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KRT37 Gene

protein-coding   GIFtS: 42
GCID: GC17M039581

Keratin 37

(Previous names: keratin, hair, acidic, 7)
(Previous symbol: KRTHA7)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Keratin 371 2     Keratin, Type I Cuticular Ha72
KRTHA71 2 3 5     keratin-372
Keratin, Hair, Acidic, 71 2     HHA73
Hair Keratin, Type I Ha72 3     HKA73
K372 3     Keratin-373
HA72 5     

External Ids:    HGNC: 64551   Entrez Gene: 86882   Ensembl: ENSG000001084177   OMIM: 6045415   UniProtKB: O760143   

Export aliases for KRT37 gene to outside databases

Previous GC identifers: GC17M036831 GC17M035340


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for KRT37 Gene:
The protein encoded by this gene is a member of the keratin gene family. As a type I hair keratin, it is an acidic
protein which heterodimerizes with type II keratins to form hair and nails. The type I hair keratins are
clustered in a region of chromosome 17q12-q21 and have the same direction of transcription. (provided by RefSeq,
Jul 2008)

GeneCards Summary for KRT37 Gene:
KRT37 (keratin 37) is a protein-coding gene. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is KRT34.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the KRT37 gene promoter:
         FOXF2   FOXO4   Bach2   c-Myb   AP-4   Pax-4a   Evi-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKRT37 promoter sequence
   Search Chromatin IP Primers for KRT37

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KRT37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21.2   Ensembl cytogenetic band:  17q21.2   HGNC cytogenetic band: 17q21.2

KRT37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KRT37 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M039581:  view genomic region     (about GC identifiers)

Start:
39,576,809 bp from pter      End:
39,580,822 bp from pter
Size:
4,014 bases      Orientation:
minus strand

1 alternative location:
Chr17+,NW_003315953 8,366-12,379     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: KRT37_HUMAN, O76014 (See protein sequence)
Recommended Name: Keratin, type I cuticular Ha7  
Size: 449 amino acids; 49747 Da
Miscellaneous: There are two types of hair/microfibrillar keratin, I (acidic) and II (neutral to basic)

Explore the universe of human proteins at neXtProt for KRT37: NX_O76014

Explore proteomics data for KRT37 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See KRT37 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_003761.3  
    ENSEMBL proteins: 
     ENSP00000225550  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    IFF1: Intermediate filaments type I, keratins (acidic)

    3 InterPro protein domains:
     IPR018039 Intermediate_filament_CS
     IPR001664 IF
     IPR002957 Keratin_I

    Graphical View of Domain Structure for InterPro Entry O76014

    ProtoNet protein and cluster: O76014

    2 Blocks protein domains:
    IPB001664 Intermediate filament protein
    IPB002957 Type I keratin signature


    UniProtKB/Swiss-Prot: KRT37_HUMAN, O76014
    Similarity: Belongs to the intermediate filament family


    Find genes that share domains with KRT37           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005198structural molecule activity IEA--
         
    Find genes that share ontologies with KRT37           About GenesLikeMe


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton3
    cytosol3
    golgi apparatus2
    nucleus2
    extracellular1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005882intermediate filament IEA--

    Find genes that share ontologies with KRT37           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KRT37
    Interactions:

        Search GeneGlobe Interaction Network for KRT37

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for KRT37 (O760143 ENSP000002255504) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    YWHAGP619813, ENSP000003063304I2D: score=1 STRING: ENSP00000306330
    ELF3P785453, ENSP000003526734I2D: score=1 STRING: ENSP00000352673
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for KRT37



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for KRT37 gene: 
    NM_003770.4  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000225550(uc002hwp.1)
    miRNA
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    11 AceView cDNA sequences:

    NM_003770 AJ786655 BF756993 BQ320456 BF336916 BF760155 BF759685 BQ320632 
    BF757134 BF083546 BF758777 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    KRT37 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAAGCAATTA
    KRT37 Expression
    About this image

    KRT37 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    KRT37 Protein Expression
        Custom PCR Arrays for KRT37
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KRT37

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for KRT37 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia --
    Uncharacterized protein
    73(a)
    1 → many
    9(21321398-21325239)
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    Keratin aHA1; Uncharacterized protein
    44(a)
    39(a)
    many ↔ many
    many ↔ many
    6(70606275-70614367)
    6(70591466-70598937)
    zebrafish
    (Danio rerio)
    Actinopterygii wu:fb17f056
    zgc:920616
    (see all 14)
    zgc:92061
    (see all 14)
    38(a)
    37(a)
    (see all 14)
    many ↔ many
    many ↔ many
    (see all 14)
    22(11885419-11889710) ENSDARG00000095147
    22(11866190-11869256) ENSDARG00000000212


