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Aliases for KRT42P Gene

Aliases for KRT42P Gene

  • Keratin 42 Pseudogene 2 3

External Ids for KRT42P Gene

Summaries for KRT42P Gene

GeneCards Summary for KRT42P Gene

KRT42P (Keratin 42 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT42P Gene

Genomics for KRT42P Gene

Genomic Location for KRT42P Gene

Start:
41,626,327 bp from pter
End:
41,640,199 bp from pter
Size:
13,873 bases
Orientation:
Minus strand

Genomic View for KRT42P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRT42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT42P Gene

No data available for Regulatory Elements for KRT42P Gene

Proteins for KRT42P Gene

Post-translational modifications for KRT42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT42P Gene

Domains for KRT42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT42P Gene

Function for KRT42P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRT42P Gene

Localization for KRT42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT42P Gene

Pathways for KRT42P Gene

SuperPathways for KRT42P Gene

No Data Available

Interacting Proteins for KRT42P Gene

Gene Ontology (GO) - Biological Process for KRT42P Gene

None

No data available for Pathways by source for KRT42P Gene

Transcripts for KRT42P Gene

mRNA/cDNA for KRT42P Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT42P Gene

Keratin 42 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT42P Gene

No ASD Table

Relevant External Links for KRT42P Gene

GeneLoc Exon Structure for
KRT42P
ECgene alternative splicing isoforms for
KRT42P

Expression for KRT42P Gene

mRNA expression in normal human tissues for KRT42P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KRT42P Gene

This gene is overexpressed in Pituitary (11.4), Skin - Not Sun Exposed (Suprapubic) (11.0), Skin - Sun Exposed (Lower leg) (6.7), and Testis (4.8).

SOURCE GeneReport for Unigene cluster for KRT42P Gene Hs.725790

genes like me logo Genes that share expressions with KRT42P: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for KRT42P Gene

Orthologs for KRT42P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for KRT42P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Krt42 16
Species with no ortholog for KRT42P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRT42P Gene

ENSEMBL:
Gene Tree for KRT42P (if available)
TreeFam:
Gene Tree for KRT42P (if available)

Paralogs for KRT42P Gene

No data available for Paralogs for KRT42P Gene

Variants for KRT42P Gene

Sequence variations from dbSNP and Humsavar for KRT42P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs4076033 -- 41,632,132(-) ATCTT(C/T)GGGAT intron-variant
rs4426396 -- 41,634,355(+) TCAGC(A/G)GTCTG intron-variant
rs4494601 -- 41,639,398(+) CTGCA(A/G)TGCTC nc-transcript-variant
rs4796682 -- 41,627,843(+) TGAAG(C/T)GGGCC intron-variant
rs6416918 -- 41,639,516(+) TCAGA(C/T)TGGGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for KRT42P Gene

Variant ID Type Subtype PubMed ID
dgv961e1 CNV Complex 17122850
dgv962e1 CNV Complex 17122850
nsv827992 CNV Gain 20364138
esv34903 CNV Gain 17911159
esv1007034 CNV Deletion 20482838
esv1131537 CNV Deletion 17803354
esv2715938 CNV Deletion 23290073
nsv819224 CNV Insertion 19587683
nsv9560 CNV Loss 18304495
nsv2055 CNV Insertion 18451855

Relevant External Links for KRT42P Gene

HapMap Linkage Disequilibrium report
KRT42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRT42P Gene

Disorders for KRT42P Gene

Relevant External Links for KRT42P

Genetic Association Database (GAD)
KRT42P
genes like me logo Genes that share disorders with KRT42P: view

No data available for UniProtKB/Swiss-Prot for KRT42P Gene

Publications for KRT42P Gene

  1. New consensus nomenclature for mammalian keratins. (PMID: 16831889) Schweizer J. … Wright M.W. (J. Cell Biol. 2006) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for KRT42P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRT42P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for KRT42P
    • Block miRNA regulation of KRT42P using miScript Target Protectors

    Sources for KRT42P Gene

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