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KRT82 Gene

protein-coding   GIFtS: 47
GCID: GC12M052787

Keratin 82

(Previous names: keratin, hair, basic, 2)
(Previous symbol: KRTHB2)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Keratin 821 2     Hard Keratin Type II 21
KRTHB21 2 3 5     Hb-22
Keratin, Hair, Basic, 21 2     Hard Keratin, Type II, 22
Type II Hair Keratin Hb22 3     Keratin, Type II Cuticular Hb22
Type-II Keratin Kb222 3     keratin-822
K822 3     Keratin-823
HB22 5     

External Ids:    HGNC: 64591   Entrez Gene: 38882   Ensembl: ENSG000001618507   OMIM: 6010785   UniProtKB: Q9NSB43   

Export aliases for KRT82 gene to outside databases

Previous GC identifers: GC12M051075 GC12M049831


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for KRT82 Gene:
The protein encoded by this gene is a member of the keratin gene family. As a type II hair keratin, it is a basic
protein which heterodimerizes with type I keratins to form hair and nails. The type II hair keratins are
clustered in a region of chromosome 12q13 and are grouped into two distinct subfamilies based on structure
similarity. One subfamily, consisting of KRTHB1, KRTHB3, and KRTHB6, is highly related. The other less-related
subfamily includes KRTHB2, KRTHB4, and KRTHB5. All hair keratins are expressed in the hair follicle; this keratin
appears to be a hair cuticle-specific keratin. (provided by RefSeq, Jul 2008)

GeneCards Summary for KRT82 Gene:
KRT82 (keratin 82) is a protein-coding gene. GO annotations related to this gene include structural constituent of epidermis. An important paralog of this gene is KRT74.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000012.11  NC_018923.2  NT_029419.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the KRT82 gene promoter:
         STAT5B   AML1a   IRF-1   RelA   NF-kappaB   Arnt   PPAR-gamma1   PPAR-gamma2   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKRT82 promoter sequence
   Search Chromatin IP Primers for KRT82

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KRT82


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13   Ensembl cytogenetic band:  12q13.13   HGNC cytogenetic band: 12q13

KRT82 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KRT82 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M052787:  view genomic region     (about GC identifiers)

Start:
52,787,715 bp from pter      End:
52,800,176 bp from pter
Size:
12,462 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: KRT82_HUMAN, Q9NSB4 (See protein sequence)
Recommended Name: Keratin, type II cuticular Hb2  
Size: 513 amino acids; 56653 Da
Subunit: Heterotetramer of two type I and two type II keratins
Miscellaneous: There are two types of hair/microfibrillar keratin, I (acidic) and II (neutral to basic)

Explore the universe of human proteins at neXtProt for KRT82: NX_Q9NSB4

Explore proteomics data for KRT82 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See KRT82 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_149022.3  
    ENSEMBL proteins: 
     ENSP00000257974  

    KRT82 Human Recombinant Protein Products:

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    antibodies-online proteins for KRT82 (3 products) 

     
    antibodies-online peptides for KRT82

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    IFF2: Intermediate filaments type II, keratins (basic)

    3 InterPro protein domains:
     IPR018039 Intermediate_filament_CS
     IPR001664 IF
     IPR003054 Keratin_II

    Graphical View of Domain Structure for InterPro Entry Q9NSB4

    ProtoNet protein and cluster: Q9NSB4

    3 Blocks protein domains:
    IPB001664 Intermediate filament protein
    IPB002957 Type I keratin signature
    IPB003054 Type II keratin signature


    UniProtKB/Swiss-Prot: KRT82_HUMAN, Q9NSB4
    Similarity: Belongs to the intermediate filament family


    Find genes that share domains with KRT82           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005198structural molecule activity ----
    GO:0030280structural constituent of epidermis NAS10692104
         
