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Aliases for KRT18P55 Gene

Aliases for KRT18P55 Gene

  • Keratin 18 Pseudogene 55 2 3 5

External Ids for KRT18P55 Gene

Previous GeneCards Identifiers for KRT18P55 Gene

  • GC17M026605
  • GC17M026606
  • GC17M026672
  • GC17M026863
  • GC17M026972
  • GC17M027116

Summaries for KRT18P55 Gene

GeneCards Summary for KRT18P55 Gene

KRT18P55 (Keratin 18 Pseudogene 55) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT18P55 Gene

Genomics for KRT18P55 Gene

Genomic Location for KRT18P55 Gene

Chromosome:
17
Start:
28,275,986 bp from pter
End:
28,317,783 bp from pter
Size:
41,798 bases
Orientation:
Minus strand

Genomic View for KRT18P55 Gene

Genes around KRT18P55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT18P55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT18P55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT18P55 Gene

No data available for Regulatory Elements for KRT18P55 Gene

Proteins for KRT18P55 Gene

Post-translational modifications for KRT18P55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT18P55 Gene

Domains & Families for KRT18P55 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT18P55 Gene

Function for KRT18P55 Gene

Phenotypes for KRT18P55 Gene

genes like me logo Genes that share phenotypes with KRT18P55: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT18P55 Gene

Localization for KRT18P55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT18P55 Gene

Pathways & Interactions for KRT18P55 Gene

SuperPathways for KRT18P55 Gene

No Data Available

Interacting Proteins for KRT18P55 Gene

Gene Ontology (GO) - Biological Process for KRT18P55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT18P55 Gene

Drugs & Compounds for KRT18P55 Gene

No Compound Related Data Available

Transcripts for KRT18P55 Gene

mRNA/cDNA for KRT18P55 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT18P55 Gene

Keratin 18 pseudogene 55:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT18P55 Gene

No ASD Table

Relevant External Links for KRT18P55 Gene

GeneLoc Exon Structure for
KRT18P55
ECgene alternative splicing isoforms for
KRT18P55

Expression for KRT18P55 Gene

mRNA expression in normal human tissues for KRT18P55 Gene

mRNA differential expression in normal tissues according to GTEx for KRT18P55 Gene

This gene is overexpressed in Testis (x53.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from for KRT18P55 Gene



SOURCE GeneReport for Unigene cluster for KRT18P55 Gene Hs.371796

genes like me logo Genes that share expression patterns with KRT18P55: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for KRT18P55 Gene

Orthologs for KRT18P55 Gene

Evolution for KRT18P55 Gene

ENSEMBL:
Gene Tree for KRT18P55 (if available)
TreeFam:
Gene Tree for KRT18P55 (if available)

No data available for Orthologs for KRT18P55 Gene

Paralogs for KRT18P55 Gene

No data available for Paralogs for KRT18P55 Gene

Variants for KRT18P55 Gene

Sequence variations from dbSNP and Humsavar for KRT18P55 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs614877 -- 28,285,970(-) ACTTC(A/G)GAAAG intron-variant
rs5819834 -- 28,284,781(+) TGTGT(-/GT)TGAGA intron-variant
rs6505075 -- 28,290,628(+) tcctg(A/G)agtca intron-variant
rs6505076 -- 28,306,322(+) ttgtt(G/T)ttttt intron-variant
rs9911198 -- 28,285,690(+) gcact(C/G)cagcc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KRT18P55 Gene

Variant ID Type Subtype PubMed ID
nsv519330 CNV Gain 19592680
esv2715785 CNV Deletion 23290073
nsv519388 CNV Loss 19592680

Relevant External Links for KRT18P55 Gene

HapMap Linkage Disequilibrium report
KRT18P55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT18P55 Gene

Disorders for KRT18P55 Gene

Relevant External Links for KRT18P55

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT18P55

No disorders were found for KRT18P55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT18P55 Gene

Publications for KRT18P55 Gene

  1. A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis. (PMID: 24256812) Fogh I. … Silani V. (Hum. Mol. Genet. 2014) 3 67
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for KRT18P55 Gene

Sources for KRT18P55 Gene

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