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Aliases for KRT28 Gene

Aliases for KRT28 Gene

  • Keratin 28 2 3
  • Keratin 28, Type I 2 3 5
  • Type I Inner Root Sheath-Specific Keratin-K25irs4 3 4
  • Cytokeratin-28 3 4
  • Keratin 25D 2 3
  • Keratin-25D 3 4
  • Keratin-28 3 4
  • KRT25D 3 4
  • CK-28 3 4
  • K25D 3 4
  • K28 3 4
  • Type I Inner Root Sheath Specific Keratin 25 Irs4 3
  • K25IRS4 3

External Ids for KRT28 Gene

Previous HGNC Symbols for KRT28 Gene

  • KRT25D

Previous GeneCards Identifiers for KRT28 Gene

  • GC17M036202
  • GC17M038948
  • GC17M034742

Summaries for KRT28 Gene

Entrez Gene Summary for KRT28 Gene

  • This gene encodes a member of the type I (acidic) keratin family, which belongs to the superfamily of intermediate filament (IF) proteins. Keratins are heteropolymeric structural proteins which form the intermediate filament. These filaments, along with actin microfilaments and microtubules, compose the cytoskeleton of epithelial cells. The type I keratin genes are clustered in a region of chromosome 17q12-q21. [provided by RefSeq, Jul 2009]

GeneCards Summary for KRT28 Gene

KRT28 (Keratin 28) is a Protein Coding gene. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is KRT12.

UniProtKB/Swiss-Prot for KRT28 Gene

  • Essential for the proper assembly of types I and II keratin protein complexes and the formation of keratin intermediate filaments in the inner root sheath (irs).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT28 Gene

Genomics for KRT28 Gene

Regulatory Elements for KRT28 Gene

Enhancers for KRT28 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around KRT28 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRT28 Gene

Chromosome:
17
Start:
40,792,196 bp from pter
End:
40,799,959 bp from pter
Size:
7,764 bases
Orientation:
Minus strand

Genomic View for KRT28 Gene

Genes around KRT28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT28 Gene

Proteins for KRT28 Gene

  • Protein details for KRT28 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z3Y7-K1C28_HUMAN
    Recommended name:
    Keratin, type I cytoskeletal 28
    Protein Accession:
    Q7Z3Y7
    Secondary Accessions:
    • Q6ZP84

    Protein attributes for KRT28 Gene

    Size:
    464 amino acids
    Molecular mass:
    50567 Da
    Quaternary structure:
    • Heterotetramer of two type I and two type II keratins.
    Miscellaneous:
    • There are two types of cytoskeletal and microfibrillar keratin: I (acidic; 40-55 kDa) and II (neutral to basic; 56-70 kDa).
    SequenceCaution:
    • Sequence=BAC85240.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KRT28 Gene

Proteomics data for KRT28 Gene at MOPED

Post-translational modifications for KRT28 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRT28 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRT28 Gene

Domains & Families for KRT28 Gene

Gene Families for KRT28 Gene

Protein Domains for KRT28 Gene

Suggested Antigen Peptide Sequences for KRT28 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7Z3Y7

UniProtKB/Swiss-Prot:

K1C28_HUMAN :
  • Belongs to the intermediate filament family.
Family:
  • Belongs to the intermediate filament family.
genes like me logo Genes that share domains with KRT28: view

Function for KRT28 Gene

Molecular function for KRT28 Gene

UniProtKB/Swiss-Prot Function:
Essential for the proper assembly of types I and II keratin protein complexes and the formation of keratin intermediate filaments in the inner root sheath (irs).
genes like me logo Genes that share phenotypes with KRT28: view

Animal Model Products

miRNA for KRT28 Gene

miRTarBase miRNAs that target KRT28

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KRT28 Gene

Localization for KRT28 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KRT28 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRT28 Gene COMPARTMENTS Subcellular localization image for KRT28 gene
Compartment Confidence
extracellular 5
cytoskeleton 3
cytosol 3
golgi apparatus 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for KRT28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with KRT28: view

Pathways & Interactions for KRT28 Gene

SuperPathways for KRT28 Gene

No Data Available

Interacting Proteins for KRT28 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000305263%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000356425%0d%0a
Selected Interacting proteins: ENSP00000305263 Q7Z3Y7-K1C28_HUMAN for KRT28 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for KRT28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT28 Gene

