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KRT71 Gene

protein-coding GIFtS: 47

GC12M051224

keratin 71
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
CK-71 ^³
Cytokeratin-71 ^³
K6IRS1 ^¹, ², ³, ⁵
K71 ^³
KB34 ^³
KRT6IRS ^¹, ²
KRT6IRS1 ^¹, ², ³, ⁵
Keratin-71 ^³
MGC119390 ^²
MGC119391 ^²
hK6irs ^³
hK6irs1 ^³

Descriptions
Keratin 6 irs ^², ³
Type II inner root sheath-specific keratin-K6irs1 ^³
Type II keratin-34 ^³
keratin 71 ^²

External Ids
HGNC: 28927¹
Entrez Gene: 112802²
UniProtKB: Q3SY84³
Ensembl: ENSG00000139648⁷

Search outside databases for aliases for KRT71 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for KRT71:

K6IRS1 belongs to a family of type II keratins that are specifically expressed in the inner root

sheath of hair follicles.[supplied by OMIM]

UniProtKB/Swiss-Prot: K2C71_HUMAN, Q3SY84

Function: Plays a central role in hair formation. Essential component of keratin intermediate

filaments in the inner root sheath (IRS) of the hair follicle (Probable)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the KRT71 gene

Entrez Gene cytogenetic band: 12q13.13 Ensembl cytogenetic band: 12q13.13 HGNC cytogenetic band: 12q13.13

KRT71 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M051224: (about GC identifiers)

Start:	51,223,960 bp from pter
End:	51,233,198 bp from pter
Size:	9,239 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000012.10 NT_029419.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: K2C71_HUMAN, Q3SY84 (See protein sequence)

Recommended Name: Keratin, type II cytoskeletal 71

Size: 523 amino acids; 57249 Da

Subunit: Heterodimer of a type I and a type II keratin. Associates with KRT16 and/or KRT17 (By

similarity)

Developmental stage: In all 3 IRS layers, expression begins simultaneously in adjacent cells of the

lowermost bulb above the germinative cell pool and terminated higher up in the follicle with the

asynchronous terminal differentiation of each cell layer (at protein level)

Miscellaneous: There are two types of cytoskeletal and microfibrillar keratin, I (acidic) and II

(neutral to basic) (40-55 and 56-70 kDa, respectively)

Secondary accessions: B3KVC1 Q3SY85 Q96DU2

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_258259.1

ENSEMBL proteins:

ENSP00000267119

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (KRT71)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0045095	keratin filament	IEA	--

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Antibodies for KRT71:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for KRT71

Assays for KRT71:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q3SY84

ProtoNet protein and cluster: Q3SY84

3 Blocks protein families:

IPB001664 Intermediate filament protein

IPB003054 Type II keratin signature

IPB011072 Protein kinase PKN/PRK1

UniProtKB/Swiss-Prot: K2C71_HUMAN, Q3SY84

Similarity: Belongs to the intermediate filament family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (KRT71)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_033448

Applied Biosystems Silencer® siRNAs for KRT71

Sigma-Aldrich siRNA for KRT71

Sigma-Aldrich shRNA for KRT71

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for KRT71
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_033448
Myc/DDK tagged cDNA clone in CMV expression vector: NM_033448
untagged cDNA clone in CMV expression vector: NM_033448

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_033448

UniProtKB/Swiss-Prot: K2C71_HUMAN, Q3SY84

Function: Plays a central role in hair formation. Essential component of keratin intermediate

filaments in the inner root sheath (IRS) of the hair follicle (Probable)

5 MGI mutant phenotypes (inferred from 18 alleles) (MGI details for Krt71):

adipose tissue

endocrine/exocrine gland

no phenotypic analysis

skin/coat/nails

touch/vibrissae

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005198	structural molecule activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0031069	hair follicle morphogenesis	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for KRT71

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (KRT71)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_033448

Sigma-Aldrich siRNA for KRT71

Sigma-Aldrich shRNA for KRT71

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_033448

REFSEQ mRNAs for KRT71 gene:

NM_033448.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_033448

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_033448
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_033448
                                 untagged cDNA clone in CMV expression vector: NM_033448

Additional cDNA sequence:

AJ308599.1 AJ308600.1 AJ308601.1 AK122795.1 BC103917.1 BC103918.1

3 DOTS entries:

DT.95262692 DT.409205 DT.121118073

5 AceView cDNA sequences:

AJ308600 AJ308599 AJ308601 NM_033448 AK122795

highest scoring ESTs for KRT71:

AJ308599 AK122795 AI190071 AJ308600 AJ308601 NM_033448 AA009967 AA009968 AA339939 AA455358

Unigene Cluster for KRT71:

Keratin 71

Hs.660007 [show with all ESTs]

Unigene Representative Sequence: AK122795

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000267119

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

KRT71 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for KRT71

¹ / ² / ³

3 probe-sets matching KRT71 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
51833_at²^{, 3}	U95-B	1	1.00	1.00	1.00	1.00	AI190071	0.40	0.67	0.55	1
231461_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AI190071	0.40	0.67	0.55	1
231461_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GGGACGACCT

SOURCE GeneReport for Unigene cluster: Hs.660007
UniProtKB/Swiss-Prot: K2C71_HUMAN, Q3SY84
Tissue specificity: Highly expressed in hair follicles from scalp. Specifically expressed in the
inner root sheath (IRS) of the hair follicle. Present in the all 3 IRS layers: the cuticle, the
Henle and the Huxley layers. Also detected in the pseudopods of specialized Huxley cells, termed
Fluegelzellen, along the area of differentiated Henle cells (at protein level)

