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Aliases for KRT8P41 Gene

Aliases for KRT8P41 Gene

  • Keratin 8 Pseudogene 41 2 3 5

External Ids for KRT8P41 Gene

Summaries for KRT8P41 Gene

GeneCards Summary for KRT8P41 Gene

KRT8P41 (Keratin 8 Pseudogene 41) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT8P41 Gene

Genomics for KRT8P41 Gene

Regulatory Elements for KRT8P41 Gene

Enhancers for KRT8P41 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F009312 0.2 ENCODE 8.3 +220.2 220192 3.2 HDGF PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TMEM41B KRT8P41 SCUBE2 DENND5A PRR13P2
GH11F009288 0.3 FANTOM5 7.8 +194.8 194808 0.3 POLR2A ZNF384 ZBTB40 TMEM41B KRT8P41 DENND5A NRIP3 ZNF143 ENSG00000273725 PRR13P2
GH11F009093 0.6 ENCODE 0.8 -0.8 -815 0.2 CTCF RAD21 KRT8P41 MIR5691
GH11F009103 0.2 ENCODE 0.4 +9.4 9414 1.3 SCUBE2 TMEM41B KRT8P41 LOC105376542
GH11F009104 0.2 ENCODE 0.4 +10.3 10338 0.5 SAP130 TEAD1 ZNF644 RARA TEAD3 HOMEZ RXRB MIXL1 SCUBE2 TMEM9B-AS1 KRT8P41 LOC105376542
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KRT8P41 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRT8P41 Gene

Chromosome:
11
Start:
9,094,363 bp from pter
End:
9,096,190 bp from pter
Size:
1,828 bases
Orientation:
Plus strand

Genomic View for KRT8P41 Gene

Genes around KRT8P41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT8P41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT8P41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT8P41 Gene

Proteins for KRT8P41 Gene

Post-translational modifications for KRT8P41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT8P41 Gene

Domains & Families for KRT8P41 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT8P41 Gene

Function for KRT8P41 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT8P41 Gene

Localization for KRT8P41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT8P41 Gene

Pathways & Interactions for KRT8P41 Gene

SuperPathways for KRT8P41 Gene

No Data Available

Interacting Proteins for KRT8P41 Gene

Gene Ontology (GO) - Biological Process for KRT8P41 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT8P41 Gene

Transcripts for KRT8P41 Gene

mRNA/cDNA for KRT8P41 Gene

(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT8P41 Gene

Keratin 8 pseudogene 41:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT8P41 Gene

No ASD Table

Relevant External Links for KRT8P41 Gene

GeneLoc Exon Structure for
KRT8P41
ECgene alternative splicing isoforms for
KRT8P41

Expression for KRT8P41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KRT8P41 Gene

mRNA differential expression in normal tissues according to GTEx for KRT8P41 Gene

This gene is overexpressed in Testis (x13.1).

NURSA nuclear receptor signaling pathways regulating expression of KRT8P41 Gene:

KRT8P41

SOURCE GeneReport for Unigene cluster for KRT8P41 Gene:

Hs.689472
genes like me logo Genes that share expression patterns with KRT8P41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KRT8P41 Gene

Orthologs for KRT8P41 Gene

Evolution for KRT8P41 Gene

ENSEMBL:
Gene Tree for KRT8P41 (if available)
TreeFam:
Gene Tree for KRT8P41 (if available)

No data available for Orthologs for KRT8P41 Gene

Paralogs for KRT8P41 Gene

No data available for Paralogs for KRT8P41 Gene

Variants for KRT8P41 Gene

Sequence variations from dbSNP and Humsavar for KRT8P41 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10840170 -- 9,096,351(+) catcc(A/G)aacaa downstream-variant-500B
rs11042176 -- 9,094,811(+) TCATC(A/G)AGAAG nc-transcript-variant
rs111461941 -- 9,093,356(+) TGCAG(C/T)GCCCT upstream-variant-2KB
rs111656681 -- 9,094,743(+) CAACA(-/T)CCAGG nc-transcript-variant
rs113427034 -- 9,095,049(+) GATGG(A/G)GAATG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for KRT8P41 Gene

Variant ID Type Subtype PubMed ID
esv33264 CNV loss 17666407
nsv499766 OTHER inversion 21111241
nsv553454 CNV loss 21841781
nsv7215 OTHER inversion 18451855
nsv951307 CNV deletion 24416366
nsv982981 CNV duplication 23825009

Relevant External Links for KRT8P41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT8P41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT8P41 Gene

Disorders for KRT8P41 Gene

Relevant External Links for KRT8P41

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT8P41

No disorders were found for KRT8P41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT8P41 Gene

Publications for KRT8P41 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for KRT8P41 Gene

Sources for KRT8P41 Gene

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