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Aliases for KRT16P3 Gene

Aliases for KRT16P3 Gene

  • Keratin 16 Pseudogene 3 2 3
  • Cytokeratin, Smith Magenis Syndrome Chromosome Region 2
  • KERSMCR 3

External Ids for KRT16P3 Gene

Previous HGNC Symbols for KRT16P3 Gene

  • KERSMCR

Previous GeneCards Identifiers for KRT16P3 Gene

  • GC17M020404
  • GC17M019634

Summaries for KRT16P3 Gene

GeneCards Summary for KRT16P3 Gene

KRT16P3 (Keratin 16 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT16P3 Gene

Genomics for KRT16P3 Gene

Genomic Location for KRT16P3 Gene

Start:
20,501,513 bp from pter
End:
20,512,357 bp from pter
Size:
10,845 bases
Orientation:
Minus strand

Genomic View for KRT16P3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRT16P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT16P3 Gene

No data available for Regulatory Elements for KRT16P3 Gene

Proteins for KRT16P3 Gene

Post-translational modifications for KRT16P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT16P3 Gene

Domains for KRT16P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT16P3 Gene

Function for KRT16P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRT16P3 Gene

Localization for KRT16P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT16P3 Gene

Pathways for KRT16P3 Gene

SuperPathways for KRT16P3 Gene

No Data Available

Interacting Proteins for KRT16P3 Gene

Gene Ontology (GO) - Biological Process for KRT16P3 Gene

None

No data available for Pathways by source for KRT16P3 Gene

Transcripts for KRT16P3 Gene

mRNA/cDNA for KRT16P3 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT16P3 Gene

Keratin 16 pseudogene 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KRT16P3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT16P3 Gene

No ASD Table

Relevant External Links for KRT16P3 Gene

GeneLoc Exon Structure for
KRT16P3
ECgene alternative splicing isoforms for
KRT16P3

Expression for KRT16P3 Gene

mRNA expression in normal human tissues for KRT16P3 Gene

mRNA differential expression in normal tissues according to GTEx for KRT16P3 Gene

This gene is overexpressed in Esophagus - Mucosa (27.7), Vagina (7.0), and Cervix - Ectocervix (4.7).

SOURCE GeneReport for Unigene cluster for KRT16P3 Gene Hs.572477

genes like me logo Genes that share expressions with KRT16P3: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for KRT16P3 Gene

Orthologs for KRT16P3 Gene

Evolution for KRT16P3 Gene

ENSEMBL:
Gene Tree for KRT16P3 (if available)
TreeFam:
Gene Tree for KRT16P3 (if available)

No data available for Orthologs for KRT16P3 Gene

Paralogs for KRT16P3 Gene

No data available for Paralogs for KRT16P3 Gene

Variants for KRT16P3 Gene

Sequence variations from dbSNP and Humsavar for KRT16P3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs611248 -- 20,503,931(+) GACTG(C/T)AGTCT nc-transcript-variant
rs3907119 -- 20,501,370(-) CTCCA(C/T)GCTCT downstream-variant-500B
rs56366418 -- 20,503,836(+) ATCCC(A/G)AGGGA intron-variant
rs56413319 -- 20,501,607(+) CTGAC(A/C)CAGGC nc-transcript-variant
rs58255289 -- 20,502,090(+) CAGGC(A/G)GCGGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for KRT16P3 Gene

Variant ID Type Subtype PubMed ID
nsv520772 CNV Loss 19592680
nsv521025 CNV Gain 19592680
nsv471495 CNV Duplication 19718026
nsv469852 CNV Complex 16826518
nsv833397 CNV Loss 17160897
dgv935e1 CNV Complex 17122850
nsv428338 CNV Gain 18775914
dgv936e1 CNV Complex 17122850
nsv833399 CNV Loss 17160897
esv23447 CNV Gain+Loss 19812545
nsv9507 CNV Gain+Loss 18304495
dgv3102n71 CNV Loss 21882294
nsv907875 CNV Gain 21882294
esv2715742 CNV Deletion 23290073
nsv827916 CNV Gain 20364138
dgv3103n71 CNV Gain+Loss 21882294

Relevant External Links for KRT16P3 Gene

HapMap Linkage Disequilibrium report
KRT16P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRT16P3 Gene

Disorders for KRT16P3 Gene

No disorders were found for KRT16P3 Gene.

No data available for UniProtKB/Swiss-Prot for KRT16P3 Gene

Publications for KRT16P3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for KRT16P3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KRT16P3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for KRT16P3
    • Block miRNA regulation of KRT16P3 using miScript Target Protectors

    Sources for KRT16P3 Gene

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