3 Gene

mRNA/cDNA for KRTAP1-3 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP1-3 Gene

No ASD Table

Relevant External Links for KRTAP1-3 Gene

GeneLoc Exon Structure for
KRTAP1-3
ECgene alternative splicing isoforms for
KRTAP1-3

Expression for KRTAP1-3 Gene

mRNA expression in normal human tissues for KRTAP1-3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KRTAP1-3 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x48.7) and Skin - Sun Exposed (Lower leg) (x4.1).

SOURCE GeneReport for Unigene cluster for KRTAP1-3 Gene:

Hs.534495

mRNA Expression by UniProt/SwissProt for KRTAP1-3 Gene:

Q8IUG1-KRA13_HUMAN
Tissue specificity: Expressed in the middle/upper portions of the hair cortex, in the region termed the keratogenous zone.
genes like me logo Genes that share expression patterns with KRTAP1-3: view

No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for KRTAP1-3 Gene

Orthologs for KRTAP1-3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for KRTAP1-3 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Krtap9-3 34
  • 86.51 (n)
  • 82.44 (a)
Krtap9-3 16
Krtap1-5 35
  • 82 (a)
ManyToMany
Krtap9-3 35
  • 75 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia LOC743364 34
  • 99 (n)
  • 98.8 (a)
KRTAP1-3 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 35
  • 67 (a)
ManyToMany
KRTAP1-1 35
  • 69 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 43 (a)
OneToMany
Species where no ortholog for KRTAP1-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRTAP1-3 Gene

ENSEMBL:
Gene Tree for KRTAP1-3 (if available)
TreeFam:
Gene Tree for KRTAP1-3 (if available)

Paralogs for KRTAP1-3 Gene

Paralogs for KRTAP1-3 Gene

(3) SIMAP similar genes for KRTAP1-3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with KRTAP1-3: view

Variants for KRTAP1-3 Gene

Sequence variations from dbSNP and Humsavar for KRTAP1-3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
VAR_025349 -
VAR_025352 -
rs752377849 -- 41,035,726(+) TTCTT(-/TC)TCTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KRTAP1-3 Gene

Variant ID Type Subtype PubMed ID
esv2659091 CNV deletion 23128226
esv3640559 CNV gain 21293372
esv3640560 CNV gain 21293372
esv3640565 CNV loss 21293372
nsv1116013 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv575002 CNV loss 21841781
nsv575005 CNV loss 21841781
nsv9550 CNV loss 18304495

Variation tolerance for KRTAP1-3 Gene

Residual Variation Intolerance Score: 93.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.20; 61.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KRTAP1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRTAP1-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRTAP1-3 Gene

Disorders for KRTAP1-3 Gene

Relevant External Links for KRTAP1-3

Genetic Association Database (GAD)
KRTAP1-3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRTAP1-3

No disorders were found for KRTAP1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRTAP1-3 Gene

Publications for KRTAP1-3 Gene

  1. Characterization of a cluster of human high/ultrahigh sulfur keratin- associated protein genes embedded in the type I keratin gene domain on chromosome 17q12-21. (PMID: 11279113) Rogers M.A. … Schweizer J. (J. Biol. Chem. 2001) 2 3 4 65
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  3. Polymorphisms in the human high sulfur hair keratin-associated protein 1, KAP1, gene family. (PMID: 12228244) Shimomura Y. … Ito M. (J. Biol. Chem. 2002) 3 4 65
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 65
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for KRTAP1-3 Gene

Sources for KRTAP1-3 Gene

Content
Loading form....