    Find genes that share ontologies with KRT82           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for KRT82

    miRNA
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    4 qRT-PCR Assays for microRNAs that regulate KRT82:
    hsa-let-7g* hsa-let-7a-2* hsa-miR-486-3p hsa-miR-192*
    SwitchGear 3'UTR luciferase reporter plasmidKRT82 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: KRT82 (NM_033033)
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton5
    cytosol3
    mitochondrion2
    nucleus1
    peroxisome1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005882intermediate filament ----
    GO:0045095keratin filament IDA10692104

    Find genes that share ontologies with KRT82           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KRT82
    Interactions:

        Search GeneGlobe Interaction Network for KRT82

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for KRT82 (Q9NSB43 ENSP000002579744) via UniProtKB, MINT, STRING, and/or I2D (see all 17)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DLG3Q927963, ENSP000003634804I2D: score=2 STRING: ENSP00000363480
    DNPEPQ9ULA03, ENSP000002730754I2D: score=2 STRING: ENSP00000273075
    TWF2Q6IBS03, ENSP000003039084I2D: score=2 STRING: ENSP00000303908
    ATG12O948173, ENSP000002744594I2D: score=1 STRING: ENSP00000274459
    RAB24Q969Q53, ENSP000003043764I2D: score=2 STRING: ENSP00000304376
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with KRT82           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for KRT82



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for KRT82 gene: 
    NM_033033.3  

    Unigene Cluster for KRT82:

    Keratin 82
    Hs.134640  [show with all ESTs]
    Unigene Representative Sequence: NM_033033
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000257974(uc001sai.1)
    miRNA
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    4 qRT-PCR Assays for microRNAs that regulate KRT82:
    hsa-let-7g* hsa-let-7a-2* hsa-miR-486-3p hsa-miR-192*
    SwitchGear 3'UTR luciferase reporter plasmidKRT82 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat KRT82
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat KRT82
      QuantiFast Probe-based Assays in human, mouse, rat KRT82

    Additional mRNA sequence: AJ628419.1 

    1 DOTS entry:

    DT.75120903 

    2 AceView cDNA sequences:

    NM_033033 AJ628419 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    KRT82 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CACACTGCAA
    KRT82 Expression
    About this image


    KRT82 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Epithelial Cells
             Fetal Medulla Cells Hair Shaft
     
     Hair (Integumentary System)    fully expand to see all 3 entries
             Fetal Medulla Cells Hair Shaft
    KRT82 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    KRT82 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.134640
        Custom PCR Arrays for KRT82
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KRT82

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for KRT82 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Krt821 , 5 keratin 821, 5 86.05(n)1
    86.64(a)1
      15 (56.90 cM)5
    1145661  NM_053249.31  NP_444479.21 
     1015412295 


    ENSEMBL Gene Tree for KRT82 (if available)
    TreeFam Gene Tree for KRT82 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KRT82 gene
    KRT742  KRT772  KRT6B2  KRT832  KRT762  KRT32  KRT842  KRT862  
    KRT82  KRT812  KRT712  KRT72  KRT792  KRT722  KRT732  KRT6C2  
    KRT52  KRT6A2  KRT852  KRT22  KRT752  KRT12  KRT42  
    Selected SIMAP similar genes for KRT82 using alignment to 1 protein entry:     KRT82_HUMAN(see all similar genes):
    KRTHB2    KRT121P    KRT83    KRT84    KRT86    KRT7
    KRT85    KRT5    KRT81    KRT8    KRT4    KRT1
    KRT2    KRT6A    KRT6B    KRT6C    KRT71    KRT76

