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Aliases for KRT78 Gene

Aliases for KRT78 Gene

  • Keratin 78 2 3 5
  • Type-II Keratin Kb40 3 4
  • Keratin 78, Type II 2 3
  • Cytokeratin-78 3 4
  • Keratin-5b 3 4
  • CK-78 3 4
  • Kb40 3 4
  • K5B 3 4
  • K78 3 4
  • Keratin, Type II Cytoskeletal 78 3
  • Keratin-78 4

External Ids for KRT78 Gene

Previous GeneCards Identifiers for KRT78 Gene

  • GC12M051518
  • GC12M053232
  • GC12M050276

Summaries for KRT78 Gene

Entrez Gene Summary for KRT78 Gene

  • This gene is a member of the type II keratin gene family and encodes a protein with an intermediate filament domain. Keratins are the major structural proteins in epithelial cells, forming a cytoplasmic network of 10 to 12 nm wide intermediate filaments and creating a scaffold that gives cells the ability to withstand mechanical and non-mechanical stresses. The genes of the type II keratin family are located as a gene cluster at 12p13.13. Four pseudogenes of this gene family have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for KRT78 Gene

KRT78 (Keratin 78) is a Protein Coding gene. Among its related pathways are Developmental Biology. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is KRT84.

Gene Wiki entry for KRT78 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT78 Gene

Genomics for KRT78 Gene

Regulatory Elements for KRT78 Gene

Enhancers for KRT78 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F052891 0.5 FANTOM5 10.4 -42.2 -42158 0.3 ZNF585B CHD7 KRT18 MAP3K12 KRT78 KRT79 PFDN5 KRT4 KRT84 KRT8 KRT83 ZNF740
GH12F052585 0.7 Ensembl ENCODE 10.4 +263.0 262992 0.6 CTCF ZNF24 REST KRT1 KRT78 KRT84 KRT2 KRT72 KRT74 KRT73-AS1
GH12F052579 1.4 FANTOM5 Ensembl ENCODE 10.4 +267.6 267561 3.9 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZNF207 FOS DEK ZNF263 SP5 KRT72 KRT1 KRT71 KRT78 KRT79 KRT2 KRT84 KRT4 KRT6C KRT76
GH12F052964 1.4 FANTOM5 Ensembl ENCODE 10.2 -116.1 -116053 1.7 ESRRA ZNF687 DDX20 TEAD4 PTTG1 DPF2 ZBTB40 ZNF592 NR2F2 ZNF664 KRT78 KRT79 KRT84 KRT86 KRT71 KRT4 KRT87P PCBP2 AMHR2 KRT18
GH12F052894 1.3 FANTOM5 Ensembl ENCODE 10.1 -53.9 -53947 16.3 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC AAAS ZNF740 SP1 PFDN5 IGFBP6 LOC100652999 KRT18 ENSG00000257500 LOC105378250 MAP3K12
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KRT78 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRT78 Gene

Chromosome:
12
Start:
52,837,804 bp from pter
End:
52,849,092 bp from pter
Size:
11,289 bases
Orientation:
Minus strand

Genomic View for KRT78 Gene

Genes around KRT78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT78 Gene

Proteins for KRT78 Gene

  • Protein details for KRT78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1N4-K2C78_HUMAN
    Recommended name:
    Keratin, type II cytoskeletal 78
    Protein Accession:
    Q8N1N4
    Secondary Accessions:
    • A8K4D6
    • Q5HYM7
    • Q7RTT2

    Protein attributes for KRT78 Gene

    Size:
    520 amino acids
    Molecular mass:
    56866 Da
    Quaternary structure:
    • Heterotetramer of two type I and two type II keratins.
    Miscellaneous:
    • There are two types of cytoskeletal and microfibrillar keratin, I (acidic) and II (neutral to basic) (40-55 and 56-70 kDa, respectively).
    SequenceCaution:
    • Sequence=DAA00377.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for KRT78 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KRT78 Gene

Post-translational modifications for KRT78 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRT78 Gene

No data available for DME Specific Peptides for KRT78 Gene

Domains & Families for KRT78 Gene

Gene Families for KRT78 Gene

Suggested Antigen Peptide Sequences for KRT78 Gene

Graphical View of Domain Structure for InterPro Entry

Q8N1N4

UniProtKB/Swiss-Prot:

K2C78_HUMAN :
  • Belongs to the intermediate filament family.
Family:
  • Belongs to the intermediate filament family.
genes like me logo Genes that share domains with KRT78: view

Function for KRT78 Gene

Gene Ontology (GO) - Molecular Function for KRT78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005198 structural molecule activity IEA --
genes like me logo Genes that share ontologies with KRT78: view
genes like me logo Genes that share phenotypes with KRT78: view

Animal Model Products

miRNA for KRT78 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KRT78 Gene

Localization for KRT78 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRT78 Gene COMPARTMENTS Subcellular localization image for KRT78 gene
Compartment Confidence
extracellular 5
cytoskeleton 2
cytosol 2
mitochondrion 2
nucleus 2

