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KRT36 Gene

protein-coding   GIFtS: 49
GCID: GC17M039642

Keratin 36

(Previous names: keratin, hair, acidic, 6)
(Previous symbol: KRTHA6)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Keratin 361 2     hHa62
KRTHA61 2 3 5     Keratin, Type I Cuticular Ha62
Keratin, Hair, Acidic, 61 2     keratin-362
Hair Keratin, Type I Ha62 3     HHA63
K362 3     HKA63
HA62 5     Keratin-363

External Ids:    HGNC: 64541   Entrez Gene: 86892   Ensembl: ENSG000001263377   OMIM: 6045405   UniProtKB: O760133   

Export aliases for KRT36 gene to outside databases

Previous GC identifers: GC17M036896 GC17M035406


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for KRT36 Gene:
The protein encoded by this gene is a member of the keratin gene family. This type I hair keratin is an acidic
protein which heterodimerizes with type II keratins to form hair and nails. The type I hair keratins are
clustered in a region of chromosome 17q12-q21 and have the same direction of transcription. (provided by RefSeq,
Jul 2008)

GeneCards Summary for KRT36 Gene:
KRT36 (keratin 36) is a protein-coding gene. GO annotations related to this gene include structural constituent of epidermis. An important paralog of this gene is KRT34.

Gene Wiki entry for KRT36 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NT_010783.16  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the KRT36 gene promoter:
         p53   Pax-6   ARP-1   HNF-4alpha2   Nkx2-5   HNF-4alpha1   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKRT36 promoter sequence
   Search Chromatin IP Primers for KRT36

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KRT36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21.2   Ensembl cytogenetic band:  17q21.2   HGNC cytogenetic band: 17q21.2

KRT36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KRT36 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M039642:  view genomic region     (about GC identifiers)

Start:
39,642,388 bp from pter      End:
39,648,798 bp from pter
Size:
6,411 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: KRT36_HUMAN, O76013 (See protein sequence)
Recommended Name: Keratin, type I cuticular Ha6  
Size: 467 amino acids; 52247 Da
Subunit: Heterotetramer of two type I and two type II keratins (By similarity)
Miscellaneous: There are two types of hair/microfibrillar keratin, I (acidic) and II (neutral to basic)
Secondary accessions: Q86XG4
Alternative splicing: 2 isoforms:  O76013-1   O76013-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for KRT36: NX_O76013

Explore proteomics data for KRT36 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See KRT36 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_003762.1  
    ENSEMBL proteins: 
     ENSP00000329165   ENSP00000377555  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    IFF1: Intermediate filaments type I, keratins (acidic)

    4 InterPro protein domains:
     IPR009053 Prefoldin
     IPR018039 Intermediate_filament_CS
     IPR001664 IF
     IPR002957 Keratin_I

    Graphical View of Domain Structure for InterPro Entry O76013

    ProtoNet protein and cluster: O76013

    2 Blocks protein domains:
    IPB001664 Intermediate filament protein
    IPB002957 Type I keratin signature


    UniProtKB/Swiss-Prot: KRT36_HUMAN, O76013
    Similarity: Belongs to the intermediate filament family


    Find genes that share domains with KRT36           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005198structural molecule activity ----
    GO:0030280structural constituent of epidermis NAS9756910
         
    Find genes that share ontologies with KRT36           About GenesLikeMe


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton3
    cytosol3
    mitochondrion2
    golgi apparatus1
    nucleus1
    peroxisome1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005882intermediate filament IEA--
    GO:0045111intermediate filament cytoskeleton ----

    Find genes that share ontologies with KRT36           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KRT36
    Interactions:

        Search GeneGlobe Interaction Network for KRT36

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    Selected Interacting proteins for KRT36 (O760132, 3 ENSP000003291654) via UniProtKB, MINT, STRING, and/or I2D (see all 15)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DNPEPQ9ULA03, ENSP000002730754I2D: score=2 STRING: ENSP00000273075
    TWF2Q6IBS03, ENSP000003039084I2D: score=2 STRING: ENSP00000303908
    GRB2P629933, ENSP000003390074I2D: score=1 STRING: ENSP00000339007
    OTUD4Q018043, ENSP000004092794I2D: score=2 STRING: ENSP00000409279
    USP8P408183, ENSP000003022394I2D: score=2 STRING: ENSP00000302239
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    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--
    GO:0045616regulation of keratinocyte differentiation IEA--

    Find genes that share ontologies with KRT36           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for KRT36



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for KRT36 gene: 
    NM_003771.4  

    Unigene Cluster for KRT36:

    Keratin 36
    Hs.248189  [show with all ESTs]
    Unigene Representative Sequence: BC043581
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000328119(uc002hwt.3) ENST00000393986
    miRNA
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    Additional mRNA sequence: BC043581.1 