    Find genes that share paralogs with KRT82           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KRT82 (see all 436)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1476361121,2
    --52621564(+) GGCTCC/TCTAAA 1 -- ds50010--------
    rs20010371,2
    C,F,A,H--52621778(-) CAGGCC/ATCCTC 1 -- ds500113Minor allele frequency- A:0.30NA WA CSA EA 376
    rs787920191,2
    C,F--52621862(+) GTGTGA/TTTTGT 1 -- ds50011Minor allele frequency- T:0.06WA 118
    rs20010361,2
    C,F,A,H--52621893(-) CAAATT/GGCCTG 1 -- ds500111Minor allele frequency- G:0.29NA WA CSA EA 376
    rs111701111,2
    C--52621934(+) TATAAT/CAGTCT 1 -- ds50014Minor allele frequency- C:0.30NA EA 244
    rs791910151,2
    F--52622006(+) TCACAC/ATTTCC 1 -- ds50011Minor allele frequency- A:0.01NA 120
    rs733045921,2
    C,F--52622184(+) TCCTGA/GGCCAG 1 -- ut313Minor allele frequency- G:0.27WA CSA 122
    rs1168449441,2
    C,F--52622203(+) AGTCAG/TCTGGG 1 -- ut311Minor allele frequency- T:0.02NA 120
    rs1423150801,2
    --52622245(+) AAGCAA/CAAGGA 1 -- ut310--------
    rs1932749741,2
    --52622258(+) TAAAGG/TGTTGG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for KRT82 (52787715 - 52800176 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for KRT82:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832411CNV Loss17160897
    nsv832412CNV Loss17160897
    dgv200n27CNV Gain19166990
    dgv70e55CNV Gain17911159
    nsv832410CNV Gain17160897
    nsv516938CNV Gain+Loss19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 601078    OMIM disorders: --


    Find genes that share disorders with KRT82           About GenesLikeMe

    Genetic Association Database (GAD): KRT82

    Export disorders for KRT82 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KRT82 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with KRT82)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. New consensus nomenclature for mammalian keratins. (PubMed id 16831889)1, 3 Schweizer J....Wright M.W. (J. Cell Biol. 2006)
    2. Characterization of a 300 kbp region of human DNA containing the type II hair keratin. (PubMed id 10692104)1, 2 Rogers M.A.... Schweizer J. (J. Invest. Dermatol. 2000)
    3. The complement of native alpha-keratin polypeptides of hair-forming cells: a subset of eight polypeptides that differ from epithelial cytokeratins. (PubMed id 2431943)1, 3 Heid H.W....Franke W.W. ( research in biological diversity 1986)
    4. Charting the molecular network of the drug target Bcr-Abl. (PubMed id 19380743)1 Brehme M....Superti-Furga G. (Proc. Natl. Acad. Sci. U.S.A. 2009)
    5. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)1 Ewing R.M....Figeys D. (Mol. Syst. Biol. 2007)
    6. The finished DNA sequence of human chromosome 12. (PubMed id 16541075)2 Scherer S.E.... Gibbs R.A. (Nature 2006)
    7. Characterization of new members of the human type II keratin gene family and a general evaluation of the keratin gene domain on chromosome 12q13.13. (PubMed id 15737194)1 Rogers M.A....Schweizer J. (J. Invest. Dermatol. 2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 3888 HGNC: 6459 AceView: KRTHB2 Ensembl:ENSG00000161850 euGenes: HUgn3888
    ECgene: KRT82 H-InvDB: KRT82

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KRT82 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KRT82 gene:
    Search GeneIP for patents involving KRT82

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for KRT82  
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     Block miRNA regulation of human, mouse, rat KRT82 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing KRT82
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KRT82 Predesigned siRNA for gene silencing in human, mouse, rat KRT82
     QuantiFast Probe-based Assays in human, mouse, rat KRT82 QuantiTect SYBR Green Assays in human, mouse, rat KRT82
     Custom PCR Arrays for KRT82 Search Chromatin IP Primers for KRT82
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     Browse ESI BIO Cell Lines and PureStem Progenitors for KRT82
     Gene Synthesis
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     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KRT82
     SwitchGear 3'UTR luciferase reporter plasmids for KRT82
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     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KRT82
     Browse compounds at ApexBio
     Search Addgene for plasmids for KRT82
      Search eBioscience for proteins for KRT82
      Search eBioscience for elisas for KRT82
      eBioscience FlowRNA Probe Sets
     genOway: Develop your customized and physiologically relevant rodent model for KRT82
     antibodies-online antibodies for KRT82 (26 products)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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