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for KRT71 gene from 2 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
cow (Bos taurus)	KRT71¹	--	keratin 71	91.91(n) 94.07(a)	532644 NM_001075970.1 NP_001069438.1
mouse (Mus musculus)	Krt71^{1, 5}	15 (63.20 cM)⁵	keratin 71^{1, 5}	88.06(n)¹ 91.76(a)¹	56735¹ NM_019956.1¹ NP_064340.1¹ AA589543⁵ AB033744⁵ (see all 15)

About this table Species with no ortholog for KRT71

ENSEMBL Gene Tree for KRT71

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for KRT71 gene

KRT74² KRT80² KRT78² KRT73² KRT72²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/88 NCBI SNPs in KRT71 are shown (see all 88 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 104)

AB	SNP ID	Valid	Chr 12 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs665470^1,2	A,C,F,H,O	51232765(+)	`GATCTC/TGGGGT`	1	E/K	mis¹ ese³		14	MN EA NA EU WA	1308
	rs2292506^1,2	C,F,H,O	51224587(+)	`TCTACC/TGACTG`	1	R/Q	mis¹ ese³		13	EA EU WA	2758
	rs2292505^1,2	A,C,F,H	51224218(+)	`CTAGGC/TCCCAG`	1	--	ut3¹ ese³		7	EA EU WA NA	2082
	rs4761802^1,2	A,C,F,H	51223554(+)	`TGAGCG/AGTGAG`	1	--	ng5¹		8	EU EA WA	824
	rs10783518^1,2	A,C,F,H	51224764(+)	`CATAGC/ACACTG`	1	G/V	mis¹ ese³		8	EU EA WA	820
	rs7304360^1,2	A,C,F,H	51234838(+)	`GCTGGA/TGGGGC`	1	--	ng3¹		4	EU EA WA	380
	rs588887^1,2	A,C,F,H	51233792(-)	`GGGGGT/AGAAGT`	1	--	ng3¹ tfbs³ trp³		6	MN EA EU WA	1848
	rs4761933^1,2	A,C,F,H	51235142(+)	`ggaatC/Tgtggg`	1	--	ng3¹		16	EU EA WA NA	1472
	rs628819^1,2	A,C,F,H	51233157(+)	`GATGCA/GGGAGG`	1	--	ut5¹ trp³		5	MN EU EA WA	596
	rs627500^1,2	A,C,F,H	51233443(+)	`TGCCCT/CAGGCC`	1	--	ng3¹		5	MN EU EA WA	596

About this table

HapMap Linkage Disequilibrium images for KRT71 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 608245

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

7 PubMed articles for KRT71 gene:

K6irs1, K6irs2, K6irs3, and K6irs4 represent the inner-root-sheath-specific type II epithelial keratins of the human hair follicle. (PubMed id 12648212)^{1, 2, 3, 4} Langbein L....Schweizer J. (2003)
A novel epithelial keratin, hK6irs1, is expressed differentially in all layers of the inner root sheath, including specialized huxley cells (Flugelzellen) of the human hair follicle. (PubMed id 11982755)^{2, 3, 4} Langbein L....Schweizer J. (2002)
New consensus nomenclature for mammalian keratins. (PubMed id 16831889)^{2, 3} Schweizer J....Wright M.W. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
K25 (K25irs1), K26 (K25irs2), K27 (K25irs3), and K28 (K25irs4) represent the type I inner root sheath keratins of the human hair follicle. (PubMed id 16874310)⁴ Langbein L.... Schweizer J. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 112802	HGNC: 28927	AceView: KRT6IRS	Ensembl:ENSG00000139648	euGenes: HUgn112802
ECgene: KRT71	H-InvDB: KRT71

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for KRT71
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for KRT71:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for KRT71-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for KRT71		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for KRT71		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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Search Novus for antibodies for KRT71

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KRT71 Gene

protein-coding GIFtS: 47

Aliases &
Descriptions
for KRT71

Summaries
for KRT71

Genomic Location
for KRT71

Proteins
for KRT71

Protein Domains/
Families
for KRT71

Gene Function
for KRT71

Pathways & Interactions
for KRT71

Drugs & Compounds
for KRT71

Transcripts
for KRT71

Expression
for KRT71

Orthologs
for KRT71

Paralogs
for KRT71

SNPs/Variants
for KRT71

Disorders & Mutations
for KRT71

Medical News
for KRT71

Publications
for KRT71

Search for KRT71

Genome Databases showing KRT71

Other Databases showing KRT71

Specialized Databases showing KRT71

Licensable Technologies
for KRT71

Services
for KRT71

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

KRT71 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor KRT71

Summariesfor KRT71

Genomic Locationfor KRT71

Proteinsfor KRT71

Protein Domains/Familiesfor KRT71

Gene Functionfor KRT71

Pathways & Interactionsfor KRT71

Drugs & Compoundsfor KRT71

Transcriptsfor KRT71

Expression for KRT71

Orthologsfor KRT71

Paralogsfor KRT71

SNPs/Variantsfor KRT71

Disorders & Mutationsfor KRT71

Medical Newsfor KRT71

Publicationsfor KRT71

Search for KRT71

Genome Databases showing KRT71

Other Databases showing KRT71

Specialized Databases showing KRT71

Licensable Technologiesfor KRT71

Servicesfor KRT71

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for KRT71

Summaries
for KRT71

Genomic Location
for KRT71

Proteins
for KRT71

Protein Domains/
Families
for KRT71

Gene Function
for KRT71

Pathways & Interactions
for KRT71

Drugs & Compounds
for KRT71

Transcripts
for KRT71

Expression
for KRT71

Orthologs
for KRT71

Paralogs
for KRT71

SNPs/Variants
for KRT71

Disorders & Mutations
for KRT71

Medical News
for KRT71

Publications
for KRT71

Licensable Technologies
for KRT71

Services
for KRT71