    3 DOTS entries:

    DT.92030344  DT.95203465  DT.97822767 

    7 AceView cDNA sequences:

    NM_003771 BC043581 BI833804 CA306205 BG980230 BQ318441 BQ318418 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    KRT36 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CAAAACCAGG
    KRT36 Expression
    About this image


    KRT36 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Epithelial Cells
             Fetal Matrix Cells Hair Follicle
     
     Gut Tube (Gastrointestinal Tract)
             Pharynx
     
     Hair (Integumentary System)
             Fetal Matrix Cells Hair Follicle
    KRT36 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    KRT36 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.248189

    UniProtKB/Swiss-Prot: KRT36_HUMAN, O76013
    Tissue specificity: Expressed in the hair follicles

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for KRT36 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Krt361 , 5 keratin 361, 5 85.8(n)1
    84.37(a)1
      11 (63.41 cM)5
    166731  NM_001174099.11  NP_001167570.11 
     1001020075 


    ENSEMBL Gene Tree for KRT36 (if available)
    TreeFam Gene Tree for KRT36 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KRT36 gene
    KRT342  KRT172  KRT162  KRT312  KRT252  KRT392  KRT402  KRT202  
    KRT372  KRT272  KRT322  KRT382  KRT192  KRT282  KRT142  KRT132  
    KRT262  KRT102  KRT122  KRT352  KRT152  KRT242  KRT33B2  KRT92  
    KRT33A2  
    Selected SIMAP similar genes for KRT36 using alignment to 1 protein entry:     KRT36_HUMAN(see all similar genes):
    KRT31    KRT34    KRT35    KRT33B    KRT15    KRT19
    keratin    KRT33A    KRT32    KRT40    KRTHA7    KRT13
    KRT16    KRT18    KRT39    KRT9    KRT10    KRT37

    Find genes that share paralogs with KRT36           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KRT36 (see all 249)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs8974181,2
    C,F,A,H--39641932(-) ATCCTG/CAGCCA 1 -- ds500117Minor allele frequency- C:0.10MN NS EA NA WA CSA 927
    rs1388563251,2
    --39641957(+) TGGCC-/CTCTCTG 1 -- ds50010--------
    rs1818192651,2
    --39642026(+) GCAGCC/TGGGCA 1 -- ds50010--------
    rs1461890251,2
    C--39642060(+) AGAGAG/TATAGC 1 -- ds50010--------
    rs1484167401,2
    --39642086(+) GGGCTA/GTGGAT 1 -- ds50010--------
    rs20033361,2
    C,F,H--39642109(+) TGGAGC/TCTTTG 1 -- ds50017Minor allele frequency- T:0.02MN NS NA WA 810
    rs1873624941,2
    C--39642284(+) AGCCCA/GAGAAG 1 -- ds50010--------
    rs1922062541,2
    --39642356(+) CACACA/GAGCAC 1 -- ds50010--------
    rs1809619281,2
    --39642365(+) ACATGA/CGCATC 1 -- ds50010--------
    rs38346081,2
    C--39647078(-) TAACC-/TAACC 
            
    TAACC
    1 -- us2k10--------

    HapMap Linkage Disequilibrium report for KRT36 (39642388 - 39648798 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for KRT36:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv483014CNV Loss15286789
    nsv524606CNV Loss19592680
    nsv510711CNV Loss20534489
    nsv526466CNV Gain19592680
    nsv827992CNV Gain20364138
    nsv9555CNV Gain18304495
    dgv962e1CNV Complex17122850
    dgv961e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing KRT36
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 604540    OMIM disorders: --


    Find genes that share disorders with KRT36           About GenesLikeMe


    Export disorders for KRT36 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KRT36 gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with KRT36)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of a 190-kilobase pair domain of human type I hair keratin genes. (PubMed id 9756910)1, 2, 3 Rogers M.A.... Schweizer J. (J. Biol. Chem. 1998)
    2. New consensus nomenclature for mammalian keratins. (PubMed id 16831889)1, 3 Schweizer J....Wright M.W. (J. Cell Biol. 2006)
    3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
    4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)
    5. Defining the human deubiquitinating enzyme interaction landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (Cell 2009)
    6. Charting the molecular network of the drug target Bcr-Abl. (PubMed id 19380743)1 Brehme M....Superti-Furga G. (Proc. Natl. Acad. Sci. U.S.A. 2009)
    7. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)1 Ewing R.M....Figeys D. (Mol. Syst. Biol. 2007)
    8. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (Cell 2006)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 8689 HGNC: 6454 AceView: KRTHA6 Ensembl:ENSG00000126337 euGenes: HUgn8689
    ECgene: KRT36 H-InvDB: KRT36

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KRT36 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KRT36 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Block miRNA regulation of human, mouse, rat KRT36 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing KRT36
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     Search Addgene for plasmids for KRT36
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      eBioscience FlowRNA Probe Sets
           
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