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Aliases for KRT8P41 Gene

Aliases for KRT8P41 Gene

  • Keratin 8 Pseudogene 41 2 3 5

External Ids for KRT8P41 Gene

Summaries for KRT8P41 Gene

GeneCards Summary for KRT8P41 Gene

KRT8P41 (Keratin 8 Pseudogene 41) is a Pseudogene.

Additional gene information for KRT8P41 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT8P41 Gene

Genomics for KRT8P41 Gene

GeneHancer (GH) Regulatory Elements for KRT8P41 Gene

Promoters and enhancers for KRT8P41 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I009093 Enhancer 0.3 ENCODE 550.8 -0.8 -814 0.2 CTCF KRT8P41 MIR5691 SCUBE2
GH11I009091 Promoter 1.2 EPDnew Ensembl 18.7 -2.9 -2862 1 RING1 SUZ12 EZH2 MIR5691 SCUBE2 KRT8P41 TMEM41B
GH11I009313 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 8.4 +220.2 220191 3.2 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 TMEM41B SNORA3B ZNF143 KRT8P41 SCUBE2 DENND5A PRR13P2
GH11I009312 Enhancer 0.5 Ensembl 7.7 +218.0 218038 0.8 SCRT2 CEBPB HMBOX1 ZBTB33 MLLT1 PRR13P2 KRT8P41 TMEM41B
GH11I009288 Enhancer 0.4 FANTOM5 7.8 +194.8 194808 0.3 POLR2A TMEM41B KRT8P41 DENND5A NRIP3 ZNF143 ENSG00000273725 PRR13P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KRT8P41 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT8P41 Gene

Genomic Locations for KRT8P41 Gene
chr11:9,094,363-9,096,190
(GRCh38/hg38)
Size:
1,828 bases
Orientation:
Plus strand
chr11:9,115,910-9,117,737
(GRCh37/hg19)

Genomic View for KRT8P41 Gene

Genes around KRT8P41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT8P41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT8P41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT8P41 Gene

Proteins for KRT8P41 Gene

Post-translational modifications for KRT8P41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT8P41 Gene

Domains & Families for KRT8P41 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT8P41 Gene

Function for KRT8P41 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT8P41 Gene

Localization for KRT8P41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT8P41 Gene

Pathways & Interactions for KRT8P41 Gene

SuperPathways for KRT8P41 Gene

No Data Available

Interacting Proteins for KRT8P41 Gene

Gene Ontology (GO) - Biological Process for KRT8P41 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT8P41 Gene

Drugs & Compounds for KRT8P41 Gene

No Compound Related Data Available

Transcripts for KRT8P41 Gene

mRNA/cDNA for KRT8P41 Gene

(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT8P41 Gene

Keratin 8 pseudogene 41:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT8P41 Gene

No ASD Table

Relevant External Links for KRT8P41 Gene

GeneLoc Exon Structure for
KRT8P41
ECgene alternative splicing isoforms for
KRT8P41

Expression for KRT8P41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT8P41 Gene

mRNA differential expression in normal tissues according to GTEx for KRT8P41 Gene

This gene is overexpressed in Testis (x13.1).

NURSA nuclear receptor signaling pathways regulating expression of KRT8P41 Gene:

KRT8P41

SOURCE GeneReport for Unigene cluster for KRT8P41 Gene:

Hs.689472
genes like me logo Genes that share expression patterns with KRT8P41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT8P41 Gene

Orthologs for KRT8P41 Gene

Evolution for KRT8P41 Gene

ENSEMBL:
Gene Tree for KRT8P41 (if available)
TreeFam:
Gene Tree for KRT8P41 (if available)

No data available for Orthologs for KRT8P41 Gene

Paralogs for KRT8P41 Gene

No data available for Paralogs for KRT8P41 Gene

Variants for KRT8P41 Gene

Sequence variations from dbSNP and Humsavar for KRT8P41 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000154529 -- 9,093,788(+) A/G upstream_transcript_variant
rs1000258414 -- 9,093,999(+) C/T upstream_transcript_variant
rs1000420617 -- 9,092,986(+) C/T upstream_transcript_variant
rs1000804175 -- 9,096,170(+) T/A non_coding_transcript_variant
rs1000804191 -- 9,094,258(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KRT8P41 Gene

Variant ID Type Subtype PubMed ID
esv33264 CNV loss 17666407
nsv499766 OTHER inversion 21111241
nsv553454 CNV loss 21841781
nsv7215 OTHER inversion 18451855
nsv951307 CNV deletion 24416366
nsv982981 CNV duplication 23825009

Additional Variant Information for KRT8P41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT8P41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT8P41 Gene

Disorders for KRT8P41 Gene

Additional Disease Information for KRT8P41

No disorders were found for KRT8P41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT8P41 Gene

Publications for KRT8P41 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for KRT8P41 Gene

Sources for KRT8P41 Gene

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