Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KRT42P Gene

Aliases for KRT42P Gene

  • Keratin 42 Pseudogene 2 3 5

External Ids for KRT42P Gene

Previous GeneCards Identifiers for KRT42P Gene

  • GC17M037036
  • GC17M039784
  • GC17M035545
  • GC17M039785
  • GC17M039789
  • GC17M039791
  • GC17M039796

Summaries for KRT42P Gene

GeneCards Summary for KRT42P Gene

KRT42P (Keratin 42 Pseudogene) is a Pseudogene.

Additional gene information for KRT42P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT42P Gene

Genomics for KRT42P Gene

GeneHancer (GH) Regulatory Elements for KRT42P Gene

Promoters and enhancers for KRT42P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I041649 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.5 -14.4 -14447 9.8 HDGF ARNT ZNF133 NEUROD1 YBX1 BRCA1 TCF12 GLIS2 ZNF143 ZNF207 ENSG00000267758 JUP HSD17B1 DHX58 GHDC ENSG00000259623 KRT14 CNP PSMC3IP RETREG3
GH17I041634 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +4.9 4867 1.6 BCOR ATF1 ZNF223 FEZF1 ATF2 NR2F2 IKZF1 CREB1 RCOR1 ATF7 KRT14 KRT42P KRT17
GH17I041620 Promoter/Enhancer 1.6 EPDnew FANTOM5 ENCODE 0.4 +16.0 16001 6.5 PKNOX1 NFIB KLF17 BRCA1 ZNF335 GLIS2 ZNF366 RCOR1 KLF7 EGR2 KRT17 GC17M041622 GC17M041625 KRT9 KRT15 KRT14 KRT19 KRT40 ENSG00000234477 KRT37
GH17I041645 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.7 -5686 1.3 HDAC1 HDGF ATF1 NFRKB ARID2 ATF7 CREM SMARCC1 ZNF592 MAFF EIF1 C17orf113 DHX58 NKIRAS2 KRT42P ENSG00000278954
GH17I041647 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -8.3 -8297 2.2 HDGF ARID4B SIN3A GLI4 ZNF121 GLIS2 ARID2 ZNF143 NCOA1 REST RETREG3 DHX58 ENSG00000236194 HAP1 KRT42P ENSG00000278954
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KRT42P on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT42P Gene

Genomic Locations for KRT42P Gene
chr17:41,626,327-41,640,199
(GRCh38/hg38)
Size:
13,873 bases
Orientation:
Minus strand
chr17:39,782,579-39,796,451
(GRCh37/hg19)

Genomic View for KRT42P Gene

Genes around KRT42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT42P Gene

Proteins for KRT42P Gene

Post-translational modifications for KRT42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT42P Gene

Domains & Families for KRT42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT42P Gene

Function for KRT42P Gene

Phenotypes for KRT42P Gene

GenomeRNAi human phenotypes for KRT42P:
genes like me logo Genes that share phenotypes with KRT42P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT42P Gene

Localization for KRT42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT42P Gene

Pathways & Interactions for KRT42P Gene

SuperPathways for KRT42P Gene

No Data Available

Interacting Proteins for KRT42P Gene

Gene Ontology (GO) - Biological Process for KRT42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT42P Gene

Drugs & Compounds for KRT42P Gene

No Compound Related Data Available

Transcripts for KRT42P Gene

mRNA/cDNA for KRT42P Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT42P Gene

Keratin 42 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT42P Gene

No ASD Table

Relevant External Links for KRT42P Gene

GeneLoc Exon Structure for
KRT42P
ECgene alternative splicing isoforms for
KRT42P

Expression for KRT42P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT42P Gene

mRNA differential expression in normal tissues according to GTEx for KRT42P Gene

This gene is overexpressed in Pituitary (x11.4), Skin - Not Sun Exposed (Suprapubic) (x11.0), Skin - Sun Exposed (Lower leg) (x6.7), and Testis (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of KRT42P Gene:

KRT42P

SOURCE GeneReport for Unigene cluster for KRT42P Gene:

Hs.725790
genes like me logo Genes that share expression patterns with KRT42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT42P Gene

Orthologs for KRT42P Gene

Evolution for KRT42P Gene

ENSEMBL:
Gene Tree for KRT42P (if available)
TreeFam:
Gene Tree for KRT42P (if available)

No data available for Orthologs for KRT42P Gene

Paralogs for KRT42P Gene

No data available for Paralogs for KRT42P Gene

Variants for KRT42P Gene

Sequence variations from dbSNP and Humsavar for KRT42P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000283762 -- 41,625,948(-) C/T downstream_transcript_variant
rs1000486953 -- 41,636,748(-) A/C intron_variant
rs1000753720 -- 41,635,759(-) G/A intron_variant
rs1000814903 -- 41,636,972(-) C/T intron_variant
rs1000891225 -- 41,629,534(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KRT42P Gene

Variant ID Type Subtype PubMed ID
esv1007034 CNV deletion 20482838
esv1131537 CNV deletion 17803354
esv2715938 CNV deletion 23290073
esv2758690 CNV gain+loss 17122850
esv34903 CNV gain 17911159
nsv1116217 CNV deletion 24896259
nsv1140178 CNV deletion 24896259
nsv1142900 CNV tandem duplication 24896259
nsv1146669 OTHER inversion 26484159
nsv2055 CNV insertion 18451855
nsv819224 CNV insertion 19587683
nsv827992 CNV gain 20364138
nsv9560 CNV loss 18304495
nsv962326 CNV duplication 23825009

Additional Variant Information for KRT42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT42P Gene

Disorders for KRT42P Gene

Additional Disease Information for KRT42P

No disorders were found for KRT42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT42P Gene

Publications for KRT42P Gene

  1. New consensus nomenclature for mammalian keratins. (PMID: 16831889) Schweizer J … Wright MW (The Journal of cell biology 2006) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for KRT42P Gene

Sources for KRT42P Gene

Content
Loading form....