Gene Ontology (GO) - Cellular Components for KRT78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 22664934
GO:0005882 intermediate filament IEA --
GO:0045095 keratin filament IEA --
GO:0070062 extracellular exosome IDA 19199708
genes like me logo Genes that share ontologies with KRT78: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRT78 Gene

Pathways & Interactions for KRT78 Gene

SuperPathways for KRT78 Gene

SuperPathway Contained pathways
1 Developmental Biology
genes like me logo Genes that share pathways with KRT78: view

Pathways by source for KRT78 Gene

1 Reactome pathway for KRT78 Gene

Gene Ontology (GO) - Biological Process for KRT78 Gene

None

No data available for SIGNOR curated interactions for KRT78 Gene

Transcripts for KRT78 Gene

Unigene Clusters for KRT78 Gene

Keratin 78:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT78 Gene

No ASD Table

Relevant External Links for KRT78 Gene

GeneLoc Exon Structure for
KRT78
ECgene alternative splicing isoforms for
KRT78

Expression for KRT78 Gene

mRNA expression in normal human tissues for KRT78 Gene

mRNA differential expression in normal tissues according to GTEx for KRT78 Gene

This gene is overexpressed in Esophagus - Mucosa (x29.3), Cervix - Ectocervix (x7.0), Vagina (x6.0), and Skin - Sun Exposed (Lower leg) (x4.2).

Protein differential expression in normal tissues from HIPED for KRT78 Gene

This gene is overexpressed in Saliva (42.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for KRT78 Gene



Protein tissue co-expression partners for KRT78 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of KRT78 Gene:

KRT78

SOURCE GeneReport for Unigene cluster for KRT78 Gene:

Hs.665267

mRNA Expression by UniProt/SwissProt for KRT78 Gene:

Q8N1N4-K2C78_HUMAN
Tissue specificity: Expressed in tongue, but not in skin or in any other tissues or organs examined.
genes like me logo Genes that share expression patterns with KRT78: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for KRT78 Gene

Orthologs for KRT78 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KRT78 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KRT78 34 35
  • 98.72 (n)
cow
(Bos Taurus)
Mammalia KRT78 34 35
  • 84.24 (n)
dog
(Canis familiaris)
Mammalia KRT78 34 35
  • 82.2 (n)
rat
(Rattus norvegicus)
Mammalia Krt78 34
  • 76.98 (n)
mouse
(Mus musculus)
Mammalia Krt78 34 16 35
  • 76.65 (n)
oppossum
(Monodelphis domestica)
Mammalia KRT78 35
  • 51 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KRT78 35
  • 39 (a)
OneToOne
chicken
(Gallus gallus)
Aves KRT78 35
  • 41 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KRT78 35
  • 38 (a)
OneToOne
Species where no ortholog for KRT78 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRT78 Gene

ENSEMBL:
Gene Tree for KRT78 (if available)
TreeFam:
Gene Tree for KRT78 (if available)

Paralogs for KRT78 Gene

Paralogs for KRT78 Gene

genes like me logo Genes that share paralogs with KRT78: view

Variants for KRT78 Gene

Sequence variations from dbSNP and Humsavar for KRT78 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10876356 -- 52,843,306(+) GGTTG(C/T)AGTGA intron-variant
rs10876357 -- 52,843,456(+) AGGCC(A/G)AGGCG intron-variant
rs10876358 -- 52,843,653(+) CACTG(A/T)ACTCC intron-variant
rs10876359 -- 52,845,085(+) ATCTC(A/G)GCTCA intron-variant
rs10876360 -- 52,846,241(+) CAGAG(C/T)CTCCA intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for KRT78 Gene

Variant ID Type Subtype PubMed ID
nsv1048816 CNV gain 25217958
nsv711 CNV insertion 18451855
nsv832416 CNV loss 17160897

Variation tolerance for KRT78 Gene

Residual Variation Intolerance Score: 97.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.64; 93.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KRT78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRT78 Gene

Disorders for KRT78 Gene

Relevant External Links for KRT78

Genetic Association Database (GAD)
KRT78
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT78

No disorders were found for KRT78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT78 Gene

Publications for KRT78 Gene

  1. New consensus nomenclature for mammalian keratins. (PMID: 16831889) Schweizer J. … Wright M.W. (J. Cell Biol. 2006) 2 3 64
  2. Characterization of new members of the human type II keratin gene family and a general evaluation of the keratin gene domain on chromosome 12q13.13. (PMID: 15737194) Rogers M.A. … Schweizer J. (J. Invest. Dermatol. 2005) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Genes for intermediate filament proteins and the draft sequence of the human genome: novel keratin genes and a surprisingly high number of pseudogenes related to keratin genes 8 and 18. (PMID: 11683385) Hesse M. … Weber K. (J. Cell Sci. 2001) 3 4 64
  5. Localisation of keratin K78 in the basal layer and first suprabasal layers of stratified epithelia completes expression catalogue of type II keratins and provides new insights into sequential keratin expression. (PMID: 26340985) Langbein L. … Schweizer J. (Cell Tissue Res. 2016) 3 64

Products for KRT78 Gene

Sources for KRT78 Gene

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