    ENSEMBL Gene Tree for KRT37 (if available)
    TreeFam Gene Tree for KRT37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KRT37 gene
    KRT342  KRT172  KRT162  KRT312  KRT252  KRT392  KRT402  KRT202  
    KRT272  KRT322  KRT382  KRT362  KRT192  KRT282  KRT142  KRT132  
    KRT262  KRT102  KRT122  KRT352  KRT152  KRT242  KRT92  KRT33B2  
    KRT33A2  
    Selected SIMAP similar genes for KRT37 using alignment to 1 protein entry:     KRT37_HUMAN(see all similar genes):
    KRTHA7    KRT38    KRT33B    KRT34    KRT31    KRT33A
    JUP    K14    KRT32    KRT15    KRT19    KRT20
    KRT35    KRT13    KRT14    KRT16    keratin    KRT17

    Find genes that share paralogs with KRT37           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for KRT37
    PGOHUM00000237075


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KRT37 (see all 278)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1175059291,2
    C,F--35340391(-) AATGCA/GGGGAA 1 -- ut311Minor allele frequency- G:0.03EA 120
    rs754455451,2
    C--39576471(+) TTGACG/AATATT 2 -- ds50014Minor allele frequency- A:0.21NA WA EA 360
    rs1405426471,2
    C,F--39577151(+) GCTCCA/GTGGCC 4 H syn12Minor allele frequency- G:0.00NA EU 5857
    rs1474770381,2
    C,F--39577172(+) CCACCG/AGTGAC 4 /T syn11Minor allele frequency- A:0.00NA 4552
    rs177370191,2,,4
    C,F,H--39577180(+) GACAGG/AGCCAC 4 /P /S mis122Minor allele frequency- A:0.04NA NS EA EU 7953
    rs1445735701,2
    C,F--39577186(+) GCCACA/CGCTTG 4 G C mis11Minor allele frequency- C:0.00NA 4552
    rs1385293501,2
    C,F--39577188(+) CACAGC/ATTGGA 4 /S /I mis12Minor allele frequency- A:0.00NA EU 5873
    rs80718141,2,,4
    C,F,H--39577215(+) CAGGCG/ATGGAA 4 /T /M mis1 ese323Minor allele frequency- A:0.07NA NS EA WA EU 8423
    rs353719721,2,,4
    C,F--39577218(+) GCGTGG/AAACAG 4 /S /F mis16Minor allele frequency- A:0.03NA CSA WA 4756
    rs1399438251,2
    C--39577266(+) TACATA/TAAAAA 2 -- int10--------

    HapMap Linkage Disequilibrium report for KRT37 (39576809 - 39580822 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for KRT37:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2715932CNV Deletion23290073
    nsv483014CNV Loss15286789
    dgv961e1CNV Complex17122850

    Human Gene Mutation Database (HGMD): KRT37
    Site Specific Mutation Identification with PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for KRT37

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 604541    OMIM disorders: --


    Find genes that share disorders with KRT37           About GenesLikeMe


    Export disorders for KRT37 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KRT37 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with KRT37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of a 190-kilobase pair domain of human type I hair keratin genes. (PubMed id 9756910)1, 2, 3 Rogers M.A.... Schweizer J. (J. Biol. Chem. 1998)
    2. New consensus nomenclature for mammalian keratins. (PubMed id 16831889)1, 3 Schweizer J....Wright M.W. (J. Cell Biol. 2006)
    3. Charting the molecular network of the drug target Bcr-Abl. (PubMed id 19380743)1 Brehme M....Superti-Furga G. (Proc. Natl. Acad. Sci. U.S.A. 2009)
    4. The human type I keratin gene family: characterization of new hair follicle specific members and evaluation of the chromosome 17q21.2 gene domain. (PubMed id 15617563)1 Rogers M.A.... Schweizer J. (Differentiation 2004)
    5. The catalog of human hair keratins. I. Expression of the nine type I members in the hair follicle. (PubMed id 10391933)1 Langbein L....Schweizer J. (J. Biol. Chem. 1999)
    6. Human hair keratins. (PubMed id 7686952)1 Yu J....Bertolino A.P. (J. Invest. Dermatol. 1993)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 8688 HGNC: 6455 AceView: KRTHA7 Ensembl:ENSG00000108417 euGenes: HUgn8688
    ECgene: KRT37 H-InvDB: KRT37

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KRT37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KRT37 gene:
    Search GeneIP for patents involving KRT37

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Custom PCR Arrays for KRT37 Search Chromatin IP Primers for KRT37
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

     Novus Tissue Slides
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     genOway: Develop your customized and physiologically relevant rodent model for KRT37
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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