Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KRT16P2 Gene

Aliases for KRT16P2 Gene

  • Keratin 16 Pseudogene 2 2 3 5

External Ids for KRT16P2 Gene

Previous GeneCards Identifiers for KRT16P2 Gene

  • GC17M016734

Summaries for KRT16P2 Gene

GeneCards Summary for KRT16P2 Gene

KRT16P2 (Keratin 16 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT16P2 Gene

Genomics for KRT16P2 Gene

Regulatory Elements for KRT16P2 Gene

Enhancers for KRT16P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F016905 0.8 ENCODE 5.9 -73.2 -73189 0.2 GATA3 JUND ZNF133 FEZF1 MAFK KRT17P4 KRT16P2 ENSG00000265853 TBC1D27
GH17F016872 0.4 ENCODE 5.6 -40.4 -40406 1.3 CTCF ZNF654 KLF16 GLIS1 SMC3 REST ZIC2 RAD21 KRT17P4 KRT16P2 ENSG00000283033 LOC101929105
GH17F016893 0.3 FANTOM5 4.8 -60.7 -60683 0.3 L3MBTL2 MGA KRT16P2 CCDC144A COPS3 ENSG00000265853 TBC1D27
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KRT16P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRT16P2 Gene

Chromosome:
17
Start:
16,829,999 bp from pter
End:
16,832,833 bp from pter
Size:
2,835 bases
Orientation:
Minus strand

Genomic View for KRT16P2 Gene

Genes around KRT16P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT16P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT16P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT16P2 Gene

Proteins for KRT16P2 Gene

Post-translational modifications for KRT16P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT16P2 Gene

Domains & Families for KRT16P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT16P2 Gene

Function for KRT16P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT16P2 Gene

Localization for KRT16P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT16P2 Gene

Pathways & Interactions for KRT16P2 Gene

SuperPathways for KRT16P2 Gene

No Data Available

Interacting Proteins for KRT16P2 Gene

Gene Ontology (GO) - Biological Process for KRT16P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT16P2 Gene

Transcripts for KRT16P2 Gene

mRNA/cDNA for KRT16P2 Gene

(2) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT16P2 Gene

Keratin 16 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT16P2 Gene

No ASD Table

Relevant External Links for KRT16P2 Gene

GeneLoc Exon Structure for
KRT16P2
ECgene alternative splicing isoforms for
KRT16P2

Expression for KRT16P2 Gene

mRNA expression in normal human tissues for KRT16P2 Gene

mRNA differential expression in normal tissues according to GTEx for KRT16P2 Gene

This gene is overexpressed in Lung (x13.9), Esophagus - Mucosa (x13.9), Liver (x8.9), and Vagina (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of KRT16P2 Gene:

KRT16P2

SOURCE GeneReport for Unigene cluster for KRT16P2 Gene:

Hs.723586
genes like me logo Genes that share expression patterns with KRT16P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KRT16P2 Gene

Orthologs for KRT16P2 Gene

Evolution for KRT16P2 Gene

ENSEMBL:
Gene Tree for KRT16P2 (if available)
TreeFam:
Gene Tree for KRT16P2 (if available)

No data available for Orthologs for KRT16P2 Gene

Paralogs for KRT16P2 Gene

No data available for Paralogs for KRT16P2 Gene

Variants for KRT16P2 Gene

Sequence variations from dbSNP and Humsavar for KRT16P2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112614237 -- 16,832,259(+) GGGAC(C/T)GCAGT nc-transcript-variant, upstream-variant-2KB
rs113083514 -- 16,831,859(+) AAGGG(A/G)CAAAA intron-variant, upstream-variant-2KB
rs113335555 -- 16,834,370(+) AGGGG(G/T)AACCA nc-transcript-variant, upstream-variant-2KB
rs113793310 -- 16,832,074(+) GACCC(C/T)CTGCC intron-variant, upstream-variant-2KB
rs115984685 -- 16,832,676(+) GAGCC(A/G)CCCCT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KRT16P2 Gene

Variant ID Type Subtype PubMed ID
esv2635467 CNV loss 19546169
esv2758676 CNV gain+loss 17122850
esv3892974 CNV loss 25118596
nsv1141300 CNV duplication 24896259
nsv1160457 CNV duplication 26073780
nsv155 OTHER inversion 15895083
nsv574522 CNV loss 21841781
nsv833378 CNV gain 17160897
nsv833379 CNV gain 17160897
nsv9498 CNV gain+loss 18304495
nsv978374 CNV duplication 23825009

Relevant External Links for KRT16P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT16P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT16P2 Gene

Disorders for KRT16P2 Gene

Relevant External Links for KRT16P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT16P2

No disorders were found for KRT16P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT16P2 Gene

Publications for KRT16P2 Gene

No publications were found for KRT16P2 Gene.

Products for KRT16P2 Gene

Sources for KRT16P2 Gene

Content
Loading form....