Drugs & Compounds for KRT28 Gene

No Compound Related Data Available

Transcripts for KRT28 Gene

mRNA/cDNA for KRT28 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(78) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT28 Gene

Keratin 28:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT28 Gene

No ASD Table

Relevant External Links for KRT28 Gene

GeneLoc Exon Structure for
KRT28
ECgene alternative splicing isoforms for
KRT28

Expression for KRT28 Gene

mRNA expression in normal human tissues for KRT28 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KRT28 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x40.3) and Skin - Sun Exposed (Lower leg) (x9.3).

Protein differential expression in normal tissues from HIPED for KRT28 Gene

This gene is overexpressed in Skin (26.0), Heart (17.7), and Brain (15.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for KRT28 Gene



SOURCE GeneReport for Unigene cluster for KRT28 Gene Hs.59736

mRNA Expression by UniProt/SwissProt for KRT28 Gene

Q7Z3Y7-K1C28_HUMAN
Tissue specificity: Strongly expressed in skin and scalp, and weak expression observed in thymus. In the hair follicle, expressed in Henle layer, Huxley layer and in the irs cuticle. Expression extends from the bulb region up to the point of differentiation into the three layers. Also present in the medulla of beard hair (at protein level).
genes like me logo Genes that share expression patterns with KRT28: view

Protein tissue co-expression partners for KRT28 Gene

- Elite partner

Primer Products

Orthologs for KRT28 Gene

This gene was present in the common ancestor of mammals.

Orthologs for KRT28 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia KRT28 35
  • 88.58 (n)
  • 87.28 (a)
KRT28 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KRT28 35
  • 88.43 (n)
  • 88.58 (a)
mouse
(Mus musculus)
Mammalia Krt28 35
  • 82.47 (n)
  • 85.71 (a)
Krt28 16
Krt28 36
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia KRT28 35
  • 99.28 (n)
  • 99.57 (a)
KRT28 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Krt28 35
  • 82.94 (n)
  • 85.12 (a)
oppossum
(Monodelphis domestica)
Mammalia KRT28 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KRT28 36
  • 79 (a)
OneToOne
Species with no ortholog for KRT28:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRT28 Gene

ENSEMBL:
Gene Tree for KRT28 (if available)
TreeFam:
Gene Tree for KRT28 (if available)

Paralogs for KRT28 Gene

genes like me logo Genes that share paralogs with KRT28: view

Variants for KRT28 Gene

Sequence variations from dbSNP and Humsavar for KRT28 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
VAR_056009 -
rs17558995 - 40,797,038(+) CGAGG(C/T)GCTCT reference, missense
VAR_060236 -
rs1558282 -- 40,794,928(+) TTCAT(G/T)ACATT intron-variant
rs1558283 -- 40,795,220(+) GAGCA(C/G)GTAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KRT28 Gene

Variant ID Type Subtype PubMed ID
nsv908226 CNV Loss 21882294
dgv3166n71 CNV Loss 21882294

Variation tolerance for KRT28 Gene

Residual Variation Intolerance Score: 84.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.68; 82.95% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KRT28 Gene

HapMap Linkage Disequilibrium report
KRT28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRT28 Gene

Disorders for KRT28 Gene

Relevant External Links for KRT28

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT28

No disorders were found for KRT28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT28 Gene

Publications for KRT28 Gene

  1. New consensus nomenclature for mammalian keratins. (PMID: 16831889) Schweizer J. … Wright M.W. (J. Cell Biol. 2006) 2 3 67
  2. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3
  3. The interaction between ubiquitin C-terminal hydrolase 37 and glucose-regulated protein 78 in hepatocellular carcinoma. (PMID: 21800051) Fang Y. … Shen X. (Mol. Cell. Biochem. 2012) 3
  4. The human type I keratin gene family: characterization of new hair follicle specific members and evaluation of the chromosome 17q21.2 gene domain. (PMID: 15617563) Rogers M.A. … Schweizer J. (Differentiation 2004) 3

Products for KRT28 Gene

Sources for KRT28 Gene

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