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Aliases for KRT16P1 Gene

Aliases for KRT16P1 Gene

  • Keratin 16 Pseudogene 1 2 3 5
  • Keratin 14 Pseudogene 2 3
  • KRT16P 3
  • KRT14P 3

External Ids for KRT16P1 Gene

Previous HGNC Symbols for KRT16P1 Gene

  • KRT14P

Previous GeneCards Identifiers for KRT16P1 Gene

  • GC00U990189
  • GC17P018346
  • GC17P018348
  • GC17P018369
  • GC17P018392
  • GC17P018433
  • GC17P018436
  • GC17P018450
  • GC17P018455
  • GC17P018472

Summaries for KRT16P1 Gene

GeneCards Summary for KRT16P1 Gene

KRT16P1 (Keratin 16 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT16P1 Gene

Genomics for KRT16P1 Gene

Regulatory Elements for KRT16P1 Gene

Enhancers for KRT16P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G018436 0.2 Ensembl 0.7 +4.5 4450 0.2 KRT16P1 LOC105371570
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KRT16P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KRT16P1 Gene

Chromosome:
17
Start:
18,432,051 bp from pter
End:
18,442,895 bp from pter
Size:
10,845 bases
Orientation:
Plus strand

Genomic View for KRT16P1 Gene

Genes around KRT16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT16P1 Gene

Proteins for KRT16P1 Gene

Post-translational modifications for KRT16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT16P1 Gene

Domains & Families for KRT16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT16P1 Gene

Function for KRT16P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT16P1 Gene

Localization for KRT16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRT16P1 Gene

Pathways & Interactions for KRT16P1 Gene

SuperPathways for KRT16P1 Gene

No Data Available

Interacting Proteins for KRT16P1 Gene

Gene Ontology (GO) - Biological Process for KRT16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT16P1 Gene

Drugs & Compounds for KRT16P1 Gene

No Compound Related Data Available

Transcripts for KRT16P1 Gene

mRNA/cDNA for KRT16P1 Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT16P1 Gene

Keratin 16 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRT16P1 Gene

No ASD Table

Relevant External Links for KRT16P1 Gene

GeneLoc Exon Structure for
KRT16P1
ECgene alternative splicing isoforms for
KRT16P1

Expression for KRT16P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT16P1 Gene

mRNA differential expression in normal tissues according to GTEx for KRT16P1 Gene

This gene is overexpressed in Esophagus - Mucosa (x23.3), Liver (x7.3), Vagina (x5.9), and Lung (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of KRT16P1 Gene:

KRT16P1

SOURCE GeneReport for Unigene cluster for KRT16P1 Gene:

Hs.585811
genes like me logo Genes that share expression patterns with KRT16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT16P1 Gene

Orthologs for KRT16P1 Gene

Evolution for KRT16P1 Gene

ENSEMBL:
Gene Tree for KRT16P1 (if available)
TreeFam:
Gene Tree for KRT16P1 (if available)

No data available for Orthologs for KRT16P1 Gene

Paralogs for KRT16P1 Gene

No data available for Paralogs for KRT16P1 Gene

Variants for KRT16P1 Gene

Sequence variations from dbSNP and Humsavar for KRT16P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1002109721 -- 18,440,942(+) CTCCA(A/T)CCCCA intron-variant, upstream-variant-2KB
rs1002853007 -- 18,441,664(+) GAGAG(A/C)CTCAC intron-variant, upstream-variant-2KB
rs1004360497 -- 18,440,178(+) GGGCT(-/G)GGGGG nc-transcript-variant, upstream-variant-2KB
rs1004691499 -- 18,439,633(+) CCCCA(A/C)GGGCT intron-variant, upstream-variant-2KB
rs1009469594 -- 18,443,289(+) AGTCC(A/G)TGCCT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for KRT16P1 Gene

Variant ID Type Subtype PubMed ID
dgv3110n100 CNV gain 25217958
dgv3111n100 CNV gain 25217958
dgv3112n100 CNV gain+loss 25217958
dgv3113n100 CNV loss 25217958
dgv5484n54 CNV gain 21841781
dgv5485n54 CNV gain 21841781
dgv55e203 CNV gain+loss 21179565
esv2758677 CNV gain+loss 17122850
nsv1066489 CNV gain 25217958
nsv1110292 CNV duplication 24896259
nsv1131133 CNV deletion 24896259
nsv1153273 CNV duplication 26484159
nsv1160459 CNV duplication 26073780
nsv1160460 OTHER complex 26073780
nsv1160461 CNV deletion 26073780
nsv428333 CNV gain 18775914
nsv469661 CNV gain 16826518
nsv511593 CNV loss 21212237
nsv511594 CNV loss 21212237
nsv827913 CNV gain 20364138
nsv827914 CNV gain 20364138
nsv833387 CNV loss 17160897
nsv833388 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv953840 CNV deletion 24416366
nsv962275 CNV duplication 23825009

Relevant External Links for KRT16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT16P1 Gene

Disorders for KRT16P1 Gene

Relevant External Links for KRT16P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRT16P1

No disorders were found for KRT16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT16P1 Gene

Publications for KRT16P1 Gene

No publications were found for KRT16P1 Gene.

Products for KRT16P1 Gene

Sources for KRT16P1 Gene

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