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Aliases for KRT18P55 Gene

Aliases for KRT18P55 Gene

  • Keratin 18 Pseudogene 55 2 3 5

External Ids for KRT18P55 Gene

Previous GeneCards Identifiers for KRT18P55 Gene

  • GC17M026605
  • GC17M026606
  • GC17M026672
  • GC17M026863
  • GC17M026972
  • GC17M027116

Summaries for KRT18P55 Gene

GeneCards Summary for KRT18P55 Gene

KRT18P55 (Keratin 18 Pseudogene 55) is a Pseudogene.

Additional gene information for KRT18P55 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT18P55 Gene

Genomics for KRT18P55 Gene

GeneHancer (GH) Regulatory Elements for KRT18P55 Gene

Promoters and enhancers for KRT18P55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I028317 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -1.6 -1585 3.7 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 TMEM97 PIR55263 KRT18P55 LOC101927018 SUPT6H NUFIP2 ENSG00000264577 PHF12 ENSG00000265908 ITM2BP1
GH17I028282 Enhancer 1 Ensembl ENCODE 0.3 +34.9 34888 1.8 ZNF792 INSM2 ZNF384 ZNF324 ZNF335 ZNF664 ZFHX2 ZNF316 ZNF213 ZNF366 TMEM97 SUPT6H POLDIP2 SARM1 PIRC93 PIR58208 GC17M029101 KRT18P55
GH17I028277 Enhancer 0.9 Ensembl ENCODE 0.3 +39.4 39377 1.2 HDAC1 PKNOX1 FEZF1 FOSL1 ZFHX2 NCOR1 EGR1 CBFA2T2 ATF7 IKZF2 GC17M029101 PIR58208 TNFAIP1 IFT20 NOS2 PIRC93 KRT18P55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KRT18P55 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT18P55 Gene

Genomic Locations for KRT18P55 Gene
chr17:28,275,986-28,317,783
(GRCh38/hg38)
Size:
41,798 bases
Orientation:
Minus strand
chr17:26,603,012-26,644,809
(GRCh37/hg19)

Genomic View for KRT18P55 Gene

Genes around KRT18P55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT18P55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT18P55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT18P55 Gene

Proteins for KRT18P55 Gene

Post-translational modifications for KRT18P55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT18P55 Gene

Domains & Families for KRT18P55 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT18P55 Gene

Function for KRT18P55 Gene

Phenotypes From GWAS Catalog for KRT18P55 Gene

genes like me logo Genes that share phenotypes with KRT18P55: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT18P55 Gene

Localization for KRT18P55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT18P55 Gene

Pathways & Interactions for KRT18P55 Gene

SuperPathways for KRT18P55 Gene

No Data Available

Interacting Proteins for KRT18P55 Gene

Gene Ontology (GO) - Biological Process for KRT18P55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT18P55 Gene

Drugs & Compounds for KRT18P55 Gene

No Compound Related Data Available

Transcripts for KRT18P55 Gene

mRNA/cDNA for KRT18P55 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT18P55 Gene

Keratin 18 pseudogene 55:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT18P55 Gene

No ASD Table

Relevant External Links for KRT18P55 Gene

GeneLoc Exon Structure for
KRT18P55
ECgene alternative splicing isoforms for
KRT18P55

Expression for KRT18P55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT18P55 Gene

mRNA differential expression in normal tissues according to GTEx for KRT18P55 Gene

This gene is overexpressed in Testis (x53.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for KRT18P55 Gene



NURSA nuclear receptor signaling pathways regulating expression of KRT18P55 Gene:

KRT18P55

SOURCE GeneReport for Unigene cluster for KRT18P55 Gene:

Hs.371796
genes like me logo Genes that share expression patterns with KRT18P55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT18P55 Gene

Orthologs for KRT18P55 Gene

Evolution for KRT18P55 Gene

ENSEMBL:
Gene Tree for KRT18P55 (if available)
TreeFam:
Gene Tree for KRT18P55 (if available)

No data available for Orthologs for KRT18P55 Gene

Paralogs for KRT18P55 Gene

No data available for Paralogs for KRT18P55 Gene

Variants for KRT18P55 Gene

Sequence variations from dbSNP and Humsavar for KRT18P55 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000024038 -- 28,299,595(-) G/A/C/T intron_variant
rs1000060631 -- 28,291,940(-) C/T intron_variant
rs1000099014 -- 28,292,175(-) C/T intron_variant
rs1000125647 -- 28,302,905(-) G/A intron_variant
rs1000159335 -- 28,299,358(-) /C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KRT18P55 Gene

Variant ID Type Subtype PubMed ID
esv2715785 CNV deletion 23290073
nsv519330 CNV gain 19592680
nsv519388 CNV loss 19592680
nsv574653 CNV gain 21841781
nsv960455 CNV duplication 23825009

Additional Variant Information for KRT18P55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT18P55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT18P55 Gene

Disorders for KRT18P55 Gene

Additional Disease Information for KRT18P55

No disorders were found for KRT18P55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT18P55 Gene

Publications for KRT18P55 Gene

  1. A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis. (PMID: 24256812) Fogh I … SLAGEN Consortium and Collaborators (Human molecular genetics 2014) 3 58
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for KRT18P55 Gene

Sources for KRT18P55